Wall clock time and date at job start Mon Mar 30 2020 04:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47001 * 2 1 4 4 C 1.34954 * 126.03713 * 124.99785 * 3 2 1 5 5 C 1.35315 * 107.74451 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.03620 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.47347 * 90.00376 * 6 5 4 8 8 C 1.34778 * 120.00428 * 179.97438 * 7 6 5 9 9 O 1.21287 * 119.99371 * 0.02562 * 8 7 6 10 10 C 1.50694 * 120.00228 * 179.97438 * 8 7 6 11 11 H 1.09003 * 109.47163 * 60.00026 * 10 8 7 12 12 C 1.53005 * 109.47366 * 300.00385 * 10 8 7 13 13 C 1.50699 * 109.47151 * 180.02562 * 10 8 7 14 14 H 1.07998 * 120.00131 * 0.02562 * 13 10 8 15 15 C 1.37875 * 120.00101 * 180.02562 * 13 10 8 16 16 N 1.31515 * 119.99861 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 120.00054 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47280 * 89.99793 * 17 15 13 19 19 H 1.48506 * 109.47120 * 209.99733 * 17 15 13 20 20 H 1.48496 * 109.47102 * 330.00005 * 17 15 13 21 21 C 1.39867 * 107.92134 * 0.02562 * 5 4 3 22 22 N 1.30834 * 108.20347 * 359.97438 * 21 5 4 23 23 H 1.09002 * 109.47440 * 300.00340 * 1 2 3 24 24 H 1.08998 * 109.47034 * 60.00149 * 1 2 3 25 25 H 1.09001 * 109.47204 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47166 * 239.99637 * 2 1 3 27 27 H 1.08999 * 109.46588 * 119.99558 * 2 1 3 28 28 H 1.08001 * 126.12517 * 359.75938 * 4 3 2 29 29 H 1.09006 * 109.46835 * 209.99807 * 6 5 4 30 30 H 1.09003 * 109.47438 * 329.99807 * 6 5 4 31 31 H 0.97001 * 119.99577 * 359.97438 * 7 6 5 32 32 H 1.08993 * 109.46824 * 59.99738 * 12 10 8 33 33 H 1.09000 * 109.46972 * 180.02562 * 12 10 8 34 34 H 1.09003 * 109.46686 * 299.99933 * 12 10 8 35 35 H 0.97001 * 119.99943 * 180.02562 * 16 15 13 36 36 H 1.08000 * 125.89932 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8731 1.9211 0.8940 5 6 3.0712 3.2138 0.5464 6 6 3.9547 4.1999 1.2660 7 7 5.3073 4.1429 0.7063 8 6 6.2742 4.9432 1.1973 9 8 6.0245 5.7103 2.1030 10 6 7.6657 4.8842 0.6218 11 1 7.6311 5.1332 -0.4388 12 6 8.2302 3.4728 0.7960 13 6 8.5492 5.8704 1.3414 14 1 8.1437 6.4788 2.1363 15 6 9.8751 5.9960 0.9851 16 7 10.3690 5.2548 0.0175 17 14 10.9704 7.2180 1.8775 18 1 11.6044 6.5540 3.0448 19 1 12.0249 7.7053 0.9523 20 1 10.1528 8.3661 2.3450 21 6 2.3111 3.4729 -0.5988 22 7 1.6797 2.3751 -0.9273 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 3.3159 1.4137 1.7382 29 1 3.5525 5.2055 1.1426 30 1 3.9895 3.9502 2.3265 31 1 5.5070 3.5291 -0.0178 32 1 7.5913 2.7592 0.2759 33 1 9.2369 3.4302 0.3802 34 1 8.2648 3.2237 1.8567 35 1 11.3020 5.3429 -0.2330 36 1 2.2557 4.4160 -1.1221 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597244244.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:53 Heat of formation + Delta-G solvation = 6.932622 kcal Electronic energy + Delta-G solvation = -17811.792648 eV Core-core repulsion = 14910.531438 eV Total energy + Delta-G solvation = -2901.261210 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.21369 -40.36623 -36.18257 -35.70241 -34.92080 -32.66479 -31.39610 -30.64442 -27.20186 -26.70843 -24.67071 -23.96529 -21.65267 -21.24659 -20.92041 -18.41395 -18.10745 -17.40287 -16.80554 -16.34874 -16.06253 -16.00998 -15.31160 -14.87954 -14.68267 -14.59696 -14.14128 -13.75769 -13.47090 -13.29507 -13.05374 -12.93653 -12.88247 -12.65476 -12.54853 -12.22555 -12.15555 -11.98437 -11.52941 -11.00078 -10.60558 -10.39427 -10.32749 -9.85165 -9.42329 -8.12030 -6.22334 0.90917 1.42814 1.43143 1.55207 1.61466 1.66437 2.01838 2.44431 2.84655 3.17418 3.54805 3.95944 4.09594 4.13413 4.22459 4.37606 4.43378 4.52078 4.70472 4.79153 4.82897 4.87459 4.96914 5.00654 5.07233 5.19382 5.23951 5.54179 5.63460 5.69012 5.79559 5.98870 6.11691 6.26108 6.70944 6.80737 6.93306 7.43755 7.62695 8.93758 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.052208 B = 0.003845 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.189013 B = 7280.517575 C = 7494.104933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 N -0.372 5.372 4 C 0.084 3.916 5 C -0.268 4.268 6 C 0.205 3.795 7 N -0.720 5.720 8 C 0.521 3.479 9 O -0.589 6.589 10 C 0.022 3.978 11 H 0.038 0.962 12 C -0.117 4.117 13 C -0.528 4.528 14 H 0.049 0.951 15 C 0.018 3.982 16 N -0.913 5.913 17 Si 0.956 3.044 18 H -0.273 1.273 19 H -0.276 1.276 20 H -0.278 1.278 21 C 0.056 3.944 22 N -0.324 5.324 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.127 0.873 28 H 0.204 0.796 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.406 0.594 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.995 -13.497 -0.909 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.000 4.000 3 N -0.154 5.154 4 C -0.064 4.064 5 C -0.280 4.280 6 C 0.081 3.919 7 N -0.373 5.373 8 C 0.310 3.690 9 O -0.469 6.469 10 C 0.001 3.999 11 H 0.056 0.944 12 C -0.175 4.175 13 C -0.566 4.566 14 H 0.068 0.932 15 C -0.181 4.181 16 N -0.552 5.552 17 Si 0.781 3.219 18 H -0.199 1.199 19 H -0.201 1.201 20 H -0.203 1.203 21 C -0.130 4.130 22 N -0.146 5.146 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.118 0.882 26 H 0.110 0.890 27 H 0.145 0.855 28 H 0.220 0.780 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.241 0.759 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -17.914 -13.716 -1.198 22.594 hybrid contribution 1.334 1.003 0.545 1.756 sum -16.580 -12.712 -0.653 20.903 Atomic orbital electron populations 1.22011 0.93535 1.04002 1.02172 1.22091 0.96331 0.75838 1.05733 1.49045 1.34976 1.10969 1.20365 1.22859 0.93504 0.93949 0.96112 1.19968 1.09371 0.95901 1.02770 1.19278 0.79734 0.96843 0.96030 1.46198 1.09629 1.42025 1.39437 1.21480 0.87811 0.78213 0.81543 1.90503 1.83561 1.40814 1.32069 1.18809 0.87969 0.96477 0.96623 0.94403 1.21533 1.02714 0.94264 0.99035 1.21323 0.95076 1.21261 1.18962 0.93249 1.25611 0.98922 0.97682 0.95866 1.69959 1.14846 1.40617 1.29816 0.85593 0.78318 0.79340 0.78625 1.19904 1.20080 1.20328 1.24082 0.95074 0.97955 0.95925 1.77281 1.24839 0.97522 1.14922 0.92836 0.93129 0.88220 0.89045 0.85548 0.77962 0.92252 0.91793 0.75869 0.93160 0.91282 0.95673 0.92670 0.79081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 10.10 71.98 0.73 -0.96 16 2 C 0.12 1.31 7.23 86.38 0.62 1.93 16 3 N -0.37 -7.14 3.68 -348.06 -1.28 -8.42 16 4 C 0.08 1.61 11.36 83.54 0.95 2.56 16 5 C -0.27 -6.36 5.47 -20.15 -0.11 -6.47 16 6 C 0.21 5.98 6.15 85.63 0.53 6.50 16 7 N -0.72 -24.79 5.44 -466.79 -2.54 -27.33 16 8 C 0.52 24.12 7.15 87.65 0.63 24.75 16 9 O -0.59 -31.69 15.46 -3.05 -0.05 -31.74 16 10 C 0.02 1.14 2.64 -12.29 -0.03 1.11 16 11 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 12 C -0.12 -5.38 8.87 71.98 0.64 -4.74 16 13 C -0.53 -30.98 8.37 25.60 0.21 -30.77 16 14 H 0.05 3.09 6.75 -2.91 -0.02 3.07 16 15 C 0.02 1.02 5.30 84.65 0.45 1.47 16 16 N -0.91 -51.86 11.32 21.45 0.24 -51.62 16 17 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 18 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 21 C 0.06 1.34 11.96 85.24 1.02 2.36 16 22 N -0.32 -7.97 12.42 -57.03 -0.71 -8.68 16 23 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.13 0.62 8.07 -2.39 -0.02 0.60 16 28 H 0.20 2.57 8.06 -2.91 -0.02 2.55 16 29 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.41 12.34 7.88 -92.71 -0.73 11.61 16 32 H 0.05 1.86 7.56 -2.39 -0.02 1.84 16 33 H 0.07 3.51 6.07 -2.39 -0.01 3.49 16 34 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 36 H 0.19 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -72.52 309.67 3.67 -68.85 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.35 Total: 13.81 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 5.63 Total: -2.26 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -4.29 Total: -96.05 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.05 Total: -31.74 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -72.52 3.67 -68.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597244244.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.786 kcal (2) G-P(sol) polarization free energy of solvation -72.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds