Wall clock time and date at job start Mon Mar 30 2020 04:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47009 * 285.96261 * 3 2 1 5 5 N 1.46900 * 109.47165 * 180.02562 * 4 3 2 6 6 C 1.46898 * 111.00190 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47032 * 34.99904 * 6 5 4 8 8 C 1.52999 * 109.47548 * 275.00196 * 6 5 4 9 9 C 1.52997 * 109.47317 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47060 * 59.99960 * 9 8 6 11 11 C 1.53002 * 109.47233 * 299.99657 * 10 9 8 12 12 C 1.52997 * 109.46817 * 60.00194 * 11 10 9 13 13 H 1.09002 * 109.47153 * 60.00231 * 12 11 10 14 14 N 1.46905 * 109.47252 * 180.02562 * 12 11 10 15 15 C 1.46906 * 110.99723 * 275.00122 * 14 12 11 16 16 C 1.50694 * 109.46780 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00354 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99506 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00262 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99810 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47345 * 59.99854 * 20 18 16 22 22 H 1.48503 * 109.47212 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47195 * 300.00260 * 20 18 16 24 24 H 1.08993 * 109.47169 * 165.96269 * 3 2 1 25 25 H 1.08995 * 109.47227 * 45.95892 * 3 2 1 26 26 H 1.09002 * 109.47167 * 59.99781 * 4 3 2 27 27 H 1.09005 * 109.46909 * 299.99830 * 4 3 2 28 28 H 1.00903 * 111.00169 * 303.95303 * 5 4 3 29 29 H 1.08996 * 109.46929 * 59.99097 * 8 6 5 30 30 H 1.09002 * 109.46716 * 299.99902 * 8 6 5 31 31 H 1.09002 * 109.47153 * 299.99641 * 9 8 6 32 32 H 1.09001 * 109.46832 * 179.97438 * 9 8 6 33 33 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 34 34 H 1.09004 * 109.46724 * 180.02562 * 10 9 8 35 35 H 1.08993 * 109.47662 * 180.02562 * 11 10 9 36 36 H 1.09002 * 109.47075 * 300.00932 * 11 10 9 37 37 H 1.00902 * 111.00313 * 151.04585 * 14 12 11 38 38 H 1.08994 * 109.46823 * 299.99794 * 15 14 12 39 39 H 1.09001 * 109.47053 * 59.99562 * 15 14 12 40 40 H 0.97004 * 120.00151 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.3958 1.3869 5 7 4.5871 -0.3946 1.3871 6 6 5.1137 -0.7709 2.7058 7 1 4.4586 -1.5143 3.1600 8 6 5.1780 0.4676 3.6018 9 6 5.7259 0.0755 4.9754 10 6 7.1296 -0.5119 4.8159 11 6 7.0653 -1.7505 3.9200 12 6 6.5175 -1.3584 2.5464 13 1 7.1730 -0.6152 2.0924 14 7 6.4552 -2.5477 1.6862 15 6 7.7473 -2.7919 1.0313 16 6 7.6451 -4.0172 0.1600 17 1 6.7134 -4.5599 0.0985 18 6 8.7408 -4.4446 -0.5596 19 7 9.8751 -3.7834 -0.4851 20 14 8.6139 -5.9631 -1.6403 21 1 7.5677 -5.7501 -2.6724 22 1 9.9201 -6.2100 -2.3023 23 1 8.2533 -7.1366 -0.8048 24 1 2.9708 0.9977 -0.2492 25 1 2.9716 -0.7135 -0.7387 26 1 2.7552 -1.3930 1.6362 27 1 2.7544 0.3185 2.1256 28 1 4.9494 -1.0007 0.6663 29 1 4.1779 0.8859 3.7157 30 1 5.8331 1.2110 3.1476 31 1 5.0704 -0.6677 5.4294 32 1 5.7720 0.9580 5.6136 33 1 7.7850 0.2312 4.3620 34 1 7.5197 -0.7916 5.7945 35 1 8.0652 -2.1693 3.8067 36 1 6.4098 -2.4937 4.3739 37 1 5.7150 -2.4635 1.0057 38 1 8.0123 -1.9306 0.4181 39 1 8.5150 -2.9484 1.7891 40 1 10.6461 -4.0844 -0.9911 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034146242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:02 Heat of formation + Delta-G solvation = -13.304619 kcal Electronic energy + Delta-G solvation = -18477.451397 eV Core-core repulsion = 15711.145729 eV Total energy + Delta-G solvation = -2766.305668 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.34749 -37.98624 -36.27432 -36.11770 -34.29657 -32.30635 -30.64734 -29.03316 -27.45676 -24.56850 -23.82110 -22.28820 -22.10070 -20.62753 -18.75730 -18.31089 -17.25288 -16.59862 -16.38493 -16.07845 -15.63464 -15.23041 -15.17312 -14.94133 -14.44038 -14.25224 -13.99062 -13.76853 -13.66034 -13.26100 -13.23425 -12.89817 -12.72712 -12.57898 -12.48452 -12.19619 -12.03861 -12.03691 -11.81275 -11.45799 -11.38941 -11.10656 -10.83557 -10.61440 -9.39161 -9.07580 -8.18649 -6.29484 1.43982 1.46599 1.54457 1.74913 1.83368 2.42447 2.82678 3.15125 3.47355 3.51222 3.79293 4.04630 4.15735 4.22341 4.24932 4.44577 4.46949 4.55347 4.60410 4.65493 4.70070 4.96150 4.99700 5.02745 5.06725 5.10869 5.23475 5.26968 5.31599 5.37504 5.40255 5.44881 5.59203 5.67609 6.06096 6.11217 6.30338 6.49881 6.61605 6.77803 6.94087 7.41584 8.92449 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.005948 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.261513 B = 4706.393795 C = 6467.224091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.241 3.759 3 C -0.020 4.020 4 C 0.066 3.934 5 N -0.688 5.688 6 C 0.098 3.902 7 H 0.051 0.949 8 C -0.099 4.099 9 C -0.113 4.113 10 C -0.115 4.115 11 C -0.102 4.102 12 C 0.086 3.914 13 H 0.024 0.976 14 N -0.684 5.684 15 C 0.215 3.785 16 C -0.534 4.534 17 H 0.064 0.936 18 C 0.004 3.996 19 N -0.933 5.933 20 Si 0.969 3.031 21 H -0.264 1.264 22 H -0.285 1.285 23 H -0.272 1.272 24 H 0.139 0.861 25 H 0.125 0.875 26 H 0.037 0.963 27 H 0.088 0.912 28 H 0.340 0.660 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.033 0.967 36 H 0.063 0.937 37 H 0.330 0.670 38 H -0.038 1.038 39 H -0.003 1.003 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.726 9.297 6.913 15.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.076 4.076 3 C -0.060 4.060 4 C -0.064 4.064 5 N -0.322 5.322 6 C -0.012 4.012 7 H 0.069 0.931 8 C -0.137 4.137 9 C -0.151 4.151 10 C -0.153 4.153 11 C -0.141 4.141 12 C -0.024 4.024 13 H 0.042 0.958 14 N -0.317 5.317 15 C 0.087 3.913 16 C -0.572 4.572 17 H 0.083 0.917 18 C -0.194 4.194 19 N -0.573 5.573 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.211 1.211 23 H -0.197 1.197 24 H 0.157 0.843 25 H 0.143 0.857 26 H 0.055 0.945 27 H 0.106 0.894 28 H 0.161 0.839 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.150 0.850 38 H -0.020 1.020 39 H 0.015 0.985 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.086 9.526 7.455 16.408 hybrid contribution 0.823 -1.165 -1.365 1.974 sum -10.263 8.362 6.090 14.572 Atomic orbital electron populations 1.81258 1.14917 1.11343 1.10387 1.29548 0.95491 0.91082 0.91443 1.19378 0.79072 1.07924 0.99616 1.21869 0.87373 1.00848 0.96332 1.60542 1.07163 1.58622 1.05831 1.21584 0.93374 0.96393 0.89824 0.93126 1.21483 1.01871 0.96200 0.94196 1.21523 0.95494 1.01210 0.96877 1.21530 0.98159 0.96311 0.99266 1.21453 0.99796 0.98319 0.94543 1.21668 0.96257 0.90162 0.94348 0.95798 1.60650 1.07035 1.38236 1.25742 1.19159 0.86931 0.93932 0.91301 1.21508 0.97799 1.11847 1.26033 0.91740 1.25885 0.94815 1.00345 0.98350 1.70082 1.02433 1.41688 1.43115 0.85453 0.77375 0.79138 0.78715 1.18908 1.21091 1.19674 0.84328 0.85675 0.94505 0.89366 0.83934 0.90450 0.91901 0.91631 0.90068 0.92537 0.90943 0.94791 0.91857 0.84987 1.01998 0.98525 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.97 18.54 20.01 0.37 -12.60 16 2 C 0.24 4.54 15.43 89.44 1.38 5.92 16 3 C -0.02 -0.24 5.96 28.79 0.17 -0.07 16 4 C 0.07 1.04 5.44 86.30 0.47 1.51 16 5 N -0.69 -14.50 6.30 -491.56 -3.09 -17.59 16 6 C 0.10 2.36 2.09 44.92 0.09 2.46 16 7 H 0.05 1.25 7.80 -2.39 -0.02 1.24 16 8 C -0.10 -1.95 5.43 30.59 0.17 -1.79 16 9 C -0.11 -2.09 5.92 30.59 0.18 -1.91 16 10 C -0.11 -2.67 5.92 30.60 0.18 -2.49 16 11 C -0.10 -3.19 5.43 30.59 0.17 -3.02 16 12 C 0.09 2.80 2.09 44.92 0.09 2.90 16 13 H 0.02 0.89 7.80 -2.39 -0.02 0.87 16 14 N -0.68 -27.21 6.28 -495.56 -3.11 -30.32 16 15 C 0.21 11.07 5.24 85.55 0.45 11.52 16 16 C -0.53 -29.38 9.32 25.60 0.24 -29.14 16 17 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 18 C 0.00 0.25 5.46 84.66 0.46 0.71 16 19 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 20 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 21 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 22 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 0.63 8.06 -2.39 -0.02 0.61 16 27 H 0.09 1.26 7.43 -2.38 -0.02 1.24 16 28 H 0.34 8.11 6.32 -89.69 -0.57 7.54 16 29 H 0.08 1.27 7.45 -2.39 -0.02 1.25 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.03 1.25 7.45 -2.39 -0.02 1.23 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.33 11.96 6.31 -89.69 -0.57 11.39 16 38 H -0.04 -2.10 8.06 -2.39 -0.02 -2.12 16 39 H 0.00 -0.19 7.44 -2.39 -0.02 -0.21 16 40 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -66.29 324.35 0.42 -65.87 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -0.11 Total: 17.93 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: 4.05 Total: -13.41 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -5.55 Total: -115.67 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -66.29 0.42 -65.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034146242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.562 kcal (2) G-P(sol) polarization free energy of solvation -66.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds