Wall clock time and date at job start Mon Mar 30 2020 04:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53006 * 109.47013 * 2 1 4 4 N 1.46501 * 109.47553 * 120.00148 * 2 1 3 5 5 C 1.36936 * 119.99946 * 120.66629 * 4 2 1 6 6 H 1.07996 * 120.00444 * 36.99031 * 5 4 2 7 7 C 1.38816 * 119.99662 * 216.71413 * 5 4 2 8 8 N 1.31620 * 119.99835 * 216.90650 * 7 5 4 9 9 Si 1.86792 * 120.00124 * 36.90802 * 7 5 4 10 10 H 1.48501 * 109.47176 * 86.65914 * 9 7 5 11 11 H 1.48502 * 109.47335 * 206.66337 * 9 7 5 12 12 H 1.48499 * 109.47273 * 326.66458 * 9 7 5 13 13 C 1.46500 * 119.99718 * 300.66577 * 4 2 1 14 14 C 1.50700 * 109.46816 * 264.38634 * 13 4 2 15 15 N 1.30283 * 126.28060 * 89.69953 * 14 13 4 16 16 N 1.28674 * 109.37787 * 179.82238 * 15 14 13 17 17 C 1.30269 * 109.37900 * 0.43974 * 16 15 14 18 18 C 1.50703 * 126.27801 * 179.73012 * 17 16 15 19 19 C 1.53001 * 117.49983 * 8.74767 * 18 17 16 20 20 C 1.53002 * 117.50002 * 300.08969 * 18 17 16 21 21 O 1.34360 * 107.44114 * 359.73085 * 17 16 15 22 22 H 1.09000 * 109.47306 * 299.99679 * 1 2 3 23 23 H 1.08995 * 109.47559 * 59.99780 * 1 2 3 24 24 H 1.09004 * 109.46722 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47306 * 240.00321 * 2 1 3 26 26 H 1.09000 * 109.46889 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47117 * 300.00054 * 3 2 1 28 28 H 1.09000 * 109.46822 * 60.00025 * 3 2 1 29 29 H 0.96998 * 119.99760 * 179.97438 * 8 7 5 30 30 H 1.08995 * 109.47025 * 24.38866 * 13 4 2 31 31 H 1.09000 * 109.47105 * 144.39382 * 13 4 2 32 32 H 1.09003 * 115.55187 * 154.41412 * 18 17 16 33 33 H 1.09000 * 117.49812 * 0.02562 * 19 18 17 34 34 H 1.09003 * 117.49837 * 145.01381 * 19 18 17 35 35 H 1.09000 * 117.49626 * 214.97595 * 20 18 17 36 36 H 1.08998 * 117.49930 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8169 -1.7959 1.0704 6 1 3.5520 -1.8441 0.2808 7 6 2.6853 -2.8521 1.9616 8 7 3.7512 -3.5130 2.3608 9 14 0.9955 -3.3355 2.5941 10 1 0.3663 -4.2896 1.6459 11 1 1.1306 -3.9779 3.9262 12 1 0.1461 -2.1233 2.7131 13 6 1.6525 -0.1987 2.5267 14 6 2.7473 0.6947 3.0504 15 7 2.8404 1.9826 2.8771 16 7 3.8992 2.4171 3.4653 17 6 4.5223 1.4198 4.0259 18 6 5.8070 1.4984 4.8097 19 6 6.3451 2.8904 5.1466 20 6 7.0440 2.0352 4.0867 21 8 3.8093 0.3085 3.7772 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1299 1.4425 -0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6765 1.9563 0.8900 29 1 3.6593 -4.2508 2.9838 30 1 0.7224 0.3659 2.4622 31 1 1.5186 -1.0435 3.2023 32 1 5.9575 0.7089 5.5461 33 1 5.7697 3.7495 4.8017 34 1 6.8499 3.0167 6.1044 35 1 8.0083 1.5992 4.3478 36 1 6.9286 2.3312 3.0441 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686011906.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:57 Heat of formation + Delta-G solvation = 89.205604 kcal Electronic energy + Delta-G solvation = -19111.832155 eV Core-core repulsion = 16214.138570 eV Total energy + Delta-G solvation = -2897.693586 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.37402 -37.35200 -36.92811 -35.29205 -32.70431 -31.50407 -29.80899 -26.81043 -26.43984 -24.23732 -23.45276 -22.44102 -21.84571 -20.71570 -19.19553 -17.34110 -16.89058 -16.30960 -15.79897 -15.00841 -14.78494 -14.43409 -14.01111 -13.51518 -12.74749 -12.59224 -12.40574 -12.27650 -12.02645 -11.67375 -11.59145 -11.47435 -11.12699 -11.05471 -10.83415 -10.72990 -10.65742 -10.56698 -10.49782 -10.16531 -9.94058 -9.68292 -8.61522 -8.58046 -7.15885 -6.29649 -3.55563 1.87310 2.91781 3.05658 3.24830 3.36858 3.40526 3.88181 4.36913 4.41751 4.72639 4.79890 4.88836 5.00182 5.12220 5.21078 5.60226 5.66357 5.73821 5.84500 5.91779 6.05686 6.06764 6.11628 6.20098 6.21575 6.24748 6.32668 6.41937 6.47185 6.55969 6.64483 6.95804 7.08764 7.77733 8.21878 8.74931 9.06600 9.49200 9.90150 10.84647 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.021231 B = 0.008397 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.532254 B = 3333.664414 C = 4107.158711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.160 3.840 3 C -0.164 4.164 4 N -0.570 5.570 5 C -0.299 4.299 6 H 0.078 0.922 7 C 0.058 3.942 8 N -0.856 5.856 9 Si 0.843 3.157 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.260 1.260 13 C 0.223 3.777 14 C 0.182 3.818 15 N -0.314 5.314 16 N -0.296 5.296 17 C 0.161 3.839 18 C -0.072 4.072 19 C -0.150 4.150 20 C -0.155 4.155 21 O -0.205 6.205 22 H 0.048 0.952 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.267 0.733 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.132 0.868 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.592 8.313 3.444 9.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.054 3.946 3 C -0.223 4.223 4 N -0.290 5.290 5 C -0.427 4.427 6 H 0.096 0.904 7 C -0.147 4.147 8 N -0.491 5.491 9 Si 0.669 3.331 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.185 1.185 13 C 0.093 3.907 14 C -0.031 4.031 15 N -0.162 5.162 16 N -0.144 5.144 17 C -0.050 4.050 18 C -0.092 4.092 19 C -0.187 4.187 20 C -0.193 4.193 21 O -0.082 6.082 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.150 0.850 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.399 9.307 3.105 9.819 hybrid contribution -0.502 -1.732 0.731 1.946 sum -0.103 7.575 3.836 8.492 Atomic orbital electron populations 1.22307 0.98104 1.01365 1.00533 1.20687 0.91720 0.92057 0.90086 1.22303 1.01030 0.97587 1.01344 1.44201 1.57891 1.28749 0.98195 1.18636 1.13415 0.92873 1.17740 0.90434 1.25436 0.96396 0.96379 0.96501 1.70136 1.28286 1.21630 1.29089 0.87479 0.88460 0.79456 0.77718 1.20843 1.21796 1.18534 1.20323 0.88728 0.93293 0.88365 1.30616 0.89984 0.92824 0.89708 1.74248 1.13312 1.08673 1.19927 1.74109 1.03003 1.26562 1.10710 1.26538 0.97170 0.80478 1.00862 1.19944 0.87007 1.00722 1.01515 1.23086 1.02253 0.93060 1.00319 1.23113 0.94955 1.02420 0.98799 1.84926 1.31205 1.36980 1.55056 0.93336 0.93187 0.92725 0.90696 0.93578 0.93763 0.91418 0.92299 0.89013 0.90283 0.85039 0.87283 0.87637 0.87485 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.17 37.15 0.34 -2.41 16 2 C 0.16 3.14 3.32 -67.93 -0.23 2.92 16 3 C -0.16 -3.05 8.53 37.16 0.32 -2.73 16 4 N -0.57 -13.15 1.96 -167.03 -0.33 -13.47 16 5 C -0.30 -8.03 9.62 -15.06 -0.14 -8.17 16 6 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 7 C 0.06 1.58 5.02 -17.43 -0.09 1.50 16 8 N -0.86 -24.67 13.97 55.49 0.78 -23.90 16 9 Si 0.84 20.06 26.56 -169.99 -4.52 15.55 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.26 -5.76 5.81 56.52 0.33 -5.43 16 13 C 0.22 4.88 4.30 -5.19 -0.02 4.85 16 14 C 0.18 4.11 7.48 -12.94 -0.10 4.01 16 15 N -0.31 -6.87 10.31 32.55 0.34 -6.54 16 16 N -0.30 -6.18 11.83 32.55 0.39 -5.79 16 17 C 0.16 3.20 8.00 -12.94 -0.10 3.10 16 18 C -0.07 -1.06 6.33 -91.77 -0.58 -1.64 16 19 C -0.15 -1.71 10.15 -26.69 -0.27 -1.99 16 20 C -0.15 -1.91 10.24 -26.69 -0.27 -2.18 16 21 O -0.20 -4.74 10.87 5.39 0.06 -4.68 16 22 H 0.05 0.78 6.64 -51.93 -0.34 0.44 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 1.49 7.89 -51.93 -0.41 1.08 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.30 5.96 -51.93 -0.31 0.99 16 29 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 30 H 0.09 1.76 6.40 -51.93 -0.33 1.43 16 31 H 0.08 1.80 4.23 -51.93 -0.22 1.58 16 32 H 0.13 1.71 8.14 -51.93 -0.42 1.29 16 33 H 0.11 1.36 7.91 -51.93 -0.41 0.95 16 34 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 298.24 15.07 4.49 4.49 Total: -1.00 -30.31 298.24 -4.98 -35.29 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -5.04 Total: 1.80 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -1.15 Total: -2.76 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 1.17 Total: -49.70 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: 0.06 Total: -4.68 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.52 Total: 15.55 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.31 -4.98 -35.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686011906.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.499 kcal (2) G-P(sol) polarization free energy of solvation -30.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds