Wall clock time and date at job start Mon Mar 30 2020 04:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47001 * 2 1 4 4 C 1.34954 * 126.03713 * 124.99785 * 3 2 1 5 5 C 1.35315 * 107.74451 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.03620 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.47347 * 90.00376 * 6 5 4 8 8 C 1.34778 * 120.00428 * 179.97438 * 7 6 5 9 9 O 1.21287 * 119.99371 * 0.02562 * 8 7 6 10 10 C 1.50694 * 120.00228 * 179.97438 * 8 7 6 11 11 H 1.09003 * 109.47163 * 60.00026 * 10 8 7 12 12 C 1.53005 * 109.47366 * 300.00385 * 10 8 7 13 13 C 1.50699 * 109.47151 * 180.02562 * 10 8 7 14 14 H 1.07998 * 120.00131 * 0.02562 * 13 10 8 15 15 C 1.37875 * 120.00101 * 180.02562 * 13 10 8 16 16 N 1.31515 * 119.99861 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 120.00054 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47280 * 89.99793 * 17 15 13 19 19 H 1.48506 * 109.47120 * 209.99733 * 17 15 13 20 20 H 1.48496 * 109.47102 * 330.00005 * 17 15 13 21 21 C 1.39867 * 107.92134 * 0.02562 * 5 4 3 22 22 N 1.30834 * 108.20347 * 359.97438 * 21 5 4 23 23 H 1.09002 * 109.47440 * 300.00340 * 1 2 3 24 24 H 1.08998 * 109.47034 * 60.00149 * 1 2 3 25 25 H 1.09001 * 109.47204 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47166 * 239.99637 * 2 1 3 27 27 H 1.08999 * 109.46588 * 119.99558 * 2 1 3 28 28 H 1.08001 * 126.12517 * 359.75938 * 4 3 2 29 29 H 1.09006 * 109.46835 * 209.99807 * 6 5 4 30 30 H 1.09003 * 109.47438 * 329.99807 * 6 5 4 31 31 H 0.97001 * 119.99577 * 359.97438 * 7 6 5 32 32 H 1.08993 * 109.46824 * 59.99738 * 12 10 8 33 33 H 1.09000 * 109.46972 * 180.02562 * 12 10 8 34 34 H 1.09003 * 109.46686 * 299.99933 * 12 10 8 35 35 H 0.97001 * 119.99943 * 180.02562 * 16 15 13 36 36 H 1.08000 * 125.89932 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8731 1.9211 0.8940 5 6 3.0712 3.2138 0.5464 6 6 3.9547 4.1999 1.2660 7 7 5.3073 4.1429 0.7063 8 6 6.2742 4.9432 1.1973 9 8 6.0245 5.7103 2.1030 10 6 7.6657 4.8842 0.6218 11 1 7.6311 5.1332 -0.4388 12 6 8.2302 3.4728 0.7960 13 6 8.5492 5.8704 1.3414 14 1 8.1437 6.4788 2.1363 15 6 9.8751 5.9960 0.9851 16 7 10.3690 5.2548 0.0175 17 14 10.9704 7.2180 1.8775 18 1 11.6044 6.5540 3.0448 19 1 12.0249 7.7053 0.9523 20 1 10.1528 8.3661 2.3450 21 6 2.3111 3.4729 -0.5988 22 7 1.6797 2.3751 -0.9273 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 3.3159 1.4137 1.7382 29 1 3.5525 5.2055 1.1426 30 1 3.9895 3.9502 2.3265 31 1 5.5070 3.5291 -0.0178 32 1 7.5913 2.7592 0.2759 33 1 9.2369 3.4302 0.3802 34 1 8.2648 3.2237 1.8567 35 1 11.3020 5.3429 -0.2330 36 1 2.2557 4.4160 -1.1221 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597244244.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:53 Heat of formation + Delta-G solvation = 29.736666 kcal Electronic energy + Delta-G solvation = -17810.803790 eV Core-core repulsion = 14910.531438 eV Total energy + Delta-G solvation = -2900.272352 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.31537 -38.58767 -35.08631 -33.80783 -33.62507 -30.88127 -30.37474 -29.51557 -25.57855 -25.05611 -23.89655 -22.18820 -20.83383 -20.22425 -19.22148 -17.22293 -16.21280 -15.82554 -15.67578 -14.95082 -14.55781 -14.38745 -14.30236 -14.06135 -13.20112 -13.04232 -12.66108 -12.54177 -12.48059 -12.39854 -11.87496 -11.60197 -11.39631 -10.97051 -10.70366 -10.62767 -10.56397 -10.19003 -9.90491 -9.51812 -8.91537 -8.83752 -8.40015 -8.29033 -8.15970 -5.97561 -4.00275 1.77803 2.35550 2.66160 3.37489 3.42963 3.50503 3.85193 4.21031 4.29789 4.55173 4.61098 4.71487 4.84014 4.92359 5.17532 5.30596 5.35659 5.38056 5.51134 5.68717 5.79420 5.97755 6.24549 6.40984 6.57190 6.68750 6.88606 6.89769 7.00241 7.22520 7.55352 7.60556 7.82172 8.06412 8.24354 8.56715 9.09208 9.36042 9.65250 11.10109 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.052208 B = 0.003845 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.189013 B = 7280.517575 C = 7494.104933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.130 3.870 3 N -0.375 5.375 4 C 0.071 3.929 5 C -0.249 4.249 6 C 0.199 3.801 7 N -0.743 5.743 8 C 0.518 3.482 9 O -0.549 6.549 10 C 0.028 3.972 11 H 0.052 0.948 12 C -0.131 4.131 13 C -0.499 4.499 14 H 0.074 0.926 15 C 0.057 3.943 16 N -0.898 5.898 17 Si 0.899 3.101 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.273 1.273 21 C 0.063 3.937 22 N -0.299 5.299 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.174 0.826 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.395 0.605 32 H 0.011 0.989 33 H 0.092 0.908 34 H 0.030 0.970 35 H 0.260 0.740 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.530 -11.801 -1.099 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.009 3.991 3 N -0.157 5.157 4 C -0.076 4.076 5 C -0.261 4.261 6 C 0.074 3.926 7 N -0.397 5.397 8 C 0.308 3.692 9 O -0.426 6.426 10 C 0.007 3.993 11 H 0.069 0.931 12 C -0.189 4.189 13 C -0.537 4.537 14 H 0.092 0.908 15 C -0.143 4.143 16 N -0.538 5.538 17 Si 0.727 3.273 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.197 1.197 21 C -0.124 4.124 22 N -0.119 5.119 23 H 0.079 0.921 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.191 0.809 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.229 0.771 32 H 0.030 0.970 33 H 0.110 0.890 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -17.411 -11.965 -1.343 21.169 hybrid contribution 1.272 0.569 0.641 1.534 sum -16.139 -11.396 -0.702 19.770 Atomic orbital electron populations 1.22053 0.93860 1.02757 1.03599 1.21674 0.96004 0.77589 1.03802 1.48691 1.35663 1.10132 1.21263 1.22442 0.94612 0.94520 0.96021 1.20212 1.08457 0.95408 1.02016 1.19294 0.81215 0.96263 0.95844 1.46431 1.09384 1.43730 1.40186 1.21939 0.87609 0.77793 0.81887 1.90525 1.83001 1.38866 1.30184 1.18865 0.86550 0.96043 0.97823 0.93073 1.21729 1.03413 0.94597 0.99170 1.21172 0.93809 1.20035 1.18691 0.90774 1.24955 0.97979 0.96202 0.95200 1.69878 1.14418 1.40078 1.29400 0.86463 0.79942 0.81560 0.79309 1.20733 1.21357 1.19732 1.23866 0.95206 0.97461 0.95833 1.77311 1.24063 0.96892 1.13682 0.92103 0.91089 0.90786 0.89785 0.88663 0.80858 0.91497 0.91874 0.77118 0.96994 0.88967 0.95090 0.93048 0.79939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 10.10 37.16 0.38 -0.68 16 2 C 0.13 0.91 7.23 -4.04 -0.03 0.88 16 3 N -0.38 -4.06 3.68 -61.37 -0.23 -4.29 16 4 C 0.07 0.78 11.36 -17.22 -0.20 0.59 16 5 C -0.25 -3.17 5.47 -105.06 -0.57 -3.74 16 6 C 0.20 3.00 6.15 -5.20 -0.03 2.97 16 7 N -0.74 -13.18 5.44 -61.47 -0.33 -13.52 16 8 C 0.52 11.98 7.15 -10.99 -0.08 11.90 16 9 O -0.55 -14.52 15.46 5.55 0.09 -14.43 16 10 C 0.03 0.72 2.64 -92.92 -0.25 0.47 16 11 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 12 C -0.13 -3.05 8.87 37.16 0.33 -2.72 16 13 C -0.50 -14.36 8.37 -34.44 -0.29 -14.65 16 14 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 15 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 16 N -0.90 -25.55 11.32 55.43 0.63 -24.92 16 17 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.06 0.79 11.96 -17.37 -0.21 0.58 16 22 N -0.30 -3.87 12.42 30.62 0.38 -3.49 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.10 0.44 8.07 -51.93 -0.42 0.02 16 28 H 0.17 1.46 8.06 -52.49 -0.42 1.03 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.40 6.38 7.88 -40.82 -0.32 6.06 16 32 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 33 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.18 1.94 8.06 -52.49 -0.42 1.51 16 LS Contribution 309.67 15.07 4.67 4.67 Total: -1.00 -33.41 309.67 -6.03 -39.44 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.17 Total: 2.39 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.04 Total: -2.89 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.45 Total: -46.22 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.09 Total: -14.43 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.41 -6.03 -39.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597244244.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.179 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds