Wall clock time and date at job start Mon Mar 30 2020 04:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47162 * 2 1 4 4 N 1.46898 * 109.47457 * 180.02562 * 3 2 1 5 5 C 1.46902 * 111.00309 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46830 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46895 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47290 * 179.97438 * 7 6 5 9 9 C 1.39875 * 126.03728 * 89.97551 * 8 7 6 10 10 N 1.30839 * 108.20184 * 180.02562 * 9 8 7 11 11 N 1.40085 * 108.20364 * 0.02562 * 10 9 8 12 12 C 1.46506 * 126.03688 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46726 * 304.99793 * 12 11 10 14 14 H 1.08005 * 120.00478 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99831 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99979 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99877 * 359.97438 * 15 13 12 18 18 H 1.48492 * 109.47126 * 89.99973 * 17 15 13 19 19 H 1.48501 * 109.46849 * 210.00517 * 17 15 13 20 20 H 1.48502 * 109.46959 * 330.00148 * 17 15 13 21 21 C 1.34949 * 107.93019 * 359.97438 * 11 10 9 22 22 H 1.08991 * 109.47459 * 59.99190 * 1 2 3 23 23 H 1.08996 * 109.47204 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46526 * 299.99571 * 1 2 3 25 25 H 1.09003 * 109.46526 * 240.00429 * 2 1 3 26 26 H 1.08996 * 109.47042 * 120.00576 * 2 1 3 27 27 H 1.09011 * 109.46789 * 60.00697 * 3 2 1 28 28 H 1.08991 * 109.47595 * 300.00726 * 3 2 1 29 29 H 1.00892 * 111.00181 * 56.04489 * 4 3 2 30 30 H 1.08994 * 109.46936 * 60.00084 * 5 4 3 31 31 H 1.09001 * 109.46950 * 299.99686 * 5 4 3 32 32 H 1.08999 * 109.47176 * 59.99836 * 6 5 4 33 33 H 1.08996 * 109.47547 * 299.99842 * 6 5 4 34 34 H 1.08999 * 109.47185 * 60.00034 * 7 6 5 35 35 H 1.09001 * 109.47075 * 299.99841 * 7 6 5 36 36 H 1.08003 * 125.89835 * 359.76152 * 9 8 7 37 37 H 1.08998 * 109.47019 * 64.99789 * 12 11 10 38 38 H 1.09005 * 109.47133 * 184.99915 * 12 11 10 39 39 H 0.96999 * 119.99894 * 179.97438 * 16 15 13 40 40 H 1.07997 * 126.13040 * 180.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0354 2.8140 0.0000 6 6 5.5649 2.7731 0.0000 7 6 6.1132 4.2014 -0.0001 8 6 7.6197 4.1613 0.0005 9 6 8.4427 4.1386 -1.1302 10 7 9.6876 4.1051 -0.7290 11 7 9.6960 4.1047 0.6719 12 6 10.8855 4.0732 1.5266 13 6 11.7377 2.8864 1.1577 14 1 11.4250 2.2223 0.3655 15 6 12.9169 2.6483 1.8315 16 7 13.6609 1.6129 1.5092 17 14 13.4583 3.7973 3.2012 18 1 12.9111 3.3171 4.4954 19 1 14.9415 3.8219 3.2693 20 1 12.9525 5.1665 2.9276 21 6 8.4151 4.1397 1.0950 22 1 -0.3634 0.5139 -0.8898 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8901 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9562 0.8902 28 1 1.6766 1.9563 -0.8898 29 1 3.8703 0.9166 -0.7821 30 1 3.6863 3.3367 0.8904 31 1 3.6856 3.3378 -0.8896 32 1 5.9143 2.2501 -0.8902 33 1 5.9144 2.2494 0.8897 34 1 5.7637 4.7248 0.8899 35 1 5.7637 4.7248 -0.8901 36 1 8.1082 4.1433 -2.1571 37 1 11.4584 4.9897 1.3859 38 1 10.5810 3.9916 2.5701 39 1 14.4906 1.4456 1.9830 40 1 8.0841 4.1491 2.1230 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054680023.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:26 Heat of formation + Delta-G solvation = 51.232221 kcal Electronic energy + Delta-G solvation = -17362.335433 eV Core-core repulsion = 14598.828293 eV Total energy + Delta-G solvation = -2763.507141 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42810 -37.33877 -34.80784 -33.57848 -32.34669 -31.42644 -29.20311 -27.81835 -25.77624 -23.70081 -22.71773 -21.86629 -21.02845 -20.01917 -19.36506 -16.98181 -16.45234 -15.99110 -15.11203 -14.89004 -14.74307 -14.45813 -14.16038 -13.53661 -13.28051 -13.08759 -12.71391 -12.53382 -12.41747 -12.33875 -12.01939 -11.80170 -11.51613 -11.33332 -11.04352 -11.02219 -10.93800 -10.65504 -10.50761 -10.25618 -9.80815 -9.54196 -8.76746 -8.58951 -8.56120 -7.59443 -6.22622 -4.24875 2.73547 3.15452 3.22682 3.23162 3.42084 3.55004 4.00678 4.23511 4.66704 4.77841 5.00088 5.04503 5.08782 5.12905 5.28045 5.35028 5.41866 5.46392 5.48247 5.51992 5.67812 5.72183 5.82971 5.85780 5.91123 5.99327 6.09340 6.15385 6.28001 6.47338 6.52460 6.73372 6.75323 6.89671 7.21820 7.25124 7.43913 7.83275 8.34644 8.57904 8.87296 9.32304 10.90137 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.031698 B = 0.003155 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.120043 B = 8873.824810 C = 9257.275538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.058 3.942 4 N -0.694 5.694 5 C 0.059 3.941 6 C -0.112 4.112 7 C -0.027 4.027 8 C -0.261 4.261 9 C 0.021 3.979 10 N -0.276 5.276 11 N -0.327 5.327 12 C 0.229 3.771 13 C -0.534 4.534 14 H 0.085 0.915 15 C 0.076 3.924 16 N -0.887 5.887 17 Si 0.873 3.127 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.265 1.265 21 C 0.048 3.952 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.026 0.974 29 H 0.341 0.659 30 H 0.069 0.931 31 H 0.027 0.973 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.169 0.831 37 H 0.041 0.959 38 H 0.046 0.954 39 H 0.268 0.732 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.582 2.437 -1.469 22.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.071 4.071 4 N -0.325 5.325 5 C -0.070 4.070 6 C -0.150 4.150 7 C -0.066 4.066 8 C -0.273 4.273 9 C -0.164 4.164 10 N -0.099 5.099 11 N -0.107 5.107 12 C 0.110 3.890 13 C -0.572 4.572 14 H 0.103 0.897 15 C -0.128 4.128 16 N -0.525 5.525 17 Si 0.699 3.301 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.189 1.189 21 C -0.101 4.101 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.159 0.841 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.186 0.814 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -20.953 2.235 -0.998 21.096 hybrid contribution -0.574 0.700 0.110 0.912 sum -21.527 2.934 -0.888 21.745 Atomic orbital electron populations 1.21730 0.95666 1.01753 1.01736 1.21519 0.95488 0.96527 1.02706 1.21993 0.87946 0.96873 1.00317 1.60455 1.07018 1.14778 1.50229 1.22030 0.95880 0.88919 1.00174 1.21602 0.92762 0.97650 1.03035 1.19654 0.90075 0.95579 1.01338 1.19796 0.95624 1.19742 0.92142 1.23593 0.90621 1.03170 0.99046 1.77425 1.20296 1.22019 0.90151 1.48961 1.05868 1.51492 1.04391 1.20013 0.81364 0.99590 0.88007 1.21099 1.05383 1.09492 1.21221 0.89665 1.24840 0.95821 0.95207 0.96926 1.69873 1.13806 1.27559 1.41219 0.86900 0.78848 0.81667 0.82647 1.19716 1.20499 1.18923 1.22258 0.85136 1.03198 0.99502 0.92919 0.92553 0.92650 0.92157 0.91032 0.91183 0.95582 0.84147 0.91229 0.95516 0.92112 0.91093 0.92141 0.92090 0.81429 0.94118 0.93670 0.92172 0.82055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.12 -0.94 6.19 -26.73 -0.17 -1.11 16 3 C 0.06 0.49 5.68 -3.83 -0.02 0.47 16 4 N -0.69 -6.96 6.50 -113.78 -0.74 -7.70 16 5 C 0.06 0.59 5.69 -3.82 -0.02 0.57 16 6 C -0.11 -1.33 5.46 -26.73 -0.15 -1.47 16 7 C -0.03 -0.33 5.70 -27.88 -0.16 -0.49 16 8 C -0.26 -4.33 5.35 -105.05 -0.56 -4.89 16 9 C 0.02 0.38 11.96 -17.36 -0.21 0.17 16 10 N -0.28 -6.35 12.41 30.63 0.38 -5.97 16 11 N -0.33 -7.39 3.67 -62.54 -0.23 -7.62 16 12 C 0.23 5.52 5.33 -5.19 -0.03 5.49 16 13 C -0.53 -15.30 9.79 -34.44 -0.34 -15.63 16 14 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 15 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 16 N -0.89 -26.88 13.96 55.43 0.77 -26.11 16 17 Si 0.87 20.36 27.47 -169.99 -4.67 15.69 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 21 C 0.05 0.89 11.36 -17.22 -0.20 0.70 16 22 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.34 3.22 8.73 -39.30 -0.34 2.88 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.17 2.50 8.06 -52.48 -0.42 2.07 16 37 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 38 H 0.05 0.99 7.50 -51.93 -0.39 0.60 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 40 H 0.16 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 334.42 15.07 5.04 5.04 Total: -1.00 -31.62 334.42 -8.06 -39.68 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.04 Total: 1.71 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -1.57 Total: -14.72 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.18 Total: -47.41 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.62 -8.06 -39.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054680023.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.913 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds