Wall clock time and date at job start Mon Mar 30 2020 04:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47009 * 285.96261 * 3 2 1 5 5 N 1.46900 * 109.47165 * 180.02562 * 4 3 2 6 6 C 1.46898 * 111.00190 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47032 * 34.99904 * 6 5 4 8 8 C 1.52999 * 109.47548 * 275.00196 * 6 5 4 9 9 C 1.52997 * 109.47317 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47060 * 59.99960 * 9 8 6 11 11 C 1.53002 * 109.47233 * 299.99657 * 10 9 8 12 12 C 1.52997 * 109.46817 * 60.00194 * 11 10 9 13 13 H 1.09002 * 109.47153 * 60.00231 * 12 11 10 14 14 N 1.46905 * 109.47252 * 180.02562 * 12 11 10 15 15 C 1.46906 * 110.99723 * 275.00122 * 14 12 11 16 16 C 1.50694 * 109.46780 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00354 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99506 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00262 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99810 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47345 * 59.99854 * 20 18 16 22 22 H 1.48503 * 109.47212 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47195 * 300.00260 * 20 18 16 24 24 H 1.08993 * 109.47169 * 165.96269 * 3 2 1 25 25 H 1.08995 * 109.47227 * 45.95892 * 3 2 1 26 26 H 1.09002 * 109.47167 * 59.99781 * 4 3 2 27 27 H 1.09005 * 109.46909 * 299.99830 * 4 3 2 28 28 H 1.00903 * 111.00169 * 303.95303 * 5 4 3 29 29 H 1.08996 * 109.46929 * 59.99097 * 8 6 5 30 30 H 1.09002 * 109.46716 * 299.99902 * 8 6 5 31 31 H 1.09002 * 109.47153 * 299.99641 * 9 8 6 32 32 H 1.09001 * 109.46832 * 179.97438 * 9 8 6 33 33 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 34 34 H 1.09004 * 109.46724 * 180.02562 * 10 9 8 35 35 H 1.08993 * 109.47662 * 180.02562 * 11 10 9 36 36 H 1.09002 * 109.47075 * 300.00932 * 11 10 9 37 37 H 1.00902 * 111.00313 * 151.04585 * 14 12 11 38 38 H 1.08994 * 109.46823 * 299.99794 * 15 14 12 39 39 H 1.09001 * 109.47053 * 59.99562 * 15 14 12 40 40 H 0.97004 * 120.00151 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.3958 1.3869 5 7 4.5871 -0.3946 1.3871 6 6 5.1137 -0.7709 2.7058 7 1 4.4586 -1.5143 3.1600 8 6 5.1780 0.4676 3.6018 9 6 5.7259 0.0755 4.9754 10 6 7.1296 -0.5119 4.8159 11 6 7.0653 -1.7505 3.9200 12 6 6.5175 -1.3584 2.5464 13 1 7.1730 -0.6152 2.0924 14 7 6.4552 -2.5477 1.6862 15 6 7.7473 -2.7919 1.0313 16 6 7.6451 -4.0172 0.1600 17 1 6.7134 -4.5599 0.0985 18 6 8.7408 -4.4446 -0.5596 19 7 9.8751 -3.7834 -0.4851 20 14 8.6139 -5.9631 -1.6403 21 1 7.5677 -5.7501 -2.6724 22 1 9.9201 -6.2100 -2.3023 23 1 8.2533 -7.1366 -0.8048 24 1 2.9708 0.9977 -0.2492 25 1 2.9716 -0.7135 -0.7387 26 1 2.7552 -1.3930 1.6362 27 1 2.7544 0.3185 2.1256 28 1 4.9494 -1.0007 0.6663 29 1 4.1779 0.8859 3.7157 30 1 5.8331 1.2110 3.1476 31 1 5.0704 -0.6677 5.4294 32 1 5.7720 0.9580 5.6136 33 1 7.7850 0.2312 4.3620 34 1 7.5197 -0.7916 5.7945 35 1 8.0652 -2.1693 3.8067 36 1 6.4098 -2.4937 4.3739 37 1 5.7150 -2.4635 1.0057 38 1 8.0123 -1.9306 0.4181 39 1 8.5150 -2.9484 1.7891 40 1 10.6461 -4.0844 -0.9911 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034146242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:02 Heat of formation + Delta-G solvation = 7.241032 kcal Electronic energy + Delta-G solvation = -18476.560471 eV Core-core repulsion = 15711.145729 eV Total energy + Delta-G solvation = -2765.414742 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.21563 -37.09843 -35.25214 -34.57289 -32.40336 -31.38325 -29.28824 -27.84395 -25.75367 -23.52730 -22.25113 -21.27408 -20.73075 -19.49992 -17.69592 -16.74992 -16.00430 -15.32785 -15.09207 -14.77078 -14.37910 -14.16607 -14.02609 -13.73909 -13.34610 -12.96881 -12.72900 -12.50711 -12.33577 -12.20892 -11.72209 -11.62116 -11.51575 -11.31995 -11.05998 -10.91209 -10.82371 -10.67198 -10.40229 -10.29520 -10.03483 -9.62382 -9.17859 -8.50910 -8.45862 -7.37033 -6.05950 -4.08360 2.57286 2.64213 3.31119 3.35836 3.38345 3.65633 4.37221 4.39678 4.76557 4.81093 4.91746 4.94133 5.15327 5.25222 5.28999 5.30252 5.48656 5.59505 5.61022 5.66616 5.71590 5.77032 5.80242 5.96298 6.09896 6.21906 6.30227 6.34252 6.42995 6.63566 6.70726 7.03897 7.23550 7.28619 7.39112 7.44174 7.74345 8.09610 8.31002 8.54482 9.00233 9.56816 11.04847 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.005948 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.261513 B = 4706.393795 C = 6467.224091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.213 3.787 3 C -0.029 4.029 4 C 0.064 3.936 5 N -0.688 5.688 6 C 0.089 3.911 7 H 0.052 0.948 8 C -0.104 4.104 9 C -0.118 4.118 10 C -0.120 4.120 11 C -0.103 4.103 12 C 0.086 3.914 13 H 0.045 0.955 14 N -0.686 5.686 15 C 0.196 3.804 16 C -0.517 4.517 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.896 5.896 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.118 0.882 25 H 0.111 0.889 26 H 0.041 0.959 27 H 0.078 0.922 28 H 0.347 0.653 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.320 0.680 38 H -0.012 1.012 39 H 0.029 0.971 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.451 9.035 6.715 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.105 4.105 3 C -0.069 4.069 4 C -0.067 4.067 5 N -0.322 5.322 6 C -0.021 4.021 7 H 0.070 0.930 8 C -0.142 4.142 9 C -0.156 4.156 10 C -0.158 4.158 11 C -0.142 4.142 12 C -0.025 4.025 13 H 0.063 0.937 14 N -0.319 5.319 15 C 0.070 3.930 16 C -0.555 4.555 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.136 0.864 25 H 0.129 0.871 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.169 0.831 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.139 0.861 38 H 0.006 0.994 39 H 0.047 0.953 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.782 9.251 7.243 15.288 hybrid contribution 0.385 -1.106 -1.340 1.780 sum -9.397 8.145 5.903 13.765 Atomic orbital electron populations 1.81225 1.13133 1.09263 1.08530 1.29175 0.95266 0.92883 0.93162 1.19287 0.81086 1.06323 1.00216 1.21847 0.89039 1.00670 0.95096 1.60498 1.05712 1.59157 1.06851 1.21686 0.96074 0.95636 0.88672 0.93048 1.21499 1.00789 0.97447 0.94494 1.21533 0.97009 1.00256 0.96790 1.21565 0.96587 0.98074 0.99578 1.21474 1.01885 0.96676 0.94170 1.21598 0.93944 0.91917 0.95045 0.93711 1.60791 1.09245 1.35968 1.25917 1.19583 0.85270 0.95425 0.92744 1.21129 0.97541 1.11170 1.25700 0.92160 1.24966 0.95275 0.97178 0.96948 1.69946 1.01627 1.39879 1.42090 0.86574 0.77109 0.83255 0.80510 1.20281 1.21344 1.20223 0.86411 0.87064 0.94116 0.90330 0.83060 0.92492 0.91292 0.92259 0.92295 0.92113 0.92287 0.91464 0.91832 0.86079 0.99375 0.95281 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.96 18.54 42.15 0.78 -5.18 16 2 C 0.21 2.20 15.43 -20.76 -0.32 1.88 16 3 C -0.03 -0.22 5.96 -29.52 -0.18 -0.39 16 4 C 0.06 0.59 5.44 -3.82 -0.02 0.57 16 5 N -0.69 -7.86 6.30 -106.72 -0.67 -8.53 16 6 C 0.09 1.14 2.09 -67.71 -0.14 1.00 16 7 H 0.05 0.69 7.80 -51.93 -0.41 0.28 16 8 C -0.10 -1.16 5.43 -26.73 -0.15 -1.30 16 9 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 10 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 11 C -0.10 -1.58 5.43 -26.73 -0.15 -1.73 16 12 C 0.09 1.38 2.09 -67.71 -0.14 1.24 16 13 H 0.04 0.80 7.80 -51.93 -0.41 0.40 16 14 N -0.69 -13.41 6.28 -107.99 -0.68 -14.09 16 15 C 0.20 4.87 5.24 -4.98 -0.03 4.84 16 16 C -0.52 -14.04 9.32 -34.44 -0.32 -14.36 16 17 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 20 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H 0.12 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.40 8.06 -51.93 -0.42 -0.02 16 27 H 0.08 0.69 7.43 -51.93 -0.39 0.30 16 28 H 0.35 4.35 6.32 -39.29 -0.25 4.10 16 29 H 0.06 0.57 7.45 -51.93 -0.39 0.19 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.17 7.45 -51.93 -0.39 0.79 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.32 5.81 6.31 -39.29 -0.25 5.56 16 38 H -0.01 -0.30 8.06 -51.93 -0.42 -0.72 16 39 H 0.03 0.79 7.44 -51.93 -0.39 0.40 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 324.35 15.07 4.89 4.89 Total: -1.00 -30.04 324.35 -8.43 -38.47 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.62 Total: 3.43 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -1.85 Total: -9.78 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.17 Total: -53.14 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.04 -8.43 -38.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034146242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.712 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds