Wall clock time and date at job start Mon Mar 30 2020 04:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.57426 * 2 1 4 4 C 1.53118 * 109.52174 * 239.84383 * 2 1 3 5 5 C 1.53034 * 109.28039 * 182.44089 * 4 2 1 6 6 N 1.46845 * 109.52348 * 59.17707 * 5 4 2 7 7 C 1.46931 * 111.22324 * 298.25772 * 6 5 4 8 8 C 1.53038 * 109.47668 * 61.71486 * 7 6 5 9 9 H 1.08993 * 109.50636 * 180.88293 * 8 7 6 10 10 C 1.50704 * 109.50331 * 60.80022 * 8 7 6 11 11 O 1.21289 * 120.00516 * 278.09665 * 10 8 7 12 12 N 1.34778 * 119.99426 * 98.09721 * 10 8 7 13 13 C 1.37103 * 119.99703 * 176.16749 * 12 10 8 14 14 H 1.08002 * 120.00489 * 348.25755 * 13 12 10 15 15 C 1.38947 * 120.00075 * 168.25263 * 13 12 10 16 16 N 1.31408 * 119.99969 * 337.13094 * 15 13 12 17 17 Si 1.86803 * 119.99946 * 157.12555 * 15 13 12 18 18 H 1.48495 * 109.47320 * 265.02471 * 17 15 13 19 19 H 1.48499 * 109.47046 * 145.02689 * 17 15 13 20 20 H 1.48497 * 109.47219 * 25.02779 * 17 15 13 21 21 C 1.46498 * 120.00463 * 356.16233 * 12 10 8 22 22 C 1.47198 * 109.47553 * 277.92505 * 21 12 10 23 23 N 5.52170 * 114.19083 * 116.87552 * 2 1 3 24 24 H 1.09001 * 109.47313 * 299.84104 * 1 2 3 25 25 H 1.09003 * 109.47151 * 59.83773 * 1 2 3 26 26 H 1.09004 * 109.47294 * 179.84153 * 1 2 3 27 27 H 1.08996 * 109.50571 * 302.37934 * 4 2 1 28 28 H 1.09006 * 109.50575 * 62.46010 * 4 2 1 29 29 H 1.09001 * 109.46969 * 179.19471 * 5 4 2 30 30 H 1.09005 * 109.46475 * 299.16355 * 5 4 2 31 31 H 1.00900 * 111.00025 * 174.16230 * 6 5 4 32 32 H 1.08994 * 109.44902 * 301.73512 * 7 6 5 33 33 H 1.08999 * 109.51700 * 181.73557 * 7 6 5 34 34 H 0.97006 * 120.00360 * 179.97438 * 16 15 13 35 35 H 1.09004 * 109.46961 * 37.92234 * 21 12 10 36 36 H 1.08998 * 109.47147 * 157.91901 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7250 -1.2478 5 6 3.5707 -0.7752 -1.2117 6 7 4.0102 -1.4789 -0.0001 7 6 3.5709 -0.7752 1.2126 8 6 2.0417 -0.7251 1.2478 9 1 1.7156 -0.1895 2.1393 10 6 1.4928 -2.1283 1.2748 11 8 1.3853 -2.7575 0.2435 12 7 1.1213 -2.6840 2.4451 13 6 0.5491 -3.9299 2.4613 14 1 0.2223 -4.3861 1.5386 15 6 0.3899 -4.6057 3.6649 16 7 1.1495 -4.3033 4.6937 17 14 -0.9041 -5.9439 3.8205 18 1 -2.1486 -5.3655 4.3878 19 1 -0.4026 -7.0155 4.7180 20 1 -1.1898 -6.5146 2.4797 21 6 1.3288 -1.9570 3.6999 22 6 2.7195 -2.1375 4.1475 23 7 3.7926 -2.2769 4.4928 24 1 -0.3634 0.5114 0.8914 25 1 -0.3633 0.5164 -0.8885 26 1 -0.3634 -1.0277 -0.0028 27 1 1.6447 -1.7399 -1.2675 28 1 1.7155 -0.1893 -2.1394 29 1 3.9378 -1.3033 -2.0918 30 1 3.9674 0.2401 -1.2060 31 1 5.0108 -1.6086 -0.0002 32 1 3.9675 0.2400 1.2069 33 1 3.9373 -1.3033 2.0929 34 1 1.0381 -4.7749 5.5341 35 1 1.1328 -0.8964 3.5421 36 1 0.6495 -2.3428 4.4600 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694284103.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:40 Heat of formation + Delta-G solvation = -9.831224 kcal Electronic energy + Delta-G solvation = -19692.085793 eV Core-core repulsion = 16790.097648 eV Total energy + Delta-G solvation = -2901.988145 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.35689 -38.71226 -37.32774 -36.04975 -34.32515 -33.73067 -31.80286 -29.19627 -28.31078 -26.72249 -24.28768 -22.94392 -21.95013 -19.97456 -19.46786 -18.14641 -17.86852 -17.16162 -16.34284 -16.02161 -15.72005 -15.23527 -14.91008 -14.68624 -14.62498 -14.29283 -13.92429 -13.82007 -13.42298 -13.27288 -13.15377 -13.04751 -12.87238 -12.58280 -12.26757 -12.20100 -12.08015 -12.01029 -11.68217 -11.23263 -11.04725 -10.94820 -9.85680 -9.76863 -9.15403 -8.30720 -5.81610 1.43164 1.49987 1.60069 1.89642 2.14106 2.30937 2.39260 3.06593 3.15955 3.41570 3.58067 3.80055 3.97390 4.03827 4.25413 4.34716 4.46481 4.54735 4.64108 4.66825 4.81040 4.85844 4.88326 4.99495 5.05302 5.11862 5.25748 5.34875 5.50695 5.56347 5.84893 6.15822 6.20684 6.54613 6.57820 6.97917 7.28453 7.52839 8.17072 8.72219 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.025024 B = 0.008513 C = 0.007383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.656719 B = 3288.396480 C = 3791.648975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.068 4.068 3 H 0.093 0.907 4 C -0.137 4.137 5 C 0.071 3.929 6 N -0.704 5.704 7 C 0.075 3.925 8 C -0.102 4.102 9 H 0.104 0.896 10 C 0.481 3.519 11 O -0.582 6.582 12 N -0.468 5.468 13 C -0.329 4.329 14 H 0.080 0.920 15 C 0.000 4.000 16 N -0.898 5.898 17 Si 0.980 3.020 18 H -0.261 1.261 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.212 3.788 22 C 0.256 3.744 23 N -0.506 5.506 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.030 0.970 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.343 0.657 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.272 0.728 35 H 0.130 0.870 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.411 11.914 -4.728 12.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 H 0.111 0.889 4 C -0.174 4.174 5 C -0.058 4.058 6 N -0.336 5.336 7 C -0.055 4.055 8 C -0.124 4.124 9 H 0.122 0.878 10 C 0.271 3.729 11 O -0.465 6.465 12 N -0.189 5.189 13 C -0.456 4.456 14 H 0.098 0.902 15 C -0.200 4.200 16 N -0.538 5.538 17 Si 0.806 3.194 18 H -0.186 1.186 19 H -0.215 1.215 20 H -0.204 1.204 21 C 0.085 3.915 22 C -0.062 4.062 23 N -0.186 5.186 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.049 0.951 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.161 0.839 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.147 0.853 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.414 10.881 -4.560 11.805 hybrid contribution -0.057 -0.586 0.303 0.662 sum -0.471 10.295 -4.256 11.150 Atomic orbital electron populations 1.21807 0.94698 1.01058 1.02576 1.20989 0.96158 0.98522 0.92974 0.88882 1.22042 0.95061 1.03316 0.96993 1.21838 0.96235 0.95954 0.91771 1.60052 1.18391 1.52909 1.02238 1.21733 0.93755 0.97199 0.92772 1.21532 0.95864 0.93537 1.01451 0.87791 1.20517 0.79735 0.89486 0.83134 1.90359 1.57681 1.65307 1.33116 1.43908 1.54681 1.16124 1.04203 1.19586 1.36147 0.95148 0.94754 0.90226 1.25746 0.98768 1.00361 0.95163 1.70034 1.35751 1.43969 1.04079 0.85102 0.79048 0.77671 0.77605 1.18597 1.21519 1.20449 1.19247 0.85184 0.97874 0.89158 1.29978 0.95042 0.89859 0.91282 1.80896 1.14858 1.11910 1.10981 0.91380 0.91197 0.95090 0.90219 0.91043 0.91183 0.94078 0.83856 0.92238 0.93239 0.91844 0.85289 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 8.91 71.98 0.64 -3.27 16 2 C -0.07 -1.88 2.54 -10.72 -0.03 -1.91 16 3 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 4 C -0.14 -4.18 4.98 30.64 0.15 -4.03 16 5 C 0.07 1.99 6.55 86.32 0.57 2.55 16 6 N -0.70 -23.59 6.21 -513.81 -3.19 -26.78 16 7 C 0.08 2.44 5.98 86.31 0.52 2.95 16 8 C -0.10 -3.35 2.01 -11.49 -0.02 -3.37 16 9 H 0.10 2.86 5.73 -2.39 -0.01 2.85 16 10 C 0.48 21.18 5.11 87.66 0.45 21.63 16 11 O -0.58 -29.79 12.20 -3.06 -0.04 -29.83 16 12 N -0.47 -21.75 2.61 -645.41 -1.69 -23.44 16 13 C -0.33 -17.31 9.40 84.04 0.79 -16.52 16 14 H 0.08 4.57 7.35 -2.91 -0.02 4.55 16 15 C 0.00 0.01 4.91 84.93 0.42 0.43 16 16 N -0.90 -45.21 9.52 21.66 0.21 -45.01 16 17 Si 0.98 40.87 29.61 68.60 2.03 42.90 16 18 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 19 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 21 C 0.21 8.29 4.89 84.57 0.41 8.71 16 22 C 0.26 11.09 12.51 89.44 1.12 12.21 16 23 N -0.51 -23.53 18.27 20.00 0.37 -23.17 16 24 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.03 1.07 6.76 -2.39 -0.02 1.05 16 27 H 0.08 3.23 5.11 -2.39 -0.01 3.22 16 28 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.34 10.19 8.90 -89.69 -0.80 9.39 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.05 1.86 6.28 -2.39 -0.01 1.84 16 34 H 0.27 13.16 8.31 -92.70 -0.77 12.39 16 35 H 0.13 3.68 6.01 -2.39 -0.01 3.66 16 36 H 0.13 5.42 5.90 -2.39 -0.01 5.41 16 Total: -1.00 -65.45 284.87 3.01 -62.44 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.31 Total: 23.51 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 5.01 Total: 19.37 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -4.30 Total: -118.39 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.04 Total: -29.83 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -65.45 3.01 -62.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694284103.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.606 kcal (2) G-P(sol) polarization free energy of solvation -65.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds