Wall clock time and date at job start Mon Mar 30 2020 04:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47460 * 2 1 4 4 H 1.09006 * 109.46912 * 55.00402 * 3 2 1 5 5 N 1.46900 * 109.47289 * 295.00630 * 3 2 1 6 6 C 1.52997 * 109.47500 * 175.00055 * 3 2 1 7 7 C 1.50697 * 109.47181 * 185.00299 * 6 3 2 8 8 N 1.30494 * 125.64669 * 269.95373 * 7 6 3 9 9 C 1.34139 * 109.25621 * 180.02562 * 8 7 6 10 10 C 1.34667 * 108.01541 * 359.73530 * 9 8 7 11 11 N 1.35042 * 125.65380 * 90.00531 * 7 6 3 12 12 C 1.46505 * 126.39355 * 359.95869 * 11 7 6 13 13 C 1.52997 * 109.47212 * 85.00361 * 12 11 7 14 14 C 1.52992 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47592 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00057 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00356 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99989 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00117 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46744 * 90.00434 * 19 17 15 21 21 H 1.48500 * 109.47304 * 210.00023 * 19 17 15 22 22 H 1.48498 * 109.47341 * 330.00626 * 19 17 15 23 23 H 1.08999 * 109.47320 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46714 * 299.99444 * 1 2 3 25 25 H 1.08992 * 109.47445 * 59.99763 * 1 2 3 26 26 H 1.09005 * 109.46978 * 240.00093 * 2 1 3 27 27 H 1.09002 * 109.46965 * 120.00397 * 2 1 3 28 28 H 1.00894 * 111.00097 * 176.04565 * 5 3 2 29 29 H 1.00899 * 110.99781 * 299.99758 * 5 3 2 30 30 H 1.09004 * 109.46687 * 65.00043 * 6 3 2 31 31 H 1.09000 * 109.46857 * 305.00365 * 6 3 2 32 32 H 1.07995 * 125.98771 * 180.02562 * 9 8 7 33 33 H 1.08002 * 126.58990 * 180.28301 * 10 9 8 34 34 H 1.09002 * 109.47068 * 205.00421 * 12 11 7 35 35 H 1.09001 * 109.47372 * 325.00508 * 12 11 7 36 36 H 1.09002 * 109.47153 * 300.00008 * 13 12 11 37 37 H 1.08998 * 109.47533 * 59.99637 * 13 12 11 38 38 H 1.09002 * 109.47103 * 300.00247 * 14 13 12 39 39 H 1.09001 * 109.47066 * 60.00169 * 14 13 12 40 40 H 0.96996 * 119.99885 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 7 1.6514 2.0993 -1.2551 6 6 3.5649 1.4442 0.1257 7 6 4.0570 2.8632 0.2493 8 7 4.3931 3.6408 -0.7434 9 6 4.7826 4.8304 -0.2612 10 6 4.6785 4.7902 1.0808 11 7 4.2242 3.5405 1.4056 12 6 3.9619 3.0344 2.7552 13 6 5.1874 2.2705 3.2606 14 6 4.9137 1.7425 4.6702 15 6 6.1206 0.9896 5.1678 16 1 6.9956 0.8973 4.5415 17 6 6.1082 0.4195 6.4231 18 7 5.0429 0.5323 7.1861 19 14 7.6039 -0.5144 7.0396 20 1 8.5154 0.4216 7.7456 21 1 7.1696 -1.5825 7.9754 22 1 8.3159 -1.1245 5.8881 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.9204 3.0717 -1.2527 29 1 2.0421 1.6180 -2.0512 30 1 4.0029 0.9835 -0.7597 31 1 3.8570 0.8799 1.0113 32 1 5.1162 5.6741 -0.8470 33 1 4.9112 5.5895 1.7688 34 1 3.7541 3.8706 3.4228 35 1 3.1013 2.3657 2.7316 36 1 5.3952 1.4343 2.5930 37 1 6.0480 2.9390 3.2842 38 1 4.7062 2.5790 5.3376 39 1 4.0531 1.0740 4.6470 40 1 5.0341 0.1309 8.0691 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062803187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:18 Heat of formation + Delta-G solvation = 24.856323 kcal Electronic energy + Delta-G solvation = -18486.095575 eV Core-core repulsion = 15721.444690 eV Total energy + Delta-G solvation = -2764.650885 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.96018 -37.13057 -35.38554 -33.11689 -31.68674 -30.96165 -30.30872 -27.50362 -26.77683 -23.99198 -23.42943 -21.19365 -20.79259 -20.47626 -19.38688 -16.98089 -16.25044 -16.12509 -15.24321 -14.95181 -14.55572 -14.47953 -13.98903 -13.84254 -13.43663 -13.21632 -13.06674 -12.62971 -12.32553 -12.13015 -11.82675 -11.67214 -11.31056 -11.05861 -10.96701 -10.87779 -10.74977 -10.70065 -10.03091 -9.89583 -9.73880 -9.39521 -9.08768 -8.78595 -8.48151 -8.12449 -6.13018 -4.16369 2.24503 3.04692 3.24481 3.26997 3.31329 3.34707 4.35823 4.41004 4.60092 4.92440 4.94800 5.00294 5.17462 5.17827 5.23536 5.35851 5.47524 5.51801 5.61659 5.68723 5.70537 5.83195 5.89792 5.95816 6.02214 6.20206 6.23651 6.35944 6.46771 6.58690 6.78448 6.93082 7.19833 7.39719 7.46502 7.50675 7.56464 7.84223 8.24983 8.26276 8.89502 9.48913 10.98147 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.019239 B = 0.005121 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.006729 B = 5466.591913 C = 6450.589856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.098 3.902 4 H 0.077 0.923 5 N -0.836 5.836 6 C -0.075 4.075 7 C 0.204 3.796 8 N -0.500 5.500 9 C -0.039 4.039 10 C -0.055 4.055 11 N -0.441 5.441 12 C 0.097 3.903 13 C -0.122 4.122 14 C 0.025 3.975 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.345 0.655 29 H 0.338 0.662 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.165 0.835 33 H 0.170 0.830 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.019 0.981 39 H 0.020 0.980 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.902 3.662 -12.964 14.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.015 4.015 4 H 0.095 0.905 5 N -0.365 5.365 6 C -0.116 4.116 7 C -0.058 4.058 8 N -0.219 5.219 9 C -0.187 4.187 10 C -0.189 4.189 11 N -0.122 5.122 12 C -0.025 4.025 13 C -0.160 4.160 14 C -0.012 4.012 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.159 0.841 29 H 0.150 0.850 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.182 0.818 33 H 0.187 0.813 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.789 3.168 -13.241 15.214 hybrid contribution 2.099 0.074 1.356 2.501 sum -4.690 3.242 -11.885 13.182 Atomic orbital electron populations 1.21645 0.95132 1.00807 1.02427 1.21545 0.96879 0.94846 1.02155 1.21448 0.90536 0.95821 0.93692 0.90504 1.59026 1.66476 1.07481 1.03547 1.20989 0.97901 0.88117 1.04584 1.23043 1.04833 0.96873 0.81097 1.70168 1.18409 1.02994 1.30339 1.22171 1.07752 0.96891 0.91910 1.22723 1.08891 0.89287 0.98010 1.45652 1.47173 1.11126 1.08242 1.22298 1.01074 1.00039 0.79041 1.22037 0.94744 0.98576 1.00632 1.19045 0.97548 0.96150 0.88482 1.21154 1.00459 1.34026 1.00582 0.92671 1.25005 0.96161 0.96278 0.96799 1.69950 1.28267 1.45055 1.10008 0.86573 0.82898 0.79668 0.78787 1.20574 1.21075 1.19828 0.93424 0.93140 0.91661 0.91963 0.91313 0.84129 0.85017 0.89176 0.89336 0.81783 0.81265 0.89235 0.89385 0.92614 0.92585 0.96313 0.96209 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.80 37.16 0.36 -1.09 16 2 C -0.12 -1.22 5.58 -26.73 -0.15 -1.36 16 3 C 0.10 1.14 2.79 -67.72 -0.19 0.95 16 4 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 5 N -0.84 -9.48 8.65 -4.67 -0.04 -9.52 16 6 C -0.07 -0.96 5.02 -27.89 -0.14 -1.10 16 7 C 0.20 3.06 6.46 -155.42 -1.00 2.05 16 8 N -0.50 -7.78 10.80 -10.82 -0.12 -7.89 16 9 C -0.04 -0.55 11.87 -17.81 -0.21 -0.76 16 10 C -0.05 -0.77 11.58 -16.56 -0.19 -0.96 16 11 N -0.44 -6.66 2.75 -113.91 -0.31 -6.97 16 12 C 0.10 1.50 5.68 -4.04 -0.02 1.48 16 13 C -0.12 -2.32 5.48 -26.74 -0.15 -2.47 16 14 C 0.03 0.61 4.97 -27.89 -0.14 0.47 16 15 C -0.52 -14.26 9.11 -34.44 -0.31 -14.58 16 16 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 19 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 25 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.35 4.35 7.93 -39.30 -0.31 4.04 16 29 H 0.34 3.51 9.00 -39.29 -0.35 3.16 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.09 1.18 7.36 -51.93 -0.38 0.80 16 32 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.17 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.09 1.30 8.13 -51.93 -0.42 0.88 16 35 H 0.09 1.29 7.92 -51.93 -0.41 0.88 16 36 H 0.06 1.08 7.67 -51.93 -0.40 0.68 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 331.34 15.07 4.99 4.99 Total: -1.00 -29.51 331.34 -8.88 -38.38 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.87 Total: 5.88 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -2.24 Total: -15.83 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.27 Total: -49.53 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.51 -8.88 -38.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062803187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.241 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds