Wall clock time and date at job start Mon Mar 30 2020 04:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47132 * 2 1 4 4 C 1.35315 * 125.86926 * 125.00110 * 3 2 1 5 5 C 1.35348 * 106.17485 * 179.97438 * 4 3 2 6 6 C 1.50704 * 126.75222 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47941 * 245.02299 * 6 5 4 8 8 C 1.53090 * 109.48121 * 125.00016 * 6 5 4 9 9 C 1.53168 * 109.16383 * 182.40938 * 8 6 5 10 10 C 1.53177 * 109.03858 * 56.98247 * 9 8 6 11 11 C 1.53096 * 109.16164 * 303.01870 * 10 9 8 12 12 H 1.09001 * 109.48095 * 297.62604 * 11 10 9 13 13 C 1.50692 * 109.48076 * 177.58950 * 11 10 9 14 14 H 1.08001 * 120.00703 * 0.02562 * 13 11 10 15 15 C 1.37887 * 120.00024 * 179.97438 * 13 11 10 16 16 N 1.31514 * 119.99791 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00160 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46835 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47212 * 120.00231 * 17 15 13 20 20 H 1.48503 * 109.46906 * 240.00170 * 17 15 13 21 21 O 1.42897 * 109.47761 * 5.05863 * 6 5 4 22 22 N 1.33772 * 106.49789 * 0.25939 * 5 4 3 23 23 N 1.28635 * 108.88313 * 359.56727 * 22 5 4 24 24 H 1.09001 * 109.47122 * 300.00306 * 1 2 3 25 25 H 1.09002 * 109.47133 * 60.00151 * 1 2 3 26 26 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47393 * 239.99272 * 2 1 3 28 28 H 1.09007 * 109.46666 * 119.99874 * 2 1 3 29 29 H 1.08001 * 126.91021 * 359.94232 * 4 3 2 30 30 H 1.09002 * 109.52149 * 62.49982 * 8 6 5 31 31 H 1.09006 * 109.57554 * 302.34680 * 8 6 5 32 32 H 1.09002 * 109.54603 * 297.11404 * 9 8 6 33 33 H 1.09004 * 109.54812 * 176.84726 * 9 8 6 34 34 H 1.09003 * 109.52410 * 183.11691 * 10 9 8 35 35 H 1.08994 * 109.57348 * 62.95306 * 10 9 8 36 36 H 0.96998 * 120.00167 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8756 1.9190 0.8982 5 6 3.0541 3.2075 0.5242 6 6 3.9230 4.2324 1.2067 7 1 3.2975 5.0295 1.6087 8 6 4.9106 4.8196 0.1950 9 6 5.8293 5.8157 0.9091 10 6 6.5368 5.1025 2.0654 11 6 5.4864 4.5044 3.0050 12 1 4.8815 5.3050 3.4307 13 6 6.1746 3.7505 4.1134 14 1 7.2531 3.7026 4.1455 15 6 5.4275 3.1225 5.0875 16 7 4.1142 3.1811 5.0488 17 14 6.2806 2.1885 6.4619 18 1 7.7519 2.2726 6.2785 19 1 5.9094 2.7847 7.7703 20 1 5.8588 0.7650 6.4291 21 8 4.6463 3.6111 2.2710 22 7 2.3027 3.3941 -0.5667 23 7 1.7060 2.2915 -0.8547 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5140 -0.8899 28 1 1.8932 -0.5139 0.8901 29 1 3.3262 1.4206 1.7437 30 1 4.3614 5.3321 -0.5948 31 1 5.5091 4.0182 -0.2385 32 1 5.2368 6.6433 1.2991 33 1 6.5711 6.1958 0.2067 34 1 7.1506 5.8174 2.6134 35 1 7.1686 4.3064 1.6716 36 1 3.5886 2.7390 5.7337 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714424483.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:54 Heat of formation + Delta-G solvation = 19.687985 kcal Electronic energy + Delta-G solvation = -18822.206490 eV Core-core repulsion = 15921.498394 eV Total energy + Delta-G solvation = -2900.708096 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.22132 -39.87017 -36.44426 -34.93757 -34.17945 -33.04041 -31.75468 -30.64290 -27.64350 -25.58976 -25.45737 -23.70893 -22.69835 -21.50843 -20.88773 -18.75857 -18.13315 -17.40405 -16.77606 -16.58611 -16.04129 -15.78980 -15.49136 -15.13523 -14.96211 -14.49333 -14.12855 -13.72253 -13.24711 -13.14538 -12.99687 -12.85011 -12.63971 -12.53139 -12.37131 -12.10473 -11.88403 -11.80635 -11.74944 -11.40519 -10.98955 -10.83987 -10.53782 -10.20863 -9.64647 -8.10760 -6.30972 0.63906 1.43549 1.45662 1.48182 1.49094 1.57572 2.43825 2.84265 3.29370 3.57377 3.91598 3.94522 3.97151 4.11452 4.13740 4.25694 4.37444 4.43755 4.48474 4.57784 4.68476 4.72859 4.86262 4.93839 4.99565 5.09275 5.14507 5.19651 5.23716 5.26917 5.32545 5.60800 5.73509 5.81976 6.24718 6.70925 7.16031 7.44184 7.48758 8.96648 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.018817 B = 0.007445 C = 0.005585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.661751 B = 3759.818650 C = 5012.012564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.285 5.285 4 C -0.019 4.019 5 C -0.025 4.025 6 C 0.170 3.830 7 H 0.040 0.960 8 C -0.125 4.125 9 C -0.114 4.114 10 C -0.137 4.137 11 C 0.217 3.783 12 H -0.017 1.017 13 C -0.546 4.546 14 H 0.066 0.934 15 C 0.029 3.971 16 N -0.893 5.893 17 Si 0.959 3.041 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.278 1.278 21 O -0.373 6.373 22 N -0.290 5.290 23 N -0.103 5.103 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.115 0.885 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.196 0.804 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.254 -6.127 -8.189 10.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.020 4.020 3 N -0.080 5.080 4 C -0.170 4.170 5 C -0.163 4.163 6 C 0.109 3.891 7 H 0.057 0.943 8 C -0.163 4.163 9 C -0.151 4.151 10 C -0.175 4.175 11 C 0.162 3.838 12 H 0.000 1.000 13 C -0.583 4.583 14 H 0.084 0.916 15 C -0.173 4.173 16 N -0.530 5.530 17 Si 0.783 3.217 18 H -0.189 1.189 19 H -0.205 1.205 20 H -0.204 1.204 21 O -0.292 6.292 22 N -0.158 5.158 23 N -0.083 5.083 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.134 0.866 27 H 0.139 0.861 28 H 0.144 0.856 29 H 0.212 0.788 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.269 -6.090 -9.331 11.932 hybrid contribution 0.723 -0.437 1.835 2.020 sum -3.546 -6.527 -7.495 10.553 Atomic orbital electron populations 1.22063 0.91931 1.05215 1.02605 1.22605 0.97566 0.74406 1.07383 1.47759 1.29673 1.13007 1.17586 1.23511 0.98716 0.95681 0.99056 1.21786 1.02410 0.95502 0.96581 1.19714 0.90924 0.90215 0.88217 0.94272 1.21969 0.97558 0.99080 0.97700 1.21610 0.98715 0.97374 0.97449 1.22125 0.98824 0.99525 0.96983 1.19628 0.86858 0.88924 0.88404 0.99959 1.21424 0.93108 1.36193 1.07583 0.91596 1.25869 0.95353 0.96334 0.99785 1.70186 1.05843 1.42583 1.34397 0.85521 0.79135 0.78295 0.78713 1.18875 1.20515 1.20416 1.88166 1.59994 1.37105 1.43904 1.74867 1.09726 1.17042 1.14202 1.78004 1.21413 0.93084 1.15763 0.93273 0.91931 0.86640 0.86141 0.85569 0.78752 0.90399 0.92256 0.92194 0.89604 0.91515 0.92683 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 10.04 71.98 0.72 -1.86 16 2 C 0.10 1.82 7.17 86.38 0.62 2.44 16 3 N -0.28 -8.79 3.44 -347.73 -1.20 -9.99 16 4 C -0.02 -0.69 10.92 83.49 0.91 0.22 16 5 C -0.03 -1.04 6.47 41.60 0.27 -0.77 16 6 C 0.17 7.46 3.20 29.88 0.10 7.56 16 7 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 8 C -0.12 -4.64 5.40 30.68 0.17 -4.47 16 9 C -0.11 -3.97 6.03 30.71 0.19 -3.78 16 10 C -0.14 -5.66 5.36 30.69 0.16 -5.50 16 11 C 0.22 11.18 2.50 29.88 0.07 11.25 16 12 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 13 C -0.55 -30.02 8.79 25.60 0.23 -29.80 16 14 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 15 C 0.03 1.61 5.40 84.66 0.46 2.07 16 16 N -0.89 -51.43 12.84 21.45 0.28 -51.16 16 17 Si 0.96 42.36 29.54 68.60 2.03 44.38 16 18 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 21 O -0.37 -18.96 8.83 -148.98 -1.32 -20.28 16 22 N -0.29 -11.78 12.40 -48.60 -0.60 -12.38 16 23 N -0.10 -3.72 12.91 37.02 0.48 -3.24 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 1.16 8.12 -2.39 -0.02 1.14 16 26 H 0.12 1.05 8.14 -2.39 -0.02 1.04 16 27 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.13 1.82 8.07 -2.38 -0.02 1.80 16 29 H 0.20 7.30 7.94 -2.91 -0.02 7.28 16 30 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -67.49 302.31 4.61 -62.88 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 1.05 Total: 12.42 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 3.89 Total: -22.65 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -1.05 Total: -76.76 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -1.32 Total: -20.28 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -67.49 4.61 -62.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714424483.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.569 kcal (2) G-P(sol) polarization free energy of solvation -67.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds