Wall clock time and date at job start Mon Mar 30 2020 04:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39876 * 125.89952 * 2 1 4 4 C 1.35316 * 107.92035 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.12853 * 179.97438 * 4 3 2 6 6 N 1.34949 * 107.74742 * 359.97438 * 4 3 2 7 7 C 1.46499 * 126.03943 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47181 * 90.00088 * 7 6 4 9 9 H 1.09004 * 109.47621 * 305.00431 * 8 7 6 10 10 C 1.52996 * 109.47278 * 184.99997 * 8 7 6 11 11 N 1.46905 * 109.46923 * 65.00061 * 8 7 6 12 12 C 1.46901 * 110.99954 * 220.81763 * 11 8 7 13 13 H 1.08996 * 109.46885 * 32.52532 * 12 11 8 14 14 C 1.52991 * 109.47314 * 272.52451 * 12 11 8 15 15 C 1.50699 * 109.46840 * 152.52341 * 12 11 8 16 16 H 1.08004 * 119.99974 * 359.73185 * 15 12 11 17 17 C 1.37879 * 120.00164 * 179.97438 * 15 12 11 18 18 N 1.31511 * 119.99780 * 359.73228 * 17 15 12 19 19 Si 1.86800 * 120.00224 * 179.72438 * 17 15 12 20 20 H 1.48499 * 109.47048 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46837 * 120.00577 * 19 17 15 22 22 H 1.48492 * 109.47373 * 240.00451 * 19 17 15 23 23 N 1.30838 * 125.89884 * 180.30043 * 2 1 3 24 24 H 1.08999 * 109.47727 * 89.99667 * 1 2 3 25 25 H 1.08998 * 109.47322 * 210.00105 * 1 2 3 26 26 H 1.09001 * 109.47169 * 329.99741 * 1 2 3 27 27 H 1.07997 * 126.03802 * 0.02562 * 3 2 1 28 28 H 1.08999 * 109.46849 * 270.02602 * 5 4 3 29 29 H 1.09004 * 109.46629 * 30.02449 * 5 4 3 30 30 H 1.08994 * 109.47412 * 150.02214 * 5 4 3 31 31 H 1.09003 * 109.46773 * 330.00481 * 7 6 4 32 32 H 1.08999 * 109.46963 * 210.00406 * 7 6 4 33 33 H 1.09001 * 109.47238 * 174.13726 * 10 8 7 34 34 H 1.08996 * 109.47553 * 294.13408 * 10 8 7 35 35 H 1.08998 * 109.47165 * 54.13856 * 10 8 7 36 36 H 1.00907 * 110.99822 * 96.86511 * 11 8 7 37 37 H 1.08999 * 109.47244 * 62.17200 * 14 12 11 38 38 H 1.09004 * 109.47456 * 182.17640 * 14 12 11 39 39 H 1.08998 * 109.47457 * 302.17175 * 14 12 11 40 40 H 0.97001 * 120.00459 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8350 1.5989 0.0002 6 7 3.6087 -0.6341 0.0015 7 6 4.7898 -1.5008 0.0018 8 6 5.2013 -1.8015 1.4444 9 1 5.3490 -0.8654 1.9829 10 6 6.5050 -2.6023 1.4465 11 7 4.1455 -2.5832 2.1019 12 6 3.9335 -2.1257 3.4817 13 1 4.1219 -1.0539 3.5420 14 6 4.8919 -2.8653 4.4171 15 6 2.5116 -2.4098 3.8922 16 1 1.8321 -2.8789 3.1961 17 6 2.0768 -2.0662 5.1547 18 7 2.9044 -1.4954 6.0025 19 14 0.3121 -2.4113 5.6609 20 1 -0.4091 -3.0555 4.5340 21 1 0.3029 -3.3181 6.8369 22 1 -0.3600 -1.1353 6.0145 23 7 2.2741 -1.0598 -0.0056 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.9923 2.1598 0.0004 28 1 5.1293 1.8115 -1.0275 29 1 4.6075 2.5330 0.5138 30 1 5.6511 1.0911 0.5142 31 1 5.6092 -0.9985 -0.5125 32 1 4.5561 -2.4336 -0.5114 33 1 6.8532 -2.7270 2.4719 34 1 6.3308 -3.5814 1.0004 35 1 7.2599 -2.0689 0.8689 36 1 4.3568 -3.5696 2.0764 37 1 5.9204 -2.6293 4.1443 38 1 4.7082 -2.5543 5.4456 39 1 4.7298 -3.9395 4.3282 40 1 2.5985 -1.2533 6.8906 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067406390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:46 Heat of formation + Delta-G solvation = 66.793422 kcal Electronic energy + Delta-G solvation = -19317.377392 eV Core-core repulsion = 16554.545035 eV Total energy + Delta-G solvation = -2762.832356 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.65699 -37.05573 -33.98925 -32.68411 -31.41219 -30.45659 -28.40324 -27.01642 -26.54524 -25.03593 -24.71397 -20.79304 -20.32357 -19.67430 -18.78604 -16.44143 -15.93104 -15.03364 -14.83043 -14.41591 -13.84846 -13.38713 -13.34571 -13.27688 -12.98545 -12.62894 -12.41360 -12.24244 -12.16076 -12.02870 -11.77056 -11.41687 -11.39076 -11.18594 -10.88070 -10.77187 -10.67766 -10.32329 -10.10615 -9.80228 -9.75313 -8.91395 -8.38534 -8.28593 -7.87702 -7.14251 -5.90735 -3.91902 2.48914 3.12538 3.36542 3.39666 3.43881 3.51087 4.50609 4.82924 5.00785 5.20178 5.29040 5.35019 5.41100 5.44251 5.60222 5.62004 5.64799 5.76911 5.78579 5.97324 6.01134 6.08068 6.15224 6.26872 6.32678 6.34085 6.44879 6.73487 6.74529 6.87096 7.11973 7.31923 7.37665 7.67410 7.78559 7.98377 8.33987 8.45975 8.60771 8.68557 9.16356 9.72680 11.16391 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.008827 C = 0.006513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.116977 B = 3171.309317 C = 4298.317370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.054 3.946 3 C -0.276 4.276 4 C 0.069 3.931 5 C -0.087 4.087 6 N -0.343 5.343 7 C 0.145 3.855 8 C 0.065 3.935 9 H 0.070 0.930 10 C -0.174 4.174 11 N -0.665 5.665 12 C 0.219 3.781 13 H 0.027 0.973 14 C -0.170 4.170 15 C -0.481 4.481 16 H 0.063 0.937 17 C 0.052 3.948 18 N -0.901 5.901 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.287 1.287 22 H -0.286 1.286 23 N -0.251 5.251 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.135 0.865 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.326 0.674 37 H 0.005 0.995 38 H 0.089 0.911 39 H 0.026 0.974 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.808 3.955 -11.999 13.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C -0.306 4.306 4 C -0.059 4.059 5 C -0.146 4.146 6 N -0.124 5.124 7 C 0.022 3.978 8 C -0.047 4.047 9 H 0.088 0.912 10 C -0.233 4.233 11 N -0.295 5.295 12 C 0.111 3.889 13 H 0.044 0.956 14 C -0.229 4.229 15 C -0.520 4.520 16 H 0.081 0.919 17 C -0.147 4.147 18 N -0.542 5.542 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.214 1.214 22 H -0.212 1.212 23 N -0.072 5.072 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.153 0.847 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.143 0.857 37 H 0.024 0.976 38 H 0.107 0.893 39 H 0.045 0.955 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.435 3.039 -12.083 13.225 hybrid contribution -0.005 0.400 1.063 1.136 sum 4.429 3.440 -11.020 12.365 Atomic orbital electron populations 1.20054 0.87628 1.03124 1.01698 1.22149 0.96612 0.91043 1.01408 1.20923 0.91197 0.99183 1.19251 1.20906 0.96878 0.85132 1.02974 1.20363 0.93576 0.98342 1.02312 1.48242 1.05386 1.03193 1.55592 1.21798 0.83288 0.94238 0.98490 1.21971 0.90270 0.98392 0.94075 0.91168 1.22487 0.97852 1.00400 1.02586 1.60743 1.41400 1.05969 1.21349 1.19191 0.94725 0.94247 0.80720 0.95556 1.22526 0.95563 0.98812 1.06049 1.21193 0.95552 1.37867 0.97391 0.91915 1.24931 0.97468 0.95661 0.96647 1.69884 1.34553 1.43091 1.06700 0.86491 0.85236 0.77758 0.78263 1.19683 1.21374 1.21234 1.77443 0.85940 1.21731 1.22135 0.91584 0.90985 0.91143 0.84711 0.91006 0.90142 0.91453 0.90230 0.89249 0.91701 0.92370 0.92929 0.85663 0.97577 0.89262 0.95486 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.45 36.00 0.38 -0.64 16 2 C 0.05 1.03 7.22 -82.41 -0.59 0.44 16 3 C -0.28 -4.79 10.65 -40.01 -0.43 -5.22 16 4 C 0.07 1.15 6.93 -82.27 -0.57 0.58 16 5 C -0.09 -1.05 9.90 36.00 0.36 -0.70 16 6 N -0.34 -6.28 3.54 -57.15 -0.20 -6.48 16 7 C 0.14 2.22 5.69 -4.05 -0.02 2.19 16 8 C 0.07 1.12 2.90 -67.71 -0.20 0.92 16 9 H 0.07 1.35 7.16 -51.93 -0.37 0.97 16 10 C -0.17 -2.38 9.11 37.16 0.34 -2.04 16 11 N -0.67 -14.17 6.01 -100.96 -0.61 -14.78 16 12 C 0.22 5.58 2.56 -68.87 -0.18 5.40 16 13 H 0.03 0.76 7.29 -51.93 -0.38 0.38 16 14 C -0.17 -4.11 8.94 37.15 0.33 -3.78 16 15 C -0.48 -13.80 8.84 -34.44 -0.30 -14.11 16 16 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 17 C 0.05 1.50 5.30 -17.82 -0.09 1.41 16 18 N -0.90 -26.52 11.29 55.43 0.63 -25.89 16 19 Si 0.89 22.44 29.54 -169.99 -5.02 17.42 16 20 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 N -0.25 -5.25 12.58 33.67 0.42 -4.83 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.78 7.72 -51.93 -0.40 0.38 16 31 H 0.08 0.94 7.66 -51.93 -0.40 0.54 16 32 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.06 0.97 6.33 -51.93 -0.33 0.64 16 34 H 0.06 0.74 8.01 -51.93 -0.42 0.32 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.33 6.63 7.84 -39.29 -0.31 6.32 16 37 H 0.01 0.12 6.32 -51.93 -0.33 -0.21 16 38 H 0.09 2.42 6.00 -51.93 -0.31 2.11 16 39 H 0.03 0.62 8.09 -51.93 -0.42 0.20 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 326.37 15.07 4.92 4.92 Total: -1.00 -32.47 326.37 -7.43 -39.90 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -6.59 Total: 5.27 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -0.98 Total: -15.53 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.24 Total: -51.98 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.47 -7.43 -39.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067406390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.696 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds