Wall clock time and date at job start Mon Mar 30 2020 04:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.46990 * 2 1 4 4 C 1.47197 * 109.47344 * 240.00019 * 2 1 3 5 5 N 2.60795 * 109.47376 * 239.99932 * 2 1 3 6 6 C 1.53002 * 109.47313 * 119.99795 * 2 1 3 7 7 C 1.53003 * 109.47070 * 300.00109 * 6 2 1 8 8 N 1.46899 * 109.47336 * 179.97438 * 7 6 2 9 9 C 1.46895 * 110.99989 * 170.00208 * 8 7 6 10 10 C 1.53241 * 109.33538 * 187.25118 * 9 8 7 11 11 N 1.47082 * 108.52509 * 306.16899 * 10 9 8 12 12 C 1.36935 * 120.87800 * 231.18634 * 11 10 9 13 13 H 1.07994 * 120.00243 * 27.12925 * 12 11 10 14 14 C 1.38815 * 119.99552 * 206.84012 * 12 11 10 15 15 N 1.31614 * 119.99986 * 17.18837 * 14 12 11 16 16 Si 1.86797 * 120.00057 * 197.17547 * 14 12 11 17 17 H 1.48508 * 109.47149 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47196 * 120.00464 * 16 14 12 19 19 H 1.48497 * 109.47565 * 240.00842 * 16 14 12 20 20 C 1.47072 * 118.23374 * 51.45730 * 11 10 9 21 21 C 1.46908 * 110.99894 * 294.30296 * 8 7 6 22 22 H 1.08997 * 109.47021 * 300.00156 * 1 2 3 23 23 H 1.08997 * 109.47379 * 59.99980 * 1 2 3 24 24 H 1.09001 * 109.47243 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46521 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.46861 * 299.99711 * 3 2 1 27 27 H 1.08997 * 109.47366 * 60.00055 * 3 2 1 28 28 H 1.08999 * 109.47152 * 180.02562 * 6 2 1 29 29 H 1.09001 * 109.47067 * 59.99769 * 6 2 1 30 30 H 1.09007 * 109.46749 * 59.99839 * 7 6 2 31 31 H 1.09001 * 109.46898 * 299.99763 * 7 6 2 32 32 H 1.08994 * 109.49506 * 67.29451 * 9 8 7 33 33 H 1.08994 * 109.51398 * 307.22151 * 9 8 7 34 34 H 1.09003 * 109.62622 * 186.45689 * 10 9 8 35 35 H 1.08999 * 109.62950 * 65.87970 * 10 9 8 36 36 H 0.97002 * 120.00194 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.62781 * 68.25550 * 20 11 10 38 38 H 1.09007 * 109.62956 * 188.83247 * 20 11 10 39 39 H 1.09005 * 109.49135 * 292.70628 * 21 8 7 40 40 H 1.09006 * 109.49151 * 52.78388 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0206 -0.6939 -1.2018 5 7 2.3994 -1.2294 -2.1293 6 6 2.0400 -0.7212 1.2493 7 6 1.5300 0.0001 2.4985 8 7 2.0191 -0.6927 3.6980 9 6 1.7524 0.0970 4.9076 10 6 2.4336 -0.5682 6.1083 11 7 1.9991 -1.9719 6.1735 12 6 1.5062 -2.5016 7.3361 13 1 1.0251 -1.8609 8.0601 14 6 1.6196 -3.8633 7.5811 15 7 2.4746 -4.5872 6.8904 16 14 0.5589 -4.6680 8.8914 17 1 -0.3137 -3.6438 9.5198 18 1 -0.2833 -5.7207 8.2688 19 1 1.4301 -5.2793 9.9270 20 6 2.1137 -2.7929 4.9587 21 6 1.4397 -2.0386 3.8017 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1300 -0.7208 1.2495 29 1 1.6766 -1.7489 1.2493 30 1 0.4399 0.0000 2.4985 31 1 1.8933 1.0278 2.4985 32 1 0.6773 0.1458 5.0803 33 1 2.1462 1.1051 4.7784 34 1 2.1456 -0.0527 7.0245 35 1 3.5158 -0.5253 5.9854 36 1 2.5536 -5.5388 7.0614 37 1 3.1658 -2.9597 4.7275 38 1 1.6141 -3.7491 5.1145 39 1 0.3688 -1.9601 3.9899 40 1 1.6070 -2.5794 2.8701 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087592188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:01 Heat of formation + Delta-G solvation = 47.050003 kcal Electronic energy + Delta-G solvation = -18802.688403 eV Core-core repulsion = 16038.999908 eV Total energy + Delta-G solvation = -2763.688495 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.08697 -37.62231 -35.51973 -34.05919 -31.42068 -29.89289 -28.86829 -27.66797 -26.19612 -24.34510 -22.70873 -22.50561 -20.39309 -19.08980 -17.32935 -16.64591 -15.38183 -15.11269 -14.75573 -14.50803 -14.29106 -13.79906 -13.67205 -13.47666 -13.40544 -13.02733 -12.82641 -12.68915 -12.32952 -12.11031 -12.07159 -11.51886 -11.38936 -11.21000 -11.03191 -10.93387 -10.78156 -10.69168 -10.35826 -10.26053 -10.01254 -9.72362 -9.55972 -8.50049 -7.80189 -6.65354 -5.77424 -3.18633 2.64535 2.66083 3.37289 3.45284 3.47239 3.67182 4.28948 4.50783 4.59928 4.66238 4.86045 5.14751 5.30620 5.36780 5.40933 5.45151 5.50840 5.54979 5.56212 5.73624 5.82565 5.84337 5.92235 5.97258 6.11299 6.16512 6.20041 6.26576 6.36171 6.56539 6.70383 6.94498 7.26261 7.43669 7.62691 7.66509 7.72072 7.83221 8.44502 9.22230 9.85837 10.44395 11.31265 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.036558 B = 0.004544 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.729284 B = 6160.543135 C = 6482.458678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.035 3.965 3 C -0.143 4.143 4 C 0.220 3.780 5 N -0.441 5.441 6 C -0.106 4.106 7 C 0.054 3.946 8 N -0.534 5.534 9 C 0.046 3.954 10 C 0.148 3.852 11 N -0.596 5.596 12 C -0.252 4.252 13 H 0.066 0.934 14 C 0.001 3.999 15 N -0.903 5.903 16 Si 0.901 3.099 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.290 1.290 20 C 0.177 3.823 21 C 0.032 3.968 22 H 0.080 0.920 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.027 0.973 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.025 0.975 36 H 0.253 0.747 37 H 0.026 0.974 38 H 0.087 0.913 39 H 0.025 0.975 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 11.756 -10.768 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 C -0.201 4.201 4 C -0.099 4.099 5 N -0.116 5.116 6 C -0.145 4.145 7 C -0.074 4.074 8 N -0.259 5.259 9 C -0.083 4.083 10 C 0.021 3.979 11 N -0.319 5.319 12 C -0.381 4.381 13 H 0.084 0.916 14 C -0.197 4.197 15 N -0.548 5.548 16 Si 0.731 3.269 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.217 1.217 20 C 0.051 3.949 21 C -0.097 4.097 22 H 0.099 0.901 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.105 0.895 39 H 0.043 0.957 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.754 10.706 -12.175 16.445 hybrid contribution -1.485 -0.291 1.015 1.822 sum -4.239 10.415 -11.160 15.843 Atomic orbital electron populations 1.21962 0.91622 1.03377 1.03308 1.18316 0.96704 0.94927 0.86997 1.21949 1.02134 0.92755 1.03258 1.29195 0.93100 0.93349 0.94211 1.81196 1.09101 1.09411 1.11878 1.21674 1.02341 0.99609 0.90910 1.22185 0.97295 0.97854 0.90103 1.61922 1.59117 1.03290 1.01531 1.22595 0.98407 0.95903 0.91445 1.20984 0.96068 0.86788 0.94057 1.44146 1.73479 1.06329 1.07961 1.19234 1.29900 0.91859 0.97122 0.91631 1.25017 0.98159 0.97861 0.98667 1.70038 1.34853 1.06444 1.43439 0.86247 0.80110 0.79345 0.81225 1.20309 1.21606 1.21719 1.20955 0.97566 0.93946 0.82392 1.23032 0.96680 0.89329 1.00634 0.90071 0.91930 0.91631 0.91496 0.91989 0.90074 0.90090 0.90734 0.94844 0.90799 0.95465 0.92041 0.92682 0.95699 0.93681 0.95573 0.89472 0.95671 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.08 37.15 0.30 -0.78 16 2 C 0.03 0.30 0.72 -157.30 -0.11 0.19 16 3 C -0.14 -0.99 8.08 37.16 0.30 -0.69 16 4 C 0.22 2.55 13.86 -20.76 -0.29 2.26 16 5 N -0.44 -6.33 18.54 42.15 0.78 -5.55 16 6 C -0.11 -1.15 4.16 -26.73 -0.11 -1.26 16 7 C 0.05 0.63 4.26 -3.82 -0.02 0.62 16 8 N -0.53 -8.75 4.63 -234.02 -1.08 -9.83 16 9 C 0.05 0.77 5.62 -3.70 -0.02 0.75 16 10 C 0.15 3.07 6.69 -3.60 -0.02 3.04 16 11 N -0.60 -14.92 3.03 -171.74 -0.52 -15.44 16 12 C -0.25 -6.88 9.63 -15.06 -0.15 -7.02 16 13 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 14 C 0.00 0.04 4.93 -17.43 -0.09 -0.05 16 15 N -0.90 -26.19 11.16 55.49 0.62 -25.57 16 16 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 C 0.18 4.23 5.45 -3.37 -0.02 4.21 16 21 C 0.03 0.60 5.48 -3.46 -0.02 0.58 16 22 H 0.08 0.55 6.43 -51.93 -0.33 0.21 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.48 6.43 -51.93 -0.33 0.15 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.89 6.40 -51.93 -0.33 0.56 16 30 H 0.03 0.38 6.41 -51.93 -0.33 0.05 16 31 H 0.07 0.74 6.26 -51.93 -0.32 0.42 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.86 7.99 -51.93 -0.41 0.45 16 34 H 0.05 1.10 7.95 -51.93 -0.41 0.68 16 35 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 2.31 6.12 -51.93 -0.32 1.99 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 1.04 6.16 -51.93 -0.32 0.72 16 LS Contribution 314.83 15.07 4.74 4.74 Total: -1.00 -30.88 314.83 -7.21 -38.09 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -6.48 Total: -4.80 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -0.24 Total: 1.85 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.20 Total: -56.39 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.88 -7.21 -38.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087592188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.136 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds