Wall clock time and date at job start Mon Mar 30 2020 04:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 O 1.21282 * 119.99865 * 240.00203 * 12 2 1 14 14 N 1.34774 * 120.00164 * 59.99708 * 12 2 1 15 15 C 1.46496 * 120.00339 * 180.02562 * 14 12 2 16 16 H 1.09007 * 109.46916 * 325.00088 * 15 14 12 17 17 C 1.53002 * 109.47001 * 84.99506 * 15 14 12 18 18 C 1.52992 * 109.47445 * 204.99941 * 15 14 12 19 19 N 1.46502 * 109.46872 * 64.99957 * 18 15 14 20 20 C 1.34949 * 126.03684 * 125.00315 * 19 18 15 21 21 C 1.35317 * 107.74991 * 179.97438 * 20 19 18 22 22 C 1.39880 * 107.91425 * 0.02562 * 21 20 19 23 23 N 1.30835 * 108.20256 * 359.73770 * 22 21 20 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 28 28 H 0.97005 * 119.99795 * 359.97438 * 14 12 2 29 29 H 1.09002 * 109.46925 * 180.02562 * 17 15 14 30 30 H 1.08994 * 109.47420 * 300.00519 * 17 15 14 31 31 H 1.09007 * 109.46811 * 60.00518 * 17 15 14 32 32 H 1.09002 * 109.47437 * 184.99634 * 18 15 14 33 33 H 1.09001 * 109.47477 * 304.99815 * 18 15 14 34 34 H 1.08003 * 126.12500 * 359.97438 * 20 19 18 35 35 H 1.07992 * 126.04599 * 180.02562 * 21 20 19 36 36 H 1.07996 * 125.89670 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 6 2.0324 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1946 -0.9406 -3.6508 16 1 3.1938 -1.3332 -3.4616 17 6 1.2501 -2.0943 -3.9944 18 6 2.2462 0.0424 -4.8221 19 7 3.2394 1.0826 -4.5431 20 6 4.2813 1.4176 -5.3325 21 6 4.9560 2.4193 -4.7221 22 6 4.3043 2.7058 -3.5181 23 7 3.2722 1.9087 -3.4123 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1617 3.4844 28 1 1.1487 0.5386 -2.5436 29 1 1.6134 -2.6085 -4.8842 30 1 1.2133 -2.7945 -3.1600 31 1 0.2510 -1.7017 -4.1836 32 1 2.5238 -0.4904 -5.7316 33 1 1.2666 0.5015 -4.9546 34 1 4.5319 0.9670 -6.2815 35 1 5.8411 2.9107 -5.0981 36 1 4.5992 3.4584 -2.8019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596791383.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:45 Heat of formation + Delta-G solvation = 10.366959 kcal Electronic energy + Delta-G solvation = -18661.126114 eV Core-core repulsion = 15760.013828 eV Total energy + Delta-G solvation = -2901.112286 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.97911 -40.56430 -37.18483 -35.74325 -33.74841 -32.59675 -31.05415 -30.76236 -27.27009 -27.17384 -24.82747 -22.74263 -21.85778 -21.45956 -20.97705 -18.42802 -18.22453 -17.59012 -17.25899 -16.40751 -15.85734 -15.57823 -15.29465 -14.86467 -14.64843 -14.33355 -14.07752 -13.75381 -13.59697 -13.28537 -13.06247 -12.97956 -12.93593 -12.63926 -12.60992 -12.23508 -12.11740 -12.01124 -11.45530 -11.04584 -10.59896 -10.33552 -10.26449 -9.87088 -9.42126 -8.15369 -6.26198 1.09356 1.38240 1.38812 1.51198 1.72118 2.01243 2.03568 2.36406 2.56166 3.13430 3.47666 3.89668 4.05562 4.16497 4.26626 4.35238 4.47526 4.57886 4.72928 4.74757 4.82479 4.92725 4.96640 4.99080 5.06807 5.20762 5.28426 5.49653 5.68137 5.76320 5.81014 5.94081 6.21527 6.26717 6.75350 6.86580 6.89913 7.39750 7.61217 8.90699 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.025538 B = 0.005945 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.148943 B = 4709.093451 C = 5222.185952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.026 3.974 3 H 0.030 0.970 4 C -0.528 4.528 5 H 0.045 0.955 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.271 1.271 11 H -0.278 1.278 12 C 0.528 3.472 13 O -0.596 6.596 14 N -0.708 5.708 15 C 0.127 3.873 16 H 0.053 0.947 17 C -0.152 4.152 18 C 0.128 3.872 19 N -0.380 5.380 20 C 0.055 3.945 21 C -0.288 4.288 22 C 0.019 3.981 23 N -0.328 5.328 24 H 0.069 0.931 25 H 0.024 0.976 26 H 0.047 0.953 27 H 0.265 0.735 28 H 0.405 0.595 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.106 0.894 34 H 0.216 0.784 35 H 0.166 0.834 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.701 1.896 -20.166 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.005 3.995 3 H 0.048 0.952 4 C -0.567 4.567 5 H 0.064 0.936 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.782 3.218 9 H -0.201 1.201 10 H -0.196 1.196 11 H -0.203 1.203 12 C 0.317 3.683 13 O -0.476 6.476 14 N -0.360 5.360 15 C 0.021 3.979 16 H 0.071 0.929 17 C -0.211 4.211 18 C 0.008 3.992 19 N -0.163 5.163 20 C -0.091 4.091 21 C -0.317 4.317 22 C -0.167 4.167 23 N -0.150 5.150 24 H 0.088 0.912 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.241 0.759 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.173 0.827 33 H 0.124 0.876 34 H 0.232 0.768 35 H 0.183 0.817 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 0.999 0.860 -19.291 19.336 hybrid contribution 0.933 0.313 0.818 1.280 sum 1.933 1.173 -18.474 18.611 Atomic orbital electron populations 1.21508 0.95088 0.99272 1.01431 1.18734 0.95290 0.95454 0.90016 0.95223 1.21278 1.31511 1.12604 0.91270 0.93633 1.25638 0.95206 0.95795 1.01494 1.69965 1.37261 1.23627 1.24258 0.85575 0.78399 0.78737 0.79043 1.20086 1.19616 1.20318 1.21345 0.77894 0.83353 0.85732 1.90476 1.40421 1.29116 1.87630 1.45909 1.53753 1.31804 1.04510 1.21270 0.98445 0.93298 0.84879 0.92855 1.22071 0.99988 0.96849 1.02179 1.22359 0.92357 0.86040 0.98473 1.48953 1.23239 1.28697 1.15408 1.23265 0.89073 0.97938 0.98823 1.21832 1.06688 1.05464 0.97760 1.24300 0.94089 0.99251 0.99049 1.77446 1.23556 1.07245 1.06740 0.91233 0.95716 0.93388 0.92608 0.75922 0.88213 0.94961 0.90296 0.82700 0.87612 0.76779 0.81662 0.79761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.58 8.87 71.98 0.64 -4.94 16 2 C 0.03 1.42 2.64 -12.29 -0.03 1.39 16 3 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 4 C -0.53 -32.39 8.37 25.60 0.21 -32.18 16 5 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 6 C 0.02 1.03 5.30 84.66 0.45 1.48 16 7 N -0.91 -53.54 11.32 21.45 0.24 -53.29 16 8 Si 0.96 46.78 29.54 68.60 2.03 48.80 16 9 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 12 C 0.53 25.98 7.11 87.66 0.62 26.60 16 13 O -0.60 -33.69 15.12 -3.04 -0.05 -33.74 16 14 N -0.71 -25.79 3.94 -442.54 -1.74 -27.54 16 15 C 0.13 3.50 2.79 44.99 0.13 3.62 16 16 H 0.05 1.85 7.58 -2.38 -0.02 1.83 16 17 C -0.15 -3.43 9.48 71.98 0.68 -2.75 16 18 C 0.13 2.28 6.04 86.38 0.52 2.80 16 19 N -0.38 -9.22 3.68 -348.06 -1.28 -10.50 16 20 C 0.05 1.03 11.45 83.54 0.96 1.99 16 21 C -0.29 -6.28 10.80 21.99 0.24 -6.04 16 22 C 0.02 0.53 12.03 85.24 1.03 1.56 16 23 N -0.33 -10.70 11.34 -57.02 -0.65 -11.35 16 24 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 25 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 1.91 7.56 -2.38 -0.02 1.89 16 27 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.41 13.63 7.87 -92.70 -0.73 12.90 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.03 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.16 1.23 8.07 -2.39 -0.02 1.21 16 33 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.22 1.82 8.06 -2.91 -0.02 1.79 16 35 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 36 H 0.19 4.61 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -79.96 306.38 4.34 -75.62 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.34 Total: 18.45 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 5.44 Total: -6.46 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -3.43 Total: -102.68 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.05 Total: -33.74 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -79.96 4.34 -75.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596791383.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.988 kcal (2) G-P(sol) polarization free energy of solvation -79.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds