Wall clock time and date at job start Mon Mar 30 2020 04:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47114 * 2 1 4 4 N 1.40090 * 126.03364 * 270.02195 * 3 2 1 5 5 C 1.30840 * 108.20352 * 179.97438 * 4 3 2 6 6 C 1.39874 * 108.20037 * 359.77702 * 5 4 3 7 7 C 1.34942 * 126.03913 * 89.99932 * 3 2 1 8 8 C 1.50702 * 126.12971 * 359.97438 * 7 3 2 9 9 N 1.46505 * 109.46917 * 275.00376 * 8 7 3 10 10 C 1.34774 * 119.99513 * 179.97438 * 9 8 7 11 11 O 1.21277 * 120.00513 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99464 * 179.97438 * 10 9 8 13 13 H 1.08994 * 109.47551 * 299.99844 * 12 10 9 14 14 C 1.52996 * 109.47211 * 60.00342 * 12 10 9 15 15 C 1.50702 * 109.46869 * 179.97438 * 12 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 12 10 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 12 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 12 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 12 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 H 1.09006 * 109.46930 * 60.00190 * 1 2 3 24 24 H 1.08998 * 109.47614 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47084 * 300.00281 * 1 2 3 26 26 H 1.08996 * 109.46918 * 239.99427 * 2 1 3 27 27 H 1.08998 * 109.46643 * 119.99768 * 2 1 3 28 28 H 1.07996 * 125.89768 * 180.02562 * 5 4 3 29 29 H 1.08005 * 126.03678 * 180.23508 * 6 5 4 30 30 H 1.08998 * 109.47129 * 155.00326 * 8 7 3 31 31 H 1.09002 * 109.46506 * 34.99768 * 8 7 3 32 32 H 0.96995 * 119.99906 * 359.97438 * 9 8 7 33 33 H 1.09001 * 109.47094 * 179.97438 * 14 12 10 34 34 H 1.09003 * 109.46851 * 299.99806 * 14 12 10 35 35 H 1.09003 * 109.47532 * 59.99881 * 14 12 10 36 36 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2926 2.1583 -1.1329 5 6 2.7074 3.3327 -0.7322 6 6 2.7057 3.3429 0.6665 7 6 2.2830 2.1297 1.0912 8 6 2.1286 1.6948 2.5258 9 7 0.7432 1.9049 2.9534 10 6 0.3693 1.5846 4.2080 11 8 1.1795 1.1221 4.9828 12 6 -1.0557 1.8013 4.6480 13 1 -1.3063 2.8584 4.5603 14 6 -1.9937 0.9795 3.7616 15 6 -1.2103 1.3651 6.0822 16 1 -0.3616 0.9709 6.6213 17 6 -2.4340 1.4752 6.7081 18 7 -3.4674 1.9556 6.0517 19 14 -2.6238 0.9417 8.4881 20 1 -2.3417 2.0929 9.3827 21 1 -4.0117 0.4656 8.7169 22 1 -1.6690 -0.1576 8.7801 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.9969 4.1539 -1.3712 29 1 2.9934 4.1719 1.2962 30 1 2.7965 2.2809 3.1570 31 1 2.3797 0.6378 2.6139 32 1 0.0951 2.2745 2.3335 33 1 -3.0243 1.1359 4.0801 34 1 -1.8818 1.2946 2.7241 35 1 -1.7431 -0.0777 3.8493 36 1 -4.3284 2.0327 6.4920 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598557745.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:11 Heat of formation + Delta-G solvation = 8.784971 kcal Electronic energy + Delta-G solvation = -18472.864293 eV Core-core repulsion = 15571.683407 eV Total energy + Delta-G solvation = -2901.180886 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.30888 -40.47575 -36.08847 -35.74886 -35.24153 -32.81609 -31.45899 -30.28422 -27.38970 -27.09897 -24.70742 -24.16070 -22.06309 -21.19265 -20.63824 -18.49384 -18.17382 -17.25660 -17.01487 -16.37959 -16.17926 -15.73388 -15.57780 -15.05026 -14.71932 -14.60788 -14.27669 -13.85924 -13.49913 -13.45135 -13.18837 -12.95930 -12.88764 -12.65756 -12.60077 -12.24077 -12.16607 -12.00317 -11.63030 -11.03290 -10.71710 -10.47591 -10.20083 -10.06264 -9.54398 -8.13877 -6.24172 0.70789 1.42407 1.43493 1.52838 1.55026 1.82207 1.90845 2.40673 2.61819 3.16239 3.40600 3.61017 4.02592 4.07896 4.17744 4.27007 4.33259 4.59948 4.65771 4.71602 4.74660 4.81767 4.89522 4.94679 5.01790 5.18339 5.20020 5.44947 5.50182 5.73434 5.75446 5.93882 6.00559 6.21404 6.66843 6.72256 6.85836 7.39899 7.50411 8.91892 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.037389 B = 0.004934 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.696721 B = 5673.822019 C = 5911.845432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.120 3.880 3 N -0.364 5.364 4 N -0.318 5.318 5 C 0.043 3.957 6 C -0.258 4.258 7 C 0.061 3.939 8 C 0.189 3.811 9 N -0.721 5.721 10 C 0.528 3.472 11 O -0.581 6.581 12 C 0.024 3.976 13 H 0.040 0.960 14 C -0.117 4.117 15 C -0.527 4.527 16 H 0.051 0.949 17 C 0.020 3.980 18 N -0.912 5.912 19 Si 0.955 3.045 20 H -0.275 1.275 21 H -0.276 1.276 22 H -0.277 1.277 23 H 0.059 0.941 24 H 0.094 0.906 25 H 0.050 0.950 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.214 0.786 29 H 0.163 0.837 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.406 0.594 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.026 0.974 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.475 0.036 -14.095 16.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.000 4.000 3 N -0.148 5.148 4 N -0.140 5.140 5 C -0.141 4.141 6 C -0.288 4.288 7 C -0.067 4.067 8 C 0.064 3.936 9 N -0.375 5.375 10 C 0.317 3.683 11 O -0.460 6.460 12 C 0.003 3.997 13 H 0.057 0.943 14 C -0.175 4.175 15 C -0.565 4.565 16 H 0.069 0.931 17 C -0.180 4.180 18 N -0.551 5.551 19 Si 0.781 3.219 20 H -0.201 1.201 21 H -0.201 1.201 22 H -0.202 1.202 23 H 0.078 0.922 24 H 0.113 0.887 25 H 0.069 0.931 26 H 0.126 0.874 27 H 0.117 0.883 28 H 0.231 0.769 29 H 0.180 0.820 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.242 0.758 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.566 -1.163 -14.534 16.911 hybrid contribution -0.346 0.508 1.435 1.561 sum 8.220 -0.655 -13.099 15.479 Atomic orbital electron populations 1.22172 0.93778 1.04229 1.02288 1.21907 0.95702 0.77126 1.05287 1.48936 1.50368 1.12634 1.02839 1.77315 1.22569 1.05334 1.08773 1.24369 0.98542 0.96015 0.95214 1.21629 1.13319 0.98174 0.95691 1.21008 1.02540 0.93455 0.89681 1.19651 0.84587 1.01652 0.87717 1.46045 1.11156 1.66817 1.13451 1.21476 0.91432 0.74920 0.80448 1.90524 1.55139 1.46085 1.54225 1.18807 0.87282 0.97604 0.95999 0.94267 1.21534 1.02233 0.97616 0.96100 1.21287 0.95770 1.42566 0.96912 0.93097 1.25591 0.95418 0.95114 1.01833 1.69956 1.01111 1.46307 1.37726 0.85600 0.77273 0.78564 0.80480 1.20118 1.20143 1.20212 0.92185 0.88690 0.93093 0.87364 0.88297 0.76939 0.81953 0.89240 0.90828 0.75828 0.91245 0.93488 0.95445 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.25 10.24 71.98 0.74 -2.51 16 2 C 0.12 2.32 6.96 86.38 0.60 2.92 16 3 N -0.36 -8.69 3.61 -334.71 -1.21 -9.90 16 4 N -0.32 -7.94 12.58 -57.02 -0.72 -8.66 16 5 C 0.04 0.90 12.03 85.24 1.03 1.92 16 6 C -0.26 -5.68 10.72 21.99 0.24 -5.44 16 7 C 0.06 1.49 6.30 41.41 0.26 1.75 16 8 C 0.19 5.18 5.84 85.63 0.50 5.68 16 9 N -0.72 -23.35 5.34 -466.78 -2.49 -25.84 16 10 C 0.53 23.08 7.15 87.66 0.63 23.70 16 11 O -0.58 -29.46 15.46 -3.02 -0.05 -29.51 16 12 C 0.02 1.19 2.64 -12.29 -0.03 1.16 16 13 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 14 C -0.12 -5.15 8.87 71.98 0.64 -4.51 16 15 C -0.53 -29.87 8.37 25.60 0.21 -29.65 16 16 H 0.05 3.08 6.75 -2.91 -0.02 3.06 16 17 C 0.02 1.08 5.31 84.66 0.45 1.53 16 18 N -0.91 -50.58 11.33 21.45 0.24 -50.34 16 19 Si 0.95 44.29 29.54 68.60 2.03 46.31 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 23 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 24 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.05 1.18 7.75 -2.39 -0.02 1.16 16 26 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.10 1.79 7.15 -2.39 -0.02 1.77 16 28 H 0.21 2.77 8.06 -2.91 -0.02 2.74 16 29 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 30 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.07 2.02 7.24 -2.39 -0.02 2.00 16 32 H 0.41 11.97 7.59 -92.71 -0.70 11.26 16 33 H 0.07 3.43 6.08 -2.39 -0.01 3.41 16 34 H 0.05 1.68 7.56 -2.39 -0.02 1.66 16 35 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.26 13.91 8.31 -92.70 -0.77 13.14 16 Total: -1.00 -67.14 306.99 3.44 -63.70 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.38 Total: 17.69 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 5.26 Total: -3.46 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -4.17 Total: -94.74 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.05 Total: -29.51 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -67.14 3.44 -63.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598557745.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.488 kcal (2) G-P(sol) polarization free energy of solvation -67.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds