Wall clock time and date at job start Mon Mar 30 2020 03:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48534 * 110.99897 * 2 1 4 4 C 1.54935 * 103.22796 * 159.72059 * 3 2 1 5 5 C 1.54600 * 102.92137 * 322.58518 * 4 3 2 6 6 C 1.47900 * 110.99828 * 117.39591 * 2 1 3 7 7 H 1.09005 * 110.08421 * 333.59863 * 6 2 1 8 8 C 1.52999 * 109.92110 * 94.80689 * 6 2 1 9 9 O 1.42905 * 109.46728 * 292.59046 * 8 6 2 10 10 C 1.36178 * 116.99976 * 179.97438 * 9 8 6 11 11 C 1.40509 * 126.05320 * 0.02562 * 10 9 8 12 12 N 1.30946 * 108.41252 * 179.97438 * 11 10 9 13 13 N 1.40083 * 108.35555 * 359.97438 * 12 11 10 14 14 C 1.37336 * 126.09446 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00293 * 179.97438 * 14 13 12 16 16 C 1.38988 * 119.99908 * 359.97438 * 14 13 12 17 17 N 1.31304 * 119.99990 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00142 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47130 * 89.99401 * 18 16 14 20 20 H 1.48500 * 109.47423 * 209.99579 * 18 16 14 21 21 H 1.48496 * 109.46841 * 329.99640 * 18 16 14 22 22 C 1.35501 * 126.05420 * 179.71373 * 10 9 8 23 23 H 1.08997 * 109.47463 * 302.60428 * 1 2 3 24 24 H 1.09005 * 109.47176 * 62.60657 * 1 2 3 25 25 H 1.09002 * 109.47251 * 182.59996 * 1 2 3 26 26 H 1.09002 * 110.66540 * 41.28383 * 3 2 1 27 27 H 1.09001 * 110.80856 * 278.21756 * 3 2 1 28 28 H 1.08996 * 110.72368 * 204.22796 * 4 3 2 29 29 H 1.08997 * 110.88182 * 81.01348 * 4 3 2 30 30 H 1.09000 * 110.30928 * 263.04082 * 5 4 3 31 31 H 1.09001 * 110.39323 * 140.91374 * 5 4 3 32 32 H 1.09000 * 109.47486 * 172.58985 * 8 6 2 33 33 H 1.09001 * 109.47362 * 52.58262 * 8 6 2 34 34 H 1.08002 * 125.79044 * 359.97261 * 11 10 9 35 35 H 0.97002 * 119.99755 * 180.02562 * 17 16 14 36 36 H 1.08002 * 126.23354 * 0.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2107 0.5228 5 6 3.2982 0.1054 1.5931 6 6 1.9990 -0.6353 1.2259 7 1 1.2770 -0.5432 2.0374 8 6 2.2983 -2.1120 0.9601 9 8 1.0736 -2.8132 0.7349 10 6 1.1632 -4.1481 0.4810 11 6 2.3482 -4.9006 0.4203 12 7 2.0353 -6.1443 0.1554 13 7 0.6422 -6.2332 0.0378 14 6 -0.0757 -7.3717 -0.2352 15 1 -1.1525 -7.3277 -0.3037 16 6 0.5838 -8.5807 -0.4232 17 7 1.8931 -8.6342 -0.3403 18 14 -0.3926 -10.1295 -0.7938 19 1 -0.5538 -10.2733 -2.2630 20 1 0.3300 -11.3106 -0.2571 21 1 -1.7303 -10.0357 -0.1559 22 6 0.1249 -4.9870 0.2479 23 1 -0.3634 0.5537 0.8657 24 1 -0.3634 0.4728 -0.9125 25 1 -0.3634 -1.0266 0.0466 26 1 1.4236 2.0205 0.6729 27 1 2.0040 1.8004 -1.0084 28 1 3.8122 2.1352 0.9716 29 1 4.1140 0.8848 -0.2771 30 1 3.2136 0.5486 2.5853 31 1 4.1467 -0.5779 1.5557 32 1 2.8088 -2.5403 1.8227 33 1 2.9350 -2.2010 0.0799 34 1 3.3475 -4.5182 0.5671 35 1 2.3533 -9.4779 -0.4719 36 1 -0.9210 -4.7185 0.2296 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260813402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:29 Heat of formation + Delta-G solvation = 49.901505 kcal Electronic energy + Delta-G solvation = -18241.090821 eV Core-core repulsion = 15341.692882 eV Total energy + Delta-G solvation = -2899.397939 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.62219 -39.02743 -36.62056 -33.31633 -32.15723 -30.52646 -30.16443 -27.67472 -25.72339 -24.79970 -24.25034 -21.21973 -20.78713 -19.75780 -19.48562 -17.75837 -16.11669 -15.63311 -15.54999 -15.22657 -15.04050 -13.89361 -13.85769 -13.65425 -13.44926 -12.97471 -12.84938 -12.58652 -12.21567 -11.69619 -11.47604 -11.43676 -11.25309 -11.15645 -11.07459 -10.85559 -10.73933 -10.50557 -10.43891 -10.16924 -9.21493 -8.70417 -8.35294 -8.06058 -6.64380 -6.50053 -4.16845 3.00899 3.09332 3.14018 3.65854 3.82554 4.01865 4.13645 4.30311 4.63250 4.70346 4.89780 4.92611 5.07499 5.23812 5.42281 5.49709 5.52003 5.61248 5.69144 5.73126 5.78397 5.88381 6.00032 6.05716 6.17927 6.24819 6.28662 6.68957 6.87743 6.97282 7.07675 7.13537 7.37460 7.65249 8.03851 8.59597 8.85806 9.44490 9.68705 10.46827 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.055628 B = 0.004184 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.224820 B = 6691.309994 C = 7025.096737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.510 5.510 3 C 0.031 3.969 4 C -0.123 4.123 5 C -0.125 4.125 6 C 0.069 3.931 7 H 0.059 0.941 8 C 0.090 3.910 9 O -0.311 6.311 10 C -0.065 4.065 11 C -0.108 4.108 12 N -0.246 5.246 13 N -0.144 5.144 14 C -0.321 4.321 15 H 0.116 0.884 16 C 0.046 3.954 17 N -0.777 5.777 18 Si 0.934 3.066 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.264 1.264 22 C -0.079 4.079 23 H 0.021 0.979 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.149 0.851 35 H 0.273 0.727 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.434 14.679 2.256 14.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.234 5.234 3 C -0.097 4.097 4 C -0.161 4.161 5 C -0.163 4.163 6 C -0.040 4.040 7 H 0.077 0.923 8 C 0.013 3.987 9 O -0.225 6.225 10 C -0.121 4.121 11 C -0.281 4.281 12 N -0.081 5.081 13 N 0.084 4.916 14 C -0.453 4.453 15 H 0.134 0.866 16 C -0.171 4.171 17 N -0.404 5.404 18 Si 0.758 3.242 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.188 1.188 22 C -0.225 4.225 23 H 0.039 0.961 24 H 0.081 0.919 25 H 0.105 0.895 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.166 0.834 35 H 0.084 0.916 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.039 13.212 1.597 13.349 hybrid contribution -0.779 0.562 0.708 1.193 sum 0.260 13.774 2.305 13.968 Atomic orbital electron populations 1.22531 0.87224 1.03481 0.99704 1.64611 1.08796 1.13589 1.36453 1.23260 0.94975 0.90521 1.00899 1.22470 0.96812 0.98244 0.98553 1.22366 0.97357 0.97722 0.98870 1.22404 0.96266 0.93670 0.91663 0.92301 1.22414 0.87081 0.89351 0.99839 1.85745 1.29986 1.17803 1.88955 1.18204 0.93492 0.83162 1.17222 1.23554 0.97142 0.93351 1.14092 1.78108 0.90275 1.15686 1.24021 1.44465 1.03847 1.04513 1.38780 1.19863 0.91553 0.83687 1.50193 0.86597 1.25610 0.95845 0.99776 0.95830 1.70217 1.07158 1.26798 1.36240 0.85831 0.79508 0.79725 0.79103 1.19629 1.20166 1.18818 1.20903 0.97146 0.85745 1.18751 0.96075 0.91854 0.89526 0.94084 0.90181 0.91196 0.90581 0.91170 0.90449 0.93349 0.92599 0.83382 0.91636 0.83399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.31 60.06 0.56 0.82 16 2 N -0.51 -7.16 5.17 -230.78 -1.19 -8.35 16 3 C 0.03 0.34 6.56 -1.90 -0.01 0.33 16 4 C -0.12 -1.18 7.06 -24.87 -0.18 -1.36 16 5 C -0.12 -1.34 6.57 -25.37 -0.17 -1.50 16 6 C 0.07 0.95 2.79 -66.64 -0.19 0.77 16 7 H 0.06 0.83 7.74 -51.93 -0.40 0.43 16 8 C 0.09 1.54 4.49 37.16 0.17 1.71 16 9 O -0.31 -6.61 8.84 -20.31 -0.18 -6.79 16 10 C -0.07 -1.60 6.97 -39.70 -0.28 -1.88 16 11 C -0.11 -2.78 11.09 -17.07 -0.19 -2.97 16 12 N -0.25 -7.20 10.40 30.78 0.32 -6.88 16 13 N -0.14 -4.08 3.74 -11.43 -0.04 -4.13 16 14 C -0.32 -8.76 10.25 -14.81 -0.15 -8.91 16 15 H 0.12 2.85 7.83 -52.49 -0.41 2.44 16 16 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 17 N -0.78 -21.93 11.82 55.50 0.66 -21.28 16 18 Si 0.93 19.30 29.55 -169.99 -5.02 14.27 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 22 C -0.08 -2.02 11.49 -16.42 -0.19 -2.21 16 23 H 0.02 0.25 8.01 -51.93 -0.42 -0.16 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.09 1.37 6.84 -51.93 -0.36 1.02 16 26 H 0.04 0.41 7.96 -51.93 -0.41 0.00 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.81 7.69 -51.93 -0.40 0.41 16 32 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 33 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 34 H 0.15 3.33 7.70 -52.49 -0.40 2.93 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.15 3.35 8.06 -52.49 -0.42 2.92 16 LS Contribution 299.95 15.07 4.52 4.52 Total: -1.00 -31.91 299.95 -6.97 -38.88 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.31 Total: 3.85 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -0.72 Total: -14.11 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -0.26 Total: -40.63 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.18 Total: -6.79 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.91 -6.97 -38.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260813402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.786 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds