Wall clock time and date at job start Mon Mar 30 2020 04:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30503 * 125.64646 * 2 1 4 4 C 1.34130 * 109.25437 * 180.14481 * 3 2 1 5 5 C 1.34671 * 108.02156 * 359.61623 * 4 3 2 6 6 N 1.35037 * 125.65292 * 179.72058 * 2 1 3 7 7 C 1.46503 * 126.39776 * 0.02562 * 6 2 1 8 8 C 1.53000 * 109.47186 * 279.64974 * 7 6 2 9 9 H 1.09003 * 109.46492 * 54.40664 * 8 7 6 10 10 C 1.52995 * 109.47312 * 294.40748 * 8 7 6 11 11 C 1.52995 * 109.47079 * 174.40574 * 8 7 6 12 12 N 1.46896 * 109.47289 * 185.00607 * 11 8 7 13 13 C 1.46905 * 111.00067 * 180.02562 * 12 11 8 14 14 H 1.08996 * 109.47056 * 324.99161 * 13 12 11 15 15 C 1.52997 * 109.47229 * 84.99569 * 13 12 11 16 16 C 1.50698 * 109.46679 * 204.99514 * 13 12 11 17 17 H 1.07999 * 120.00678 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99631 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00219 * 359.97438 * 18 16 13 20 20 Si 1.86804 * 120.00078 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.47140 * 59.99585 * 20 18 16 22 22 H 1.48497 * 109.47360 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46907 * 299.99760 * 20 18 16 24 24 H 1.08997 * 109.47278 * 265.12414 * 1 2 3 25 25 H 1.09001 * 109.47301 * 25.12803 * 1 2 3 26 26 H 1.09007 * 109.47037 * 145.12528 * 1 2 3 27 27 H 1.07997 * 125.99179 * 179.88312 * 4 3 2 28 28 H 1.07997 * 126.59529 * 180.24850 * 5 4 3 29 29 H 1.09003 * 109.46860 * 39.65037 * 7 6 2 30 30 H 1.08994 * 109.47146 * 159.64940 * 7 6 2 31 31 H 1.08995 * 109.47083 * 294.52877 * 10 8 7 32 32 H 1.09003 * 109.46810 * 54.53198 * 10 8 7 33 33 H 1.09003 * 109.46834 * 174.52623 * 10 8 7 34 34 H 1.09007 * 109.47360 * 305.00208 * 11 8 7 35 35 H 1.09003 * 109.47364 * 65.00207 * 11 8 7 36 36 H 1.00903 * 110.99614 * 303.94811 * 12 11 8 37 37 H 1.08994 * 109.47529 * 300.00053 * 15 13 12 38 38 H 1.09002 * 109.47268 * 60.00215 * 15 13 12 39 39 H 1.09001 * 109.47521 * 179.97438 * 15 13 12 40 40 H 0.96999 * 120.00142 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 -0.0032 5 6 3.5926 -0.6642 0.0033 6 7 2.2940 -1.0972 0.0054 7 6 1.8426 -2.4910 0.0116 8 6 1.4548 -2.8951 1.4354 9 1 0.7210 -2.1900 1.8260 10 6 2.6989 -2.8821 2.3260 11 6 0.8531 -4.3016 1.4204 12 7 0.3715 -4.6427 2.7656 13 6 -0.2137 -5.9899 2.7894 14 1 -0.7195 -6.1831 1.8435 15 6 0.8950 -7.0239 2.9955 16 6 -1.2067 -6.0862 3.9189 17 1 -1.3850 -5.2323 4.5556 18 6 -1.8877 -7.2646 4.1394 19 7 -1.6710 -8.3044 3.3638 20 14 -3.1191 -7.3839 5.5390 21 1 -4.1949 -6.3799 5.3387 22 1 -3.7106 -8.7458 5.5632 23 1 -2.4304 -7.1210 6.8281 24 1 -0.3634 -0.0873 1.0239 25 1 -0.3634 0.9304 -0.4364 26 1 -0.3633 -0.8432 -0.5876 27 1 4.4097 1.3412 -0.0058 28 1 4.4776 -1.2831 0.0067 29 1 0.9781 -2.5957 -0.6440 30 1 2.6473 -3.1351 -0.3425 31 1 3.3919 -3.6547 1.9933 32 1 3.1825 -1.9074 2.2603 33 1 2.4083 -3.0746 3.3588 34 1 0.0204 -4.3332 0.7176 35 1 1.6143 -5.0193 1.1142 36 1 1.1112 -4.5580 3.4467 37 1 1.6133 -6.9543 2.1787 38 1 1.4008 -6.8308 3.9416 39 1 0.4608 -8.0236 3.0137 40 1 -2.1498 -9.1335 3.5192 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067406501.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:16 Heat of formation + Delta-G solvation = 46.165692 kcal Electronic energy + Delta-G solvation = -18490.670230 eV Core-core repulsion = 15726.943388 eV Total energy + Delta-G solvation = -2763.726842 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.12319 -37.42429 -35.10792 -32.86740 -31.74471 -31.37610 -28.16158 -27.26089 -26.51583 -25.21916 -24.19801 -21.38306 -20.57483 -20.13776 -19.42437 -17.08736 -16.38313 -15.72865 -15.32322 -14.77232 -14.47486 -13.98637 -13.77748 -13.75835 -13.09818 -12.97498 -12.79270 -12.62019 -12.41195 -12.34135 -11.90841 -11.74781 -11.32331 -11.04823 -10.97286 -10.81203 -10.67087 -10.41074 -10.18338 -9.97244 -9.90202 -9.51538 -9.05198 -8.39675 -8.33447 -7.31826 -6.02291 -4.05807 2.05005 2.77603 3.15154 3.32173 3.36208 3.39621 4.39856 4.48634 4.53802 4.68912 4.80371 5.05275 5.18164 5.26412 5.29402 5.37225 5.43521 5.46956 5.53778 5.65246 5.76510 5.85059 5.94144 5.97788 6.13554 6.26376 6.34817 6.42852 6.62450 6.76382 6.77649 7.03217 7.19238 7.30026 7.68293 7.83617 8.12005 8.22043 8.46173 8.55944 9.01093 9.59828 11.04739 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.038785 B = 0.004046 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.755411 B = 6918.947924 C = 7250.846557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.208 3.792 3 N -0.499 5.499 4 C -0.035 4.035 5 C -0.058 4.058 6 N -0.447 5.447 7 C 0.106 3.894 8 C -0.104 4.104 9 H 0.086 0.914 10 C -0.148 4.148 11 C 0.068 3.932 12 N -0.682 5.682 13 C 0.211 3.789 14 H 0.033 0.967 15 C -0.169 4.169 16 C -0.497 4.497 17 H 0.062 0.938 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.278 1.278 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.166 0.834 28 H 0.170 0.830 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.021 0.979 36 H 0.326 0.674 37 H 0.004 0.996 38 H 0.027 0.973 39 H 0.089 0.911 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.631 10.932 -7.370 15.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.055 4.055 3 N -0.218 5.218 4 C -0.183 4.183 5 C -0.191 4.191 6 N -0.129 5.129 7 C -0.017 4.017 8 C -0.123 4.123 9 H 0.104 0.896 10 C -0.206 4.206 11 C -0.062 4.062 12 N -0.313 5.313 13 C 0.104 3.896 14 H 0.051 0.949 15 C -0.228 4.228 16 C -0.535 4.535 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.726 3.274 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.204 1.204 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.093 0.907 27 H 0.183 0.817 28 H 0.187 0.813 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.143 0.857 37 H 0.023 0.977 38 H 0.046 0.954 39 H 0.108 0.892 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.619 11.701 -7.482 15.842 hybrid contribution 0.687 -1.710 0.690 1.967 sum 8.306 9.992 -6.792 14.661 Atomic orbital electron populations 1.20211 0.85038 1.03892 1.03730 1.23287 0.95743 0.81403 1.05034 1.70236 1.02235 1.28463 1.20880 1.22220 0.94789 0.92768 1.08505 1.22647 0.87205 0.96752 1.12515 1.45451 1.06336 1.07561 1.53522 1.22029 1.01577 0.78758 0.99292 1.21546 0.98450 0.99326 0.93015 0.89600 1.21845 0.96929 1.01219 1.00594 1.21827 0.97634 0.92385 0.94389 1.60837 1.35210 1.32040 1.03171 1.19170 0.91717 0.81018 0.97722 0.94899 1.22430 0.97885 1.05910 0.96571 1.21114 1.21241 0.97351 1.13835 0.92003 1.24950 0.97196 0.95723 0.96624 1.69868 1.42551 1.02624 1.38750 0.86563 0.81436 0.76906 0.82488 1.20247 1.21448 1.20368 0.89927 0.89446 0.90739 0.81704 0.81295 0.88967 0.89059 0.92978 0.92898 0.91568 0.91542 0.96136 0.85713 0.97714 0.95388 0.89234 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.14 36.00 0.36 -0.36 16 2 C 0.21 2.70 7.89 -155.42 -1.23 1.47 16 3 N -0.50 -7.28 11.25 -10.82 -0.12 -7.41 16 4 C -0.03 -0.43 11.87 -17.81 -0.21 -0.64 16 5 C -0.06 -0.65 10.45 -16.56 -0.17 -0.82 16 6 N -0.45 -5.24 2.40 -113.91 -0.27 -5.52 16 7 C 0.11 1.12 5.24 -4.04 -0.02 1.09 16 8 C -0.10 -1.31 2.79 -90.62 -0.25 -1.57 16 9 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 10 C -0.15 -1.83 8.75 37.16 0.33 -1.51 16 11 C 0.07 1.08 4.94 -3.83 -0.02 1.06 16 12 N -0.68 -13.58 6.23 -107.95 -0.67 -14.26 16 13 C 0.21 5.13 2.57 -68.86 -0.18 4.95 16 14 H 0.03 0.88 7.80 -51.93 -0.41 0.47 16 15 C -0.17 -3.93 8.94 37.16 0.33 -3.60 16 16 C -0.50 -13.48 8.84 -34.44 -0.30 -13.78 16 17 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 18 C 0.06 1.52 5.30 -17.82 -0.09 1.43 16 19 N -0.90 -25.29 11.32 55.43 0.63 -24.66 16 20 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.66 7.44 -51.93 -0.39 0.27 16 27 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.09 0.88 7.47 -51.93 -0.39 0.49 16 30 H 0.09 0.85 8.12 -51.93 -0.42 0.42 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.64 6.70 -51.93 -0.35 0.30 16 33 H 0.07 0.89 6.93 -51.93 -0.36 0.53 16 34 H 0.07 1.07 8.06 -51.93 -0.42 0.65 16 35 H 0.02 0.32 7.44 -51.93 -0.39 -0.06 16 36 H 0.33 6.23 6.84 -39.29 -0.27 5.96 16 37 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 38 H 0.03 0.63 8.13 -51.93 -0.42 0.20 16 39 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 323.04 15.07 4.87 4.87 Total: -1.00 -30.09 323.04 -8.64 -38.73 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.59 Total: 4.31 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -1.46 Total: -12.27 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.44 Total: -51.84 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.09 -8.64 -38.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067406501.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.893 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds