Wall clock time and date at job start Mon Mar 30 2020 04:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.57426 * 2 1 4 4 C 1.53118 * 109.52174 * 239.84383 * 2 1 3 5 5 C 1.53034 * 109.28039 * 182.44089 * 4 2 1 6 6 N 1.46845 * 109.52348 * 59.17707 * 5 4 2 7 7 C 1.46931 * 111.22324 * 298.25772 * 6 5 4 8 8 C 1.53038 * 109.47668 * 61.71486 * 7 6 5 9 9 H 1.08993 * 109.50636 * 180.88293 * 8 7 6 10 10 C 1.50704 * 109.50331 * 60.80022 * 8 7 6 11 11 O 1.21289 * 120.00516 * 278.09665 * 10 8 7 12 12 N 1.34778 * 119.99426 * 98.09721 * 10 8 7 13 13 C 1.37103 * 119.99703 * 176.16749 * 12 10 8 14 14 H 1.08002 * 120.00489 * 348.25755 * 13 12 10 15 15 C 1.38947 * 120.00075 * 168.25263 * 13 12 10 16 16 N 1.31408 * 119.99969 * 337.13094 * 15 13 12 17 17 Si 1.86803 * 119.99946 * 157.12555 * 15 13 12 18 18 H 1.48495 * 109.47320 * 265.02471 * 17 15 13 19 19 H 1.48499 * 109.47046 * 145.02689 * 17 15 13 20 20 H 1.48497 * 109.47219 * 25.02779 * 17 15 13 21 21 C 1.46498 * 120.00463 * 356.16233 * 12 10 8 22 22 C 1.47198 * 109.47553 * 277.92505 * 21 12 10 23 23 N 5.52170 * 114.19083 * 116.87552 * 2 1 3 24 24 H 1.09001 * 109.47313 * 299.84104 * 1 2 3 25 25 H 1.09003 * 109.47151 * 59.83773 * 1 2 3 26 26 H 1.09004 * 109.47294 * 179.84153 * 1 2 3 27 27 H 1.08996 * 109.50571 * 302.37934 * 4 2 1 28 28 H 1.09006 * 109.50575 * 62.46010 * 4 2 1 29 29 H 1.09001 * 109.46969 * 179.19471 * 5 4 2 30 30 H 1.09005 * 109.46475 * 299.16355 * 5 4 2 31 31 H 1.00900 * 111.00025 * 174.16230 * 6 5 4 32 32 H 1.08994 * 109.44902 * 301.73512 * 7 6 5 33 33 H 1.08999 * 109.51700 * 181.73557 * 7 6 5 34 34 H 0.97006 * 120.00360 * 179.97438 * 16 15 13 35 35 H 1.09004 * 109.46961 * 37.92234 * 21 12 10 36 36 H 1.08998 * 109.47147 * 157.91901 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7250 -1.2478 5 6 3.5707 -0.7752 -1.2117 6 7 4.0102 -1.4789 -0.0001 7 6 3.5709 -0.7752 1.2126 8 6 2.0417 -0.7251 1.2478 9 1 1.7156 -0.1895 2.1393 10 6 1.4928 -2.1283 1.2748 11 8 1.3853 -2.7575 0.2435 12 7 1.1213 -2.6840 2.4451 13 6 0.5491 -3.9299 2.4613 14 1 0.2223 -4.3861 1.5386 15 6 0.3899 -4.6057 3.6649 16 7 1.1495 -4.3033 4.6937 17 14 -0.9041 -5.9439 3.8205 18 1 -2.1486 -5.3655 4.3878 19 1 -0.4026 -7.0155 4.7180 20 1 -1.1898 -6.5146 2.4797 21 6 1.3288 -1.9570 3.6999 22 6 2.7195 -2.1375 4.1475 23 7 3.7926 -2.2769 4.4928 24 1 -0.3634 0.5114 0.8914 25 1 -0.3633 0.5164 -0.8885 26 1 -0.3634 -1.0277 -0.0028 27 1 1.6447 -1.7399 -1.2675 28 1 1.7155 -0.1893 -2.1394 29 1 3.9378 -1.3033 -2.0918 30 1 3.9674 0.2401 -1.2060 31 1 5.0108 -1.6086 -0.0002 32 1 3.9675 0.2400 1.2069 33 1 3.9373 -1.3033 2.0929 34 1 1.0381 -4.7749 5.5341 35 1 1.1328 -0.8964 3.5421 36 1 0.6495 -2.3428 4.4600 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694284103.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:40 Heat of formation + Delta-G solvation = 10.140262 kcal Electronic energy + Delta-G solvation = -19691.219765 eV Core-core repulsion = 16790.097648 eV Total energy + Delta-G solvation = -2901.122116 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.83724 -37.18970 -35.59074 -34.25672 -33.04764 -31.92154 -30.41138 -27.53292 -26.99790 -24.97134 -22.85049 -21.71848 -20.49189 -18.35511 -17.71247 -16.65632 -16.19208 -15.67865 -14.61817 -14.52776 -14.07683 -13.94994 -13.63447 -13.18537 -12.97503 -12.74589 -12.47289 -12.17361 -12.07170 -11.72112 -11.53681 -11.35827 -11.32392 -11.13145 -10.81786 -10.57750 -10.49257 -10.30528 -10.18125 -9.96325 -9.73927 -9.14162 -8.24639 -7.95160 -7.80415 -6.41490 -3.86460 3.15067 3.26959 3.31422 3.61722 3.84874 4.01880 4.16269 4.53936 4.85859 4.95615 5.04567 5.17321 5.33151 5.34873 5.56546 5.71406 5.73942 5.78648 5.83726 5.97032 6.05605 6.11612 6.16831 6.23848 6.34247 6.47710 6.52699 6.69042 6.70763 7.17131 7.43166 7.55993 7.75304 8.02733 8.41407 8.70709 9.14605 9.32825 9.92322 10.64006 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.025024 B = 0.008513 C = 0.007383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.656719 B = 3288.396480 C = 3791.648975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.069 4.069 3 H 0.058 0.942 4 C -0.136 4.136 5 C 0.069 3.931 6 N -0.674 5.674 7 C 0.073 3.927 8 C -0.105 4.105 9 H 0.081 0.919 10 C 0.483 3.517 11 O -0.547 6.547 12 N -0.452 5.452 13 C -0.304 4.304 14 H 0.109 0.891 15 C 0.027 3.973 16 N -0.883 5.883 17 Si 0.923 3.077 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.270 1.270 21 C 0.211 3.789 22 C 0.246 3.754 23 N -0.476 5.476 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.123 0.877 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.014 0.986 31 H 0.335 0.665 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.270 0.730 35 H 0.080 0.920 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.110 9.721 -4.709 10.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 H 0.077 0.923 4 C -0.173 4.173 5 C -0.060 4.060 6 N -0.305 5.305 7 C -0.057 4.057 8 C -0.127 4.127 9 H 0.099 0.901 10 C 0.272 3.728 11 O -0.428 6.428 12 N -0.173 5.173 13 C -0.431 4.431 14 H 0.127 0.873 15 C -0.175 4.175 16 N -0.524 5.524 17 Si 0.750 3.250 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.194 1.194 21 C 0.083 3.917 22 C -0.072 4.072 23 N -0.156 5.156 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.141 0.859 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.032 0.968 31 H 0.153 0.847 32 H 0.046 0.954 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.117 8.667 -4.547 9.788 hybrid contribution -0.175 0.122 0.377 0.433 sum -0.293 8.790 -4.170 9.733 Atomic orbital electron populations 1.21845 0.95017 1.03021 1.00619 1.20910 0.95869 0.97377 0.94670 0.92326 1.22122 0.94351 1.05409 0.95383 1.21815 0.96940 0.94686 0.92587 1.60081 1.17539 1.51568 1.01322 1.21782 0.94203 0.95946 0.93764 1.21446 0.95670 0.96459 0.99143 0.90101 1.19632 0.81180 0.87880 0.84125 1.90344 1.56756 1.63783 1.31894 1.43724 1.54280 1.16515 1.02769 1.19752 1.34472 0.93448 0.95392 0.87319 1.25184 0.97784 0.98793 0.95749 1.69952 1.35263 1.43216 1.03926 0.85940 0.80585 0.79987 0.78444 1.20372 1.21269 1.19400 1.19010 0.86580 0.95513 0.90562 1.29584 0.94803 0.90756 0.92075 1.80904 1.13883 1.10879 1.09975 0.93180 0.93238 0.91258 0.85882 0.93326 0.91511 0.96790 0.84727 0.95437 0.90638 0.91909 0.90239 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.91 37.16 0.33 -1.85 16 2 C -0.07 -1.07 2.54 -90.50 -0.23 -1.30 16 3 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.14 -2.20 4.98 -26.65 -0.13 -2.33 16 5 C 0.07 1.05 6.55 -3.84 -0.03 1.03 16 6 N -0.67 -11.74 6.21 -113.76 -0.71 -12.44 16 7 C 0.07 1.26 5.98 -3.79 -0.02 1.24 16 8 C -0.11 -1.85 2.01 -91.69 -0.18 -2.03 16 9 H 0.08 1.26 5.73 -51.93 -0.30 0.97 16 10 C 0.48 10.65 5.11 -10.98 -0.06 10.59 16 11 O -0.55 -13.58 12.20 5.55 0.07 -13.52 16 12 N -0.45 -10.47 2.61 -117.93 -0.31 -10.78 16 13 C -0.30 -7.80 9.40 -14.93 -0.14 -7.94 16 14 H 0.11 2.97 7.35 -52.49 -0.39 2.58 16 15 C 0.03 0.67 4.91 -17.47 -0.09 0.58 16 16 N -0.88 -22.26 9.52 55.50 0.53 -21.73 16 17 Si 0.92 19.78 29.61 -169.99 -5.03 14.74 16 18 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 C 0.21 4.25 4.89 -6.83 -0.03 4.21 16 22 C 0.25 5.42 12.51 -20.76 -0.26 5.16 16 23 N -0.48 -11.17 18.27 42.15 0.77 -10.40 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.22 6.76 -51.93 -0.35 0.87 16 27 H 0.12 2.47 5.11 -51.93 -0.27 2.20 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.34 5.15 8.90 -39.29 -0.35 4.80 16 32 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 1.47 6.28 -51.93 -0.33 1.14 16 34 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 35 H 0.08 1.25 6.01 -51.93 -0.31 0.94 16 36 H 0.14 2.93 5.90 -51.93 -0.31 2.62 16 LS Contribution 284.87 15.07 4.29 4.29 Total: -1.00 -29.48 284.87 -5.92 -35.39 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -4.69 Total: 7.08 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -0.84 Total: 7.35 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.28 Total: -55.35 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.07 Total: -13.52 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.74 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.48 -5.92 -35.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694284103.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.534 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds