Wall clock time and date at job start Mon Mar 30 2020 04:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.47136 * 2 1 4 4 C 1.35759 * 116.99669 * 180.02562 * 3 2 1 5 5 N 1.32256 * 120.11856 * 0.02562 * 4 3 2 6 6 C 1.32414 * 120.01664 * 179.97438 * 5 4 3 7 7 C 1.37949 * 120.25971 * 0.02562 * 6 5 4 8 8 N 1.32396 * 120.23757 * 0.02562 * 7 6 5 9 9 C 1.32458 * 119.97120 * 359.97438 * 8 7 6 10 10 N 1.39185 * 120.12680 * 180.02562 * 9 8 7 11 11 C 1.46901 * 111.00169 * 236.02933 * 10 9 8 12 12 C 1.52996 * 109.47273 * 55.69218 * 11 10 9 13 13 C 1.46904 * 110.99825 * 359.97438 * 10 9 8 14 14 C 1.50698 * 109.47112 * 164.70326 * 13 10 9 15 15 H 1.08004 * 120.00244 * 355.07115 * 14 13 10 16 16 C 1.37879 * 119.99939 * 175.08044 * 14 13 10 17 17 N 1.31510 * 120.00070 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99712 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47300 * 89.99708 * 18 16 14 20 20 H 1.48503 * 109.46668 * 209.99609 * 18 16 14 21 21 H 1.48497 * 109.46957 * 329.99324 * 18 16 14 22 22 H 1.09004 * 109.47269 * 299.99745 * 1 2 3 23 23 H 1.08993 * 109.47497 * 59.99748 * 1 2 3 24 24 H 1.09000 * 109.47555 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46819 * 240.00479 * 2 1 3 26 26 H 1.08997 * 109.47220 * 120.00680 * 2 1 3 27 27 H 1.08008 * 119.86946 * 179.97438 * 6 5 4 28 28 H 1.08008 * 119.88506 * 179.71774 * 7 6 5 29 29 H 1.09003 * 109.46931 * 175.69488 * 11 10 9 30 30 H 1.09001 * 109.46770 * 295.69222 * 11 10 9 31 31 H 1.08993 * 109.47350 * 64.44839 * 12 11 10 32 32 H 1.09000 * 109.47022 * 184.45205 * 12 11 10 33 33 H 1.09007 * 109.47367 * 304.44860 * 12 11 10 34 34 H 1.09003 * 109.46706 * 284.69840 * 13 10 9 35 35 H 1.08989 * 109.47137 * 44.69893 * 13 10 9 36 36 H 0.96999 * 120.00101 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3522 1.5251 -0.0005 5 7 4.1600 0.4778 -0.0015 6 6 5.4724 0.6536 -0.0026 7 6 6.0032 1.9268 -0.0021 8 7 5.2041 2.9824 -0.0001 9 6 3.8898 2.8173 0.0010 10 7 3.0466 3.9247 0.0026 11 6 2.1190 3.8785 1.1407 12 6 2.9142 3.7579 2.4422 13 6 3.8189 5.1744 0.0035 14 6 2.9170 6.3225 -0.3697 15 1 1.8950 6.1332 -0.6631 16 6 3.3966 7.6148 -0.3367 17 7 4.6409 7.8455 0.0209 18 14 2.2787 9.0380 -0.8000 19 1 1.5772 9.5313 0.4123 20 1 3.0911 10.1358 -1.3831 21 1 1.2794 8.5780 -1.7975 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 6.1298 -0.2033 -0.0030 28 1 7.0747 2.0632 0.0017 29 1 1.5240 4.7916 1.1618 30 1 1.4592 3.0171 1.0369 31 1 3.5152 4.6558 2.5854 32 1 2.2256 3.6441 3.2795 33 1 3.5684 2.8876 2.3890 34 1 4.2323 5.3453 0.9975 35 1 4.6309 5.1002 -0.7198 36 1 4.9782 8.7546 0.0445 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686312111.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:35 Heat of formation + Delta-G solvation = -0.219153 kcal Electronic energy + Delta-G solvation = -18988.975011 eV Core-core repulsion = 16087.403677 eV Total energy + Delta-G solvation = -2901.571334 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.41637 -39.42736 -38.82877 -34.90300 -34.58524 -32.76918 -31.54433 -30.61862 -28.55780 -26.10023 -24.97311 -24.37719 -23.54416 -21.85521 -19.48536 -18.89333 -18.33470 -17.68211 -17.50292 -16.66450 -16.26291 -15.79708 -15.42965 -15.17118 -14.97168 -14.38206 -14.13772 -13.75962 -13.55076 -13.39539 -13.27391 -12.91058 -12.78739 -12.64244 -12.52885 -12.28686 -12.15476 -12.06079 -11.74346 -11.70473 -11.32686 -10.63222 -10.28105 -10.09771 -8.72456 -8.18411 -6.30186 -0.02411 0.20095 1.41581 1.43495 1.55008 1.92087 2.39713 2.66818 2.94616 3.13530 3.23683 3.53045 3.77679 4.11693 4.13795 4.16375 4.25895 4.35910 4.40679 4.48116 4.51488 4.79896 4.84383 4.89686 4.99597 5.09623 5.18525 5.26993 5.33348 5.38499 5.63846 5.96576 5.98969 6.16118 6.32664 6.61073 6.79220 7.00198 7.38547 8.92050 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.023986 B = 0.006769 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.055240 B = 4135.765263 C = 4866.599940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.057 3.943 3 O -0.302 6.302 4 C 0.249 3.751 5 N -0.485 5.485 6 C 0.050 3.950 7 C 0.029 3.971 8 N -0.484 5.484 9 C 0.253 3.747 10 N -0.473 5.473 11 C 0.062 3.938 12 C -0.165 4.165 13 C 0.223 3.777 14 C -0.533 4.533 15 H 0.063 0.937 16 C 0.006 3.994 17 N -0.930 5.930 18 Si 0.970 3.030 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.266 1.266 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.103 0.897 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.215 0.785 28 H 0.198 0.802 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.037 0.963 32 H 0.088 0.912 33 H 0.033 0.967 34 H -0.011 1.011 35 H 0.008 0.992 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.601 -16.629 2.547 17.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.018 4.018 3 O -0.208 6.208 4 C 0.062 3.938 5 N -0.215 5.215 6 C -0.107 4.107 7 C -0.130 4.130 8 N -0.205 5.205 9 C 0.015 3.985 10 N -0.190 5.190 11 C -0.064 4.064 12 C -0.223 4.223 13 C 0.098 3.902 14 C -0.571 4.571 15 H 0.081 0.919 16 C -0.192 4.192 17 N -0.569 5.569 18 Si 0.795 3.205 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.190 1.190 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.122 0.878 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.232 0.768 28 H 0.215 0.785 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.052 0.948 34 H 0.007 0.993 35 H 0.026 0.974 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.057 -16.273 2.145 16.907 hybrid contribution 0.527 0.894 0.240 1.065 sum -3.530 -15.379 2.385 15.958 Atomic orbital electron populations 1.21823 0.91003 1.04245 1.03235 1.22866 0.96408 0.80327 1.02207 1.86384 1.15127 1.31683 1.87603 1.20192 0.85849 0.89248 0.98508 1.68055 1.06582 1.31312 1.15540 1.23873 0.89981 0.99204 0.97686 1.24058 1.02176 0.88539 0.98180 1.68651 1.02939 1.35825 1.13077 1.20333 0.89204 0.90304 0.98690 1.59313 1.17518 1.01859 1.40276 1.22242 0.94624 1.03821 0.85676 1.22228 1.00710 0.99960 0.99440 1.19257 0.92002 0.83850 0.95092 1.21469 0.98517 0.91446 1.45669 0.91907 1.25882 0.96646 1.01676 0.95027 1.70113 1.16433 1.21550 1.48842 0.85372 0.78446 0.77969 0.78759 1.19435 1.20757 1.19044 0.91561 0.92138 0.87798 0.91985 0.91483 0.76806 0.78506 0.89992 0.88202 0.94375 0.89271 0.94794 0.99295 0.97399 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 10.28 71.98 0.74 -1.88 16 2 C 0.06 1.36 6.05 71.98 0.44 1.80 16 3 O -0.30 -10.02 7.46 -90.86 -0.68 -10.70 16 4 C 0.25 9.08 7.06 85.05 0.60 9.68 16 5 N -0.49 -14.96 9.39 -307.76 -2.89 -17.85 16 6 C 0.05 1.27 11.20 84.54 0.95 2.22 16 7 C 0.03 0.88 11.20 84.54 0.95 1.82 16 8 N -0.48 -20.48 8.67 -192.18 -1.67 -22.15 16 9 C 0.25 10.86 4.80 133.19 0.64 11.50 16 10 N -0.47 -22.53 4.63 -705.10 -3.26 -25.79 16 11 C 0.06 2.51 5.58 86.30 0.48 3.00 16 12 C -0.16 -6.21 9.37 71.98 0.67 -5.54 16 13 C 0.22 12.56 4.00 85.56 0.34 12.90 16 14 C -0.53 -31.11 8.39 25.60 0.21 -30.89 16 15 H 0.06 3.59 7.68 -2.91 -0.02 3.56 16 16 C 0.01 0.36 5.46 84.66 0.46 0.83 16 17 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 18 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 1.46 8.11 -2.39 -0.02 1.44 16 26 H 0.07 1.50 8.11 -2.39 -0.02 1.48 16 27 H 0.22 3.11 8.06 -2.91 -0.02 3.08 16 28 H 0.20 4.36 8.06 -2.91 -0.02 4.34 16 29 H 0.08 3.50 7.18 -2.39 -0.02 3.48 16 30 H 0.10 3.62 5.73 -2.39 -0.01 3.61 16 31 H 0.04 1.65 6.61 -2.39 -0.02 1.63 16 32 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.03 1.27 6.80 -2.38 -0.02 1.26 16 34 H -0.01 -0.65 6.24 -2.39 -0.01 -0.67 16 35 H 0.01 0.49 7.28 -2.39 -0.02 0.47 16 36 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -72.36 298.43 1.37 -71.00 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.07 Total: 9.93 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 6.48 Total: 5.43 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -7.54 Total: -122.57 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -0.68 Total: -10.70 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -72.36 1.37 -71.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686312111.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.778 kcal (2) G-P(sol) polarization free energy of solvation -72.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds