Wall clock time and date at job start Mon Mar 30 2020 04:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47139 * 2 1 4 4 C 1.52993 * 109.46760 * 119.99932 * 2 1 3 5 5 N 1.46902 * 109.46940 * 175.00201 * 4 2 1 6 6 C 1.46900 * 111.00192 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47189 * 180.02562 * 6 5 4 8 8 N 1.30503 * 125.64757 * 270.16854 * 7 6 5 9 9 C 1.34132 * 109.25579 * 180.29064 * 8 7 6 10 10 C 1.34669 * 108.01768 * 359.73289 * 9 8 7 11 11 N 1.35042 * 125.65478 * 89.99961 * 7 6 5 12 12 C 1.46500 * 126.39313 * 359.97438 * 11 7 6 13 13 C 1.52997 * 109.47473 * 84.71557 * 12 11 7 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47432 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46890 * 120.00210 * 18 16 14 21 21 H 1.48501 * 109.47062 * 240.00257 * 18 16 14 22 22 H 1.08995 * 109.47276 * 300.00332 * 1 2 3 23 23 H 1.09004 * 109.46840 * 60.00064 * 1 2 3 24 24 H 1.08999 * 109.47548 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46831 * 239.99953 * 2 1 3 26 26 H 1.08998 * 109.46706 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47010 * 300.00284 * 3 2 1 28 28 H 1.09004 * 109.46768 * 59.99757 * 3 2 1 29 29 H 1.08998 * 109.47058 * 55.00377 * 4 2 1 30 30 H 1.09005 * 109.47473 * 295.00199 * 4 2 1 31 31 H 1.00907 * 110.99689 * 303.94970 * 5 4 2 32 32 H 1.08998 * 109.47218 * 59.99679 * 6 5 4 33 33 H 1.08999 * 109.46966 * 300.00003 * 6 5 4 34 34 H 1.07998 * 125.98893 * 179.72468 * 9 8 7 35 35 H 1.07997 * 126.59117 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.47129 * 324.71300 * 12 11 7 37 37 H 1.08998 * 109.46845 * 204.72107 * 12 11 7 38 38 H 1.09002 * 109.47153 * 59.99757 * 13 12 11 39 39 H 1.09001 * 109.46832 * 299.99948 * 13 12 11 40 40 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5040 -0.8266 1.1905 6 6 4.0302 -1.5158 2.3762 7 6 5.5316 -1.6043 2.2808 8 7 6.2026 -2.5774 1.7278 9 6 7.5157 -2.3246 1.8322 10 6 7.6638 -1.1473 2.4690 11 7 6.4055 -0.6881 2.7505 12 6 6.0695 0.5609 3.4386 13 6 5.8626 0.2826 4.9287 14 6 5.5176 1.5676 5.6365 15 1 5.4520 2.4903 5.0792 16 6 5.2847 1.5650 6.9955 17 7 5.3640 0.4413 7.6741 18 14 4.8563 3.1576 7.8726 19 1 4.8300 4.2718 6.8912 20 1 3.5211 3.0282 8.5098 21 1 5.8767 3.4390 8.9142 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6053 -1.7198 1.2951 30 1 1.7515 -0.1583 2.1370 31 1 3.7995 -1.2884 0.3433 32 1 3.6094 -2.5199 2.4295 33 1 3.7556 -0.9588 3.2719 34 1 8.3141 -2.9548 1.4693 35 1 8.5963 -0.6593 2.7114 36 1 5.1537 0.9738 3.0154 37 1 6.8827 1.2755 3.3118 38 1 6.7784 -0.1303 5.3518 39 1 5.0494 -0.4320 5.0554 40 1 5.2005 0.4396 8.6302 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085584520.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:52 Heat of formation + Delta-G solvation = 16.732607 kcal Electronic energy + Delta-G solvation = -18450.384295 eV Core-core repulsion = 15685.381139 eV Total energy + Delta-G solvation = -2765.003156 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.95564 -38.32853 -36.40571 -35.06587 -34.48962 -31.30902 -30.76409 -27.92147 -27.42866 -26.76901 -24.57759 -23.46182 -22.18004 -21.29110 -20.36494 -18.76533 -17.66210 -16.81702 -16.59779 -16.40295 -15.95926 -15.53250 -15.33980 -14.97705 -14.56665 -14.41142 -14.17753 -13.97349 -13.61224 -13.33459 -13.03628 -13.01704 -12.90298 -12.71253 -12.60320 -12.12929 -11.96473 -11.80621 -11.70099 -11.49361 -11.43275 -10.94174 -10.63662 -10.37987 -9.52507 -9.22392 -8.26443 -6.39405 1.17273 1.40374 1.41491 1.54222 2.01664 2.17191 2.40050 3.08681 3.19280 3.63173 3.85581 3.97177 4.02093 4.09585 4.28936 4.37915 4.45937 4.46953 4.65883 4.68236 4.69281 4.76524 4.81809 4.87551 4.89519 5.09157 5.14305 5.28213 5.28970 5.34885 5.47291 5.54878 5.61360 5.69146 5.89146 5.94703 6.03715 6.32694 6.39179 6.76308 7.18151 7.31498 8.85834 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.013489 B = 0.006421 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.235699 B = 4359.654407 C = 5925.337734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.137 4.137 4 C 0.063 3.937 5 N -0.681 5.681 6 C 0.152 3.848 7 C 0.193 3.807 8 N -0.520 5.520 9 C -0.050 4.050 10 C -0.062 4.062 11 N -0.439 5.439 12 C 0.122 3.878 13 C 0.026 3.974 14 C -0.539 4.539 15 H 0.071 0.929 16 C 0.005 3.995 17 N -0.931 5.931 18 Si 0.967 3.033 19 H -0.257 1.257 20 H -0.280 1.280 21 H -0.280 1.280 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.346 0.654 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.193 0.807 35 H 0.193 0.807 36 H 0.091 0.909 37 H 0.094 0.906 38 H -0.009 1.009 39 H -0.006 1.006 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.963 -0.097 -14.231 15.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.194 4.194 4 C -0.066 4.066 5 N -0.314 5.314 6 C 0.022 3.978 7 C -0.070 4.070 8 N -0.241 5.241 9 C -0.198 4.198 10 C -0.196 4.196 11 N -0.119 5.119 12 C 0.000 4.000 13 C -0.012 4.012 14 C -0.578 4.578 15 H 0.089 0.911 16 C -0.193 4.193 17 N -0.571 5.571 18 Si 0.791 3.209 19 H -0.181 1.181 20 H -0.206 1.206 21 H -0.206 1.206 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.165 0.835 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.210 0.790 35 H 0.210 0.790 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.010 0.990 39 H 0.012 0.988 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.272 -0.068 -14.097 15.051 hybrid contribution 0.218 0.196 1.224 1.259 sum -5.054 0.127 -12.873 13.830 Atomic orbital electron populations 1.21791 0.93873 1.02151 1.02318 1.21062 0.96186 0.96564 0.96823 1.21706 1.01122 0.95471 1.01137 1.22110 0.85889 0.99184 0.99421 1.60419 1.11116 1.55993 1.03823 1.20026 0.84426 0.98337 0.95056 1.23162 0.94696 0.87850 1.01287 1.70129 1.05553 1.25717 1.22686 1.22652 0.93747 0.97461 1.05924 1.23229 0.89315 0.99789 1.07299 1.45713 1.06664 1.18335 1.41159 1.22019 1.02606 0.82396 0.92960 1.19207 0.95279 0.96653 0.90043 1.21455 1.47997 0.94702 0.93598 0.91068 1.25943 0.94895 0.99903 0.98584 1.70116 1.50141 1.28405 1.08445 0.85363 0.77739 0.79265 0.78487 1.18066 1.20551 1.20557 0.92802 0.91507 0.92221 0.90894 0.93158 0.92251 0.93637 0.94364 0.91711 0.83524 0.92147 0.90630 0.79045 0.79010 0.89028 0.88762 0.99042 0.98792 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.19 71.98 0.66 -1.64 16 2 C -0.09 -1.69 3.06 -10.79 -0.03 -1.72 16 3 C -0.14 -2.88 9.08 71.98 0.65 -2.23 16 4 C 0.06 1.46 5.07 86.30 0.44 1.90 16 5 N -0.68 -18.73 5.94 -517.94 -3.08 -21.81 16 6 C 0.15 5.01 5.84 85.56 0.50 5.51 16 7 C 0.19 7.19 7.42 138.13 1.02 8.21 16 8 N -0.52 -19.44 11.25 -188.13 -2.12 -21.56 16 9 C -0.05 -1.63 11.87 83.52 0.99 -0.64 16 10 C -0.06 -2.06 11.58 83.09 0.96 -1.10 16 11 N -0.44 -16.55 2.75 -514.30 -1.41 -17.97 16 12 C 0.12 4.82 5.61 86.38 0.48 5.30 16 13 C 0.03 1.31 5.30 29.85 0.16 1.47 16 14 C -0.54 -28.79 9.11 25.60 0.23 -28.55 16 15 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 16 C 0.01 0.30 5.46 84.66 0.46 0.76 16 17 N -0.93 -55.22 13.29 21.45 0.28 -54.93 16 18 Si 0.97 42.38 29.54 68.60 2.03 44.41 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 22 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 1.22 7.75 -2.39 -0.02 1.20 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.04 1.01 8.14 -2.38 -0.02 1.00 16 29 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 1.66 8.14 -2.38 -0.02 1.65 16 31 H 0.35 9.13 8.72 -89.69 -0.78 8.35 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 2.78 7.33 -2.39 -0.02 2.76 16 34 H 0.19 4.90 8.06 -2.91 -0.02 4.88 16 35 H 0.19 5.23 8.06 -2.91 -0.02 5.21 16 36 H 0.09 3.55 7.94 -2.39 -0.02 3.53 16 37 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 38 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 39 H -0.01 -0.35 7.63 -2.39 -0.02 -0.37 16 40 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -63.34 333.78 2.45 -60.89 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.21 Total: 23.71 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 6.54 Total: -12.74 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -6.33 Total: -116.27 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -63.34 2.45 -60.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085584520.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.627 kcal (2) G-P(sol) polarization free energy of solvation -63.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds