Wall clock time and date at job start Mon Mar 30 2020 04:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47139 * 2 1 4 4 C 1.52993 * 109.46760 * 119.99932 * 2 1 3 5 5 N 1.46902 * 109.46940 * 175.00201 * 4 2 1 6 6 C 1.46900 * 111.00192 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47189 * 180.02562 * 6 5 4 8 8 N 1.30503 * 125.64757 * 270.16854 * 7 6 5 9 9 C 1.34132 * 109.25579 * 180.29064 * 8 7 6 10 10 C 1.34669 * 108.01768 * 359.73289 * 9 8 7 11 11 N 1.35042 * 125.65478 * 89.99961 * 7 6 5 12 12 C 1.46500 * 126.39313 * 359.97438 * 11 7 6 13 13 C 1.52997 * 109.47473 * 84.71557 * 12 11 7 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47432 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46890 * 120.00210 * 18 16 14 21 21 H 1.48501 * 109.47062 * 240.00257 * 18 16 14 22 22 H 1.08995 * 109.47276 * 300.00332 * 1 2 3 23 23 H 1.09004 * 109.46840 * 60.00064 * 1 2 3 24 24 H 1.08999 * 109.47548 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46831 * 239.99953 * 2 1 3 26 26 H 1.08998 * 109.46706 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47010 * 300.00284 * 3 2 1 28 28 H 1.09004 * 109.46768 * 59.99757 * 3 2 1 29 29 H 1.08998 * 109.47058 * 55.00377 * 4 2 1 30 30 H 1.09005 * 109.47473 * 295.00199 * 4 2 1 31 31 H 1.00907 * 110.99689 * 303.94970 * 5 4 2 32 32 H 1.08998 * 109.47218 * 59.99679 * 6 5 4 33 33 H 1.08999 * 109.46966 * 300.00003 * 6 5 4 34 34 H 1.07998 * 125.98893 * 179.72468 * 9 8 7 35 35 H 1.07997 * 126.59117 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.47129 * 324.71300 * 12 11 7 37 37 H 1.08998 * 109.46845 * 204.72107 * 12 11 7 38 38 H 1.09002 * 109.47153 * 59.99757 * 13 12 11 39 39 H 1.09001 * 109.46832 * 299.99948 * 13 12 11 40 40 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5040 -0.8266 1.1905 6 6 4.0302 -1.5158 2.3762 7 6 5.5316 -1.6043 2.2808 8 7 6.2026 -2.5774 1.7278 9 6 7.5157 -2.3246 1.8322 10 6 7.6638 -1.1473 2.4690 11 7 6.4055 -0.6881 2.7505 12 6 6.0695 0.5609 3.4386 13 6 5.8626 0.2826 4.9287 14 6 5.5176 1.5676 5.6365 15 1 5.4520 2.4903 5.0792 16 6 5.2847 1.5650 6.9955 17 7 5.3640 0.4413 7.6741 18 14 4.8563 3.1576 7.8726 19 1 4.8300 4.2718 6.8912 20 1 3.5211 3.0282 8.5098 21 1 5.8767 3.4390 8.9142 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6053 -1.7198 1.2951 30 1 1.7515 -0.1583 2.1370 31 1 3.7995 -1.2884 0.3433 32 1 3.6094 -2.5199 2.4295 33 1 3.7556 -0.9588 3.2719 34 1 8.3141 -2.9548 1.4693 35 1 8.5963 -0.6593 2.7114 36 1 5.1537 0.9738 3.0154 37 1 6.8827 1.2755 3.3118 38 1 6.7784 -0.1303 5.3518 39 1 5.0494 -0.4320 5.0554 40 1 5.2005 0.4396 8.6302 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085584520.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:52 Heat of formation + Delta-G solvation = 33.746578 kcal Electronic energy + Delta-G solvation = -18449.646514 eV Core-core repulsion = 15685.381139 eV Total energy + Delta-G solvation = -2764.265375 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.53284 -37.32793 -34.64178 -34.00827 -32.59528 -29.73119 -29.24328 -27.11035 -26.16805 -24.95831 -23.42697 -21.63144 -20.75984 -20.32961 -18.97564 -16.91216 -16.06346 -15.57219 -15.28286 -14.95466 -14.56981 -14.23929 -14.00896 -13.67276 -13.28608 -12.84377 -12.79676 -12.50804 -12.34818 -12.20214 -11.89096 -11.69478 -11.47214 -11.08475 -10.95507 -10.82426 -10.80828 -10.63041 -10.27796 -10.09104 -9.54673 -9.34004 -8.79795 -8.53010 -8.37281 -7.87043 -6.16631 -4.22115 2.58945 3.22009 3.29749 3.32958 3.46964 3.55671 4.33447 4.37481 4.80380 4.90391 4.95802 5.17425 5.19802 5.31111 5.49541 5.53167 5.60462 5.65546 5.68355 5.78826 5.79898 5.90353 5.97489 5.99480 6.08597 6.16575 6.23168 6.31091 6.44493 6.46691 6.88831 7.03869 7.23482 7.40952 7.45101 7.50990 7.70470 7.85864 8.15682 8.59648 8.83863 9.43580 10.94449 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.013489 B = 0.006421 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.235699 B = 4359.654407 C = 5925.337734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.140 4.140 4 C 0.062 3.938 5 N -0.682 5.682 6 C 0.145 3.855 7 C 0.205 3.795 8 N -0.503 5.503 9 C -0.045 4.045 10 C -0.052 4.052 11 N -0.427 5.427 12 C 0.102 3.898 13 C 0.015 3.985 14 C -0.527 4.527 15 H 0.060 0.940 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.896 3.104 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.283 1.283 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.029 0.971 30 H 0.077 0.923 31 H 0.343 0.657 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.724 -1.110 -13.124 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.197 4.197 4 C -0.067 4.067 5 N -0.314 5.314 6 C 0.015 3.985 7 C -0.057 4.057 8 N -0.223 5.223 9 C -0.194 4.194 10 C -0.188 4.188 11 N -0.106 5.106 12 C -0.019 4.019 13 C -0.023 4.023 14 C -0.565 4.565 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.528 5.528 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.209 1.209 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.161 0.839 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.179 0.821 35 H 0.185 0.815 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.040 -1.077 -12.960 13.947 hybrid contribution 0.117 0.582 0.911 1.088 sum -4.923 -0.495 -12.049 13.025 Atomic orbital electron populations 1.21819 0.95224 1.01525 1.01896 1.21087 0.95155 0.97305 0.97607 1.21738 1.02279 0.94843 1.00830 1.22057 0.87099 0.98625 0.98913 1.60447 1.09854 1.56471 1.04628 1.20150 0.85300 0.98240 0.94841 1.22729 0.93801 0.87886 1.01328 1.70108 1.04520 1.25567 1.22111 1.22082 0.93682 0.97176 1.06469 1.22681 0.89024 0.99486 1.07641 1.45705 1.05780 1.18422 1.40654 1.22406 1.01749 0.81626 0.96143 1.19429 0.98019 0.98034 0.86827 1.21030 1.48660 0.93752 0.93085 0.92177 1.24998 0.95067 0.96455 0.97562 1.69980 1.48796 1.25909 1.08068 0.86471 0.78137 0.83356 0.79685 1.19566 1.20842 1.20867 0.92459 0.92680 0.92920 0.91582 0.91463 0.93703 0.92807 0.95238 0.90501 0.83948 0.92591 0.88612 0.82070 0.81527 0.89422 0.90332 0.95988 0.95923 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.19 37.16 0.34 -0.97 16 2 C -0.09 -0.96 3.06 -90.62 -0.28 -1.23 16 3 C -0.14 -1.54 9.08 37.16 0.34 -1.20 16 4 C 0.06 0.74 5.07 -3.83 -0.02 0.72 16 5 N -0.68 -9.47 5.94 -115.06 -0.68 -10.16 16 6 C 0.14 2.35 5.84 -4.98 -0.03 2.32 16 7 C 0.21 3.84 7.42 -155.41 -1.15 2.68 16 8 N -0.50 -9.58 11.25 -10.82 -0.12 -9.70 16 9 C -0.04 -0.77 11.87 -17.81 -0.21 -0.98 16 10 C -0.05 -0.91 11.58 -16.56 -0.19 -1.10 16 11 N -0.43 -8.11 2.75 -113.91 -0.31 -8.43 16 12 C 0.10 2.02 5.61 -4.04 -0.02 2.00 16 13 C 0.01 0.36 5.30 -27.88 -0.15 0.21 16 14 C -0.53 -14.03 9.11 -34.44 -0.31 -14.34 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 18 Si 0.90 20.79 29.54 -169.99 -5.02 15.76 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.34 4.64 8.72 -39.29 -0.34 4.29 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.10 1.69 7.33 -51.93 -0.38 1.31 16 34 H 0.16 2.26 8.06 -52.49 -0.42 1.84 16 35 H 0.17 2.43 8.06 -52.49 -0.42 2.01 16 36 H 0.09 1.71 7.94 -51.93 -0.41 1.29 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.02 0.60 7.63 -51.93 -0.40 0.20 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 333.78 15.07 5.03 5.03 Total: -1.00 -29.64 333.78 -9.13 -38.77 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.97 Total: 4.16 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -1.78 Total: -10.30 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.38 Total: -53.42 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.64 -9.13 -38.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085584520.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.517 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds