Wall clock time and date at job start Mon Mar 30 2020 04:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30838 * 125.90118 * 2 1 4 4 N 1.40080 * 108.20978 * 180.02562 * 3 2 1 5 5 C 1.46494 * 126.04182 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46960 * 270.02291 * 5 4 3 7 7 C 1.50706 * 109.47350 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99529 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00002 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00330 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99692 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47164 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.46966 * 120.00367 * 11 9 7 14 14 H 1.48510 * 109.46795 * 239.99954 * 11 9 7 15 15 C 1.34952 * 107.92176 * 359.97438 * 4 3 2 16 16 C 1.50706 * 126.12552 * 179.97438 * 15 4 3 17 17 C 1.35314 * 107.74638 * 0.22872 * 15 4 3 18 18 C 1.50701 * 126.03912 * 179.76946 * 17 15 4 19 19 C 1.52998 * 109.46905 * 89.99935 * 18 17 15 20 20 H 1.09000 * 109.47559 * 55.00294 * 19 18 17 21 21 C 1.52999 * 109.47147 * 174.99987 * 19 18 17 22 22 N 1.46906 * 109.47226 * 294.99663 * 19 18 17 23 23 H 1.09000 * 109.47459 * 90.02091 * 1 2 3 24 24 H 1.08994 * 109.47329 * 210.02444 * 1 2 3 25 25 H 1.09000 * 109.46974 * 330.02576 * 1 2 3 26 26 H 1.09003 * 109.47243 * 30.02097 * 5 4 3 27 27 H 1.09000 * 109.47872 * 150.02634 * 5 4 3 28 28 H 1.09002 * 109.47704 * 299.99774 * 6 5 4 29 29 H 1.09004 * 109.47182 * 59.99881 * 6 5 4 30 30 H 0.97005 * 120.00404 * 179.97438 * 10 9 7 31 31 H 1.09001 * 109.46953 * 90.02591 * 16 15 4 32 32 H 1.09000 * 109.47318 * 210.02189 * 16 15 4 33 33 H 1.09000 * 109.47161 * 330.02819 * 16 15 4 34 34 H 1.08994 * 109.47034 * 210.00121 * 18 17 15 35 35 H 1.08997 * 109.47224 * 329.99874 * 18 17 15 36 36 H 1.09001 * 109.47158 * 59.99683 * 21 19 18 37 37 H 1.09001 * 109.47648 * 180.02562 * 21 19 18 38 38 H 1.08998 * 109.47247 * 300.00502 * 21 19 18 39 39 H 1.00900 * 110.99576 * 176.04791 * 22 19 18 40 40 H 1.00896 * 111.00008 * 299.99951 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0013 6 6 5.2000 1.8026 -1.4441 7 6 6.4147 2.6946 -1.4450 8 1 6.8508 3.0139 -0.5099 9 6 6.9692 3.1031 -2.6394 10 7 6.4378 2.7147 -3.7779 11 14 8.4753 4.2082 -2.6403 12 1 8.8755 4.5007 -1.2405 13 1 9.5908 3.5238 -3.3420 14 1 8.1563 5.4790 -3.3394 15 6 3.6142 -0.7154 -0.0004 16 6 4.8350 -1.5990 -0.0014 17 6 2.3271 -1.1330 -0.0048 18 6 1.8598 -2.5657 -0.0111 19 6 1.6985 -3.0558 1.4292 20 1 1.0317 -2.3837 1.9693 21 6 1.1062 -4.4665 1.4246 22 7 3.0110 -3.0780 2.0889 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3633 0.8902 0.5134 26 1 4.5567 2.4332 0.5128 27 1 5.6097 0.9981 0.5117 28 1 5.4332 0.8702 -1.9583 29 1 4.3801 2.3053 -1.9573 30 1 6.8277 3.0024 -4.6183 31 1 5.1300 -1.8122 1.0261 32 1 4.6072 -2.5329 -0.5152 33 1 5.6508 -1.0909 -0.5156 34 1 0.9023 -2.6333 -0.5274 35 1 2.5944 -3.1852 -0.5256 36 1 1.7730 -5.1388 0.8845 37 1 0.9908 -4.8156 2.4507 38 1 0.1325 -4.4502 0.9351 39 1 2.9230 -3.3366 3.0602 40 1 3.6476 -3.6947 1.6067 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062803233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:11 Heat of formation + Delta-G solvation = 21.245745 kcal Electronic energy + Delta-G solvation = -18671.441507 eV Core-core repulsion = 15906.634055 eV Total energy + Delta-G solvation = -2764.807452 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.15507 -37.61010 -36.24423 -34.61164 -33.12890 -31.97483 -30.10270 -29.10806 -28.50872 -26.67834 -25.57429 -23.05830 -21.73592 -20.25714 -20.15140 -18.68099 -17.04615 -16.90581 -16.67459 -16.03790 -15.53809 -15.17102 -14.69974 -14.47634 -14.34946 -14.08220 -13.90332 -13.81341 -13.58853 -13.40855 -13.04993 -12.96535 -12.86174 -12.74442 -12.54355 -12.35831 -12.25924 -12.01688 -11.83202 -11.62908 -11.41078 -11.11894 -10.65136 -9.80183 -9.36593 -8.89059 -8.26833 -6.41458 1.18935 1.39610 1.40653 1.54310 1.81997 2.00573 2.38840 3.07046 3.74920 3.84622 3.96732 4.15761 4.23590 4.33510 4.42512 4.43800 4.49131 4.59516 4.65459 4.74379 4.83107 4.85084 4.86420 5.03951 5.07759 5.10616 5.14776 5.21329 5.29404 5.34608 5.42320 5.53246 5.58500 5.68844 5.98884 6.09245 6.42333 6.52036 6.74492 6.82133 7.06872 7.29349 8.85700 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.034563 B = 0.004647 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.930371 B = 6024.039250 C = 6417.344738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.052 3.948 3 N -0.356 5.356 4 N -0.377 5.377 5 C 0.149 3.851 6 C 0.029 3.971 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.003 3.997 10 N -0.933 5.933 11 Si 0.974 3.026 12 H -0.256 1.256 13 H -0.275 1.275 14 H -0.281 1.281 15 C 0.093 3.907 16 C -0.078 4.078 17 C -0.237 4.237 18 C -0.023 4.023 19 C 0.100 3.900 20 H 0.065 0.935 21 C -0.179 4.179 22 N -0.849 5.849 23 H 0.079 0.921 24 H 0.098 0.902 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.100 0.900 28 H -0.004 1.004 29 H -0.021 1.021 30 H 0.265 0.735 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.343 0.657 40 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.774 -15.436 10.799 20.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 N -0.179 5.179 4 N -0.158 5.158 5 C 0.029 3.971 6 C -0.009 4.009 7 C -0.583 4.583 8 H 0.091 0.909 9 C -0.196 4.196 10 N -0.573 5.573 11 Si 0.798 3.202 12 H -0.180 1.180 13 H -0.200 1.200 14 H -0.206 1.206 15 C -0.035 4.035 16 C -0.136 4.136 17 C -0.248 4.248 18 C -0.062 4.062 19 C -0.012 4.012 20 H 0.083 0.917 21 C -0.238 4.238 22 N -0.379 5.379 23 H 0.098 0.902 24 H 0.117 0.883 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.118 0.882 28 H 0.014 0.986 29 H -0.003 1.003 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.156 0.844 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.560 -13.262 10.460 18.936 hybrid contribution 0.526 -0.810 -0.399 1.045 sum -8.034 -14.072 10.060 19.073 Atomic orbital electron populations 1.20206 0.84893 1.03792 1.03281 1.22828 0.98130 0.90596 0.99812 1.77169 0.87723 1.25038 1.27937 1.48750 1.04969 1.05222 1.56881 1.21733 0.82747 0.93352 0.99316 1.19192 0.95178 0.95513 0.91025 1.21501 1.12488 1.30779 0.93486 0.90939 1.26037 1.00913 0.97724 0.94900 1.70138 1.42482 1.46411 0.98227 0.85262 0.78109 0.77880 0.78958 1.17984 1.20009 1.20636 1.21355 0.98430 0.83937 0.99737 1.20436 0.91628 0.97567 1.04017 1.19699 0.90320 0.96712 1.18083 1.19923 1.01098 0.88924 0.96267 1.21308 0.90481 0.95128 0.94262 0.91684 1.22569 1.02031 0.97109 1.02102 1.58806 1.11204 1.61164 1.06763 0.90230 0.88301 0.91501 0.90703 0.88218 0.98580 1.00260 0.92586 0.88271 0.88612 0.93242 0.90206 0.91396 0.92286 0.92291 0.91606 0.84426 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.59 10.12 71.23 0.72 -0.87 16 2 C 0.05 1.84 7.22 43.10 0.31 2.15 16 3 N -0.36 -15.77 12.58 -47.39 -0.60 -16.37 16 4 N -0.38 -16.44 3.61 -334.70 -1.21 -17.65 16 5 C 0.15 6.79 6.00 86.38 0.52 7.31 16 6 C 0.03 1.61 5.30 29.85 0.16 1.77 16 7 C -0.54 -31.10 9.11 25.60 0.23 -30.87 16 8 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 9 C 0.00 0.15 5.46 84.65 0.46 0.61 16 10 N -0.93 -57.84 13.29 21.44 0.28 -57.56 16 11 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 12 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 15 C 0.09 3.38 6.84 41.41 0.28 3.66 16 16 C -0.08 -2.27 9.16 71.24 0.65 -1.62 16 17 C -0.24 -7.61 5.10 -20.14 -0.10 -7.71 16 18 C -0.02 -0.51 4.81 29.85 0.14 -0.37 16 19 C 0.10 1.76 3.34 44.91 0.15 1.91 16 20 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 21 C -0.18 -2.22 9.48 71.98 0.68 -1.54 16 22 N -0.85 -14.76 8.11 -168.67 -1.37 -16.13 16 23 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.10 1.84 7.94 -2.39 -0.02 1.82 16 25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.07 3.41 8.14 -2.39 -0.02 3.39 16 27 H 0.10 4.04 7.66 -2.39 -0.02 4.02 16 28 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16 30 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 31 H 0.10 2.47 7.91 -2.39 -0.02 2.45 16 32 H 0.10 2.26 7.14 -2.39 -0.02 2.24 16 33 H 0.05 1.63 7.72 -2.39 -0.02 1.62 16 34 H 0.08 1.54 7.94 -2.39 -0.02 1.52 16 35 H 0.07 1.40 7.14 -2.39 -0.02 1.38 16 36 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.34 4.92 9.07 -89.69 -0.81 4.11 16 40 H 0.34 5.06 8.98 -89.70 -0.81 4.26 16 Total: -1.00 -72.77 331.20 2.76 -70.01 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -0.59 Total: 17.11 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 4.21 Total: -25.55 kcal Atomic # 7 Polarization: -104.81 SS G_CDS: -2.89 Total: -107.70 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -72.77 2.76 -70.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062803233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.257 kcal (2) G-P(sol) polarization free energy of solvation -72.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds