Wall clock time and date at job start Mon Mar 30 2020 04:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47276 * 2 1 4 4 C 1.35312 * 125.86709 * 124.71314 * 3 2 1 5 5 C 1.35352 * 106.17240 * 179.90780 * 4 3 2 6 6 C 1.50700 * 126.75197 * 180.12571 * 5 4 3 7 7 C 1.53002 * 109.86811 * 64.80265 * 6 5 4 8 8 C 1.54097 * 109.87937 * 185.95920 * 6 5 4 9 9 C 1.54818 * 104.18899 * 121.45383 * 8 6 5 10 10 C 1.54996 * 102.08816 * 20.88277 * 9 8 6 11 11 H 1.08997 * 110.62153 * 81.47723 * 10 9 8 12 12 C 1.50698 * 110.61657 * 204.47839 * 10 9 8 13 13 H 1.07998 * 120.00026 * 355.51684 * 12 10 9 14 14 C 1.37878 * 120.00061 * 175.52561 * 12 10 9 15 15 N 1.31513 * 120.00019 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 120.00107 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47256 * 59.99835 * 16 14 12 18 18 H 1.48496 * 109.47337 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47123 * 299.99979 * 16 14 12 20 20 O 1.43742 * 109.87886 * 303.79221 * 6 5 4 21 21 N 1.33775 * 106.49643 * 0.35153 * 5 4 3 22 22 N 1.28629 * 108.88590 * 359.77853 * 21 5 4 23 23 H 1.09002 * 109.47144 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46968 * 299.99913 * 1 2 3 25 25 H 1.08998 * 109.47310 * 60.00201 * 1 2 3 26 26 H 1.08997 * 109.47344 * 239.99773 * 2 1 3 27 27 H 1.08998 * 109.47310 * 119.99799 * 2 1 3 28 28 H 1.07995 * 126.91362 * 0.02562 * 4 3 2 29 29 H 1.08996 * 109.47415 * 60.69885 * 7 6 5 30 30 H 1.08996 * 109.47134 * 180.70405 * 7 6 5 31 31 H 1.09003 * 109.46976 * 300.69595 * 7 6 5 32 32 H 1.09000 * 110.49308 * 240.13102 * 8 6 5 33 33 H 1.09006 * 110.49037 * 2.78109 * 8 6 5 34 34 H 1.08994 * 110.90590 * 262.68479 * 9 8 6 35 35 H 1.08999 * 110.90470 * 139.07399 * 9 8 6 36 36 H 0.97008 * 120.00185 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8714 1.9205 0.9014 5 6 3.0529 3.2080 0.5252 6 6 3.9215 4.2330 1.2079 7 6 5.3897 3.8115 1.1205 8 6 3.7280 5.6099 0.5436 9 6 3.2455 6.5232 1.6968 10 6 3.7289 5.7478 2.9488 11 1 4.7830 5.9477 3.1409 12 6 2.8920 6.1051 4.1501 13 1 2.1328 6.8691 4.0713 14 6 3.0957 5.4567 5.3497 15 7 4.0200 4.5261 5.4456 16 14 2.0589 5.9001 6.8389 17 1 0.6263 5.6526 6.5361 18 1 2.4712 5.0651 7.9955 19 1 2.2543 7.3347 7.1688 20 8 3.5317 4.3645 2.5852 21 7 2.3057 3.3931 -0.5689 22 7 1.7053 2.2919 -0.8541 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.3189 1.4232 1.7491 29 1 5.6865 3.7432 0.0740 30 1 6.0106 4.5505 1.6269 31 1 5.5180 2.8404 1.5987 32 1 4.6719 5.9739 0.1380 33 1 2.9719 5.5528 -0.2396 34 1 2.1595 6.6154 1.6916 35 1 3.7182 7.5037 1.6401 36 1 4.1636 4.0702 6.2897 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714988424.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:42 Heat of formation + Delta-G solvation = 49.607419 kcal Electronic energy + Delta-G solvation = -18934.985336 eV Core-core repulsion = 16035.574644 eV Total energy + Delta-G solvation = -2899.410692 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.87651 -38.41660 -35.28318 -32.99474 -31.52787 -30.96294 -30.47296 -29.03111 -26.60069 -24.56957 -23.87087 -22.04097 -21.28591 -19.97664 -19.12269 -17.12949 -16.48943 -16.17328 -15.16444 -14.85466 -14.46478 -14.29848 -14.00940 -13.62848 -12.95887 -12.69878 -12.48691 -12.37431 -12.00137 -11.75838 -11.61024 -11.43370 -11.13971 -10.88504 -10.68189 -10.55037 -10.37583 -10.07513 -9.93497 -9.74082 -9.59394 -9.09284 -8.72644 -8.55491 -8.03568 -6.00504 -4.11831 1.96204 2.58427 2.98083 3.33160 3.36739 3.40291 4.38865 4.43184 4.63229 4.69842 4.92412 5.12963 5.25744 5.36264 5.44773 5.50179 5.66482 5.74652 5.81556 5.89818 6.04332 6.11022 6.24620 6.28455 6.37413 6.61409 6.67894 6.80315 6.82193 6.91814 6.95168 7.06911 7.56955 7.90751 8.26632 8.59355 8.90627 8.99842 9.57795 11.07175 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.021717 B = 0.006841 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.979038 B = 4092.229590 C = 4755.856982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.115 3.885 3 N -0.300 5.300 4 C -0.030 4.030 5 C 0.007 3.993 6 C 0.174 3.826 7 C -0.148 4.148 8 C -0.144 4.144 9 C -0.147 4.147 10 C 0.211 3.789 11 H 0.028 0.972 12 C -0.528 4.528 13 H 0.064 0.936 14 C 0.078 3.922 15 N -0.864 5.864 16 Si 0.891 3.109 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.275 1.275 20 O -0.339 6.339 21 N -0.263 5.263 22 N -0.099 5.099 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.189 0.811 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.255 -8.976 -8.948 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.006 4.006 3 N -0.095 5.095 4 C -0.180 4.180 5 C -0.130 4.130 6 C 0.130 3.870 7 C -0.206 4.206 8 C -0.182 4.182 9 C -0.185 4.185 10 C 0.156 3.844 11 H 0.046 0.954 12 C -0.565 4.565 13 H 0.082 0.918 14 C -0.128 4.128 15 N -0.500 5.500 16 Si 0.718 3.282 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.200 1.200 20 O -0.258 6.258 21 N -0.131 5.131 22 N -0.078 5.078 23 H 0.098 0.902 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.113 0.887 27 H 0.122 0.878 28 H 0.206 0.794 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.073 -8.982 -9.951 13.564 hybrid contribution 0.073 -0.235 1.751 1.768 sum -2.000 -9.218 -8.200 12.498 Atomic orbital electron populations 1.22073 0.92971 1.03308 1.04170 1.21991 0.96783 0.77062 1.04808 1.47353 1.31234 1.11664 1.19215 1.23406 0.99827 0.96111 0.98631 1.21979 1.01530 0.94098 0.95432 1.19943 0.90032 0.90763 0.86214 1.22155 0.95779 1.02199 1.00439 1.22939 1.01451 0.94559 0.99240 1.23200 1.01024 0.98207 0.96064 1.20680 0.95760 0.77155 0.90808 0.95417 1.20986 1.21045 1.21355 0.93144 0.91821 1.25059 0.94717 0.94331 0.98696 1.70028 1.31217 1.23213 1.25550 0.86694 0.80926 0.78496 0.82065 1.20180 1.21207 1.20032 1.89297 1.85849 1.31440 1.19235 1.74930 1.08293 1.15485 1.14382 1.78135 1.21141 0.93092 1.15472 0.90215 0.91543 0.90802 0.88741 0.87844 0.79378 0.93134 0.91574 0.92438 0.91899 0.90200 0.91837 0.92235 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.04 37.15 0.37 -1.12 16 2 C 0.11 1.09 7.18 -4.04 -0.03 1.06 16 3 N -0.30 -4.55 3.44 -61.26 -0.21 -4.77 16 4 C -0.03 -0.51 11.40 -17.05 -0.19 -0.71 16 5 C 0.01 0.15 5.87 -82.77 -0.49 -0.34 16 6 C 0.17 3.66 1.09 -91.20 -0.10 3.56 16 7 C -0.15 -2.70 8.55 37.16 0.32 -2.38 16 8 C -0.14 -2.89 6.25 -25.20 -0.16 -3.04 16 9 C -0.15 -3.26 6.55 -24.72 -0.16 -3.42 16 10 C 0.21 5.51 3.11 -26.83 -0.08 5.43 16 11 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 12 C -0.53 -14.99 8.83 -34.44 -0.30 -15.29 16 13 H 0.06 1.77 7.78 -52.49 -0.41 1.36 16 14 C 0.08 2.20 5.42 -17.82 -0.10 2.10 16 15 N -0.86 -25.25 12.94 55.43 0.72 -24.53 16 16 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 O -0.34 -8.80 10.07 -35.23 -0.35 -9.16 16 21 N -0.26 -5.34 11.02 33.29 0.37 -4.98 16 22 N -0.10 -1.80 12.91 60.35 0.78 -1.02 16 23 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 26 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.10 0.75 8.07 -51.93 -0.42 0.33 16 28 H 0.19 2.86 8.06 -52.49 -0.42 2.44 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 31 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 32 H 0.06 1.12 7.70 -51.93 -0.40 0.72 16 33 H 0.08 1.60 6.67 -51.93 -0.35 1.26 16 34 H 0.06 1.45 8.05 -51.93 -0.42 1.03 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 303.39 15.07 4.57 4.57 Total: -1.00 -33.05 303.39 -5.42 -38.47 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.35 Total: -0.84 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -0.92 Total: -14.16 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 1.65 Total: -35.30 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.35 Total: -9.16 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.05 -5.42 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714988424.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.080 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds