Wall clock time and date at job start Mon Mar 30 2020 04:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.46990 * 2 1 4 4 C 1.47197 * 109.47344 * 240.00019 * 2 1 3 5 5 N 2.60795 * 109.47376 * 239.99932 * 2 1 3 6 6 C 1.53002 * 109.47313 * 119.99795 * 2 1 3 7 7 C 1.53003 * 109.47070 * 300.00109 * 6 2 1 8 8 N 1.46899 * 109.47336 * 179.97438 * 7 6 2 9 9 C 1.46895 * 110.99989 * 170.00208 * 8 7 6 10 10 C 1.53241 * 109.33538 * 187.25118 * 9 8 7 11 11 N 1.47082 * 108.52509 * 306.16899 * 10 9 8 12 12 C 1.36935 * 120.87800 * 231.18634 * 11 10 9 13 13 H 1.07994 * 120.00243 * 27.12925 * 12 11 10 14 14 C 1.38815 * 119.99552 * 206.84012 * 12 11 10 15 15 N 1.31614 * 119.99986 * 17.18837 * 14 12 11 16 16 Si 1.86797 * 120.00057 * 197.17547 * 14 12 11 17 17 H 1.48508 * 109.47149 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47196 * 120.00464 * 16 14 12 19 19 H 1.48497 * 109.47565 * 240.00842 * 16 14 12 20 20 C 1.47072 * 118.23374 * 51.45730 * 11 10 9 21 21 C 1.46908 * 110.99894 * 294.30296 * 8 7 6 22 22 H 1.08997 * 109.47021 * 300.00156 * 1 2 3 23 23 H 1.08997 * 109.47379 * 59.99980 * 1 2 3 24 24 H 1.09001 * 109.47243 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46521 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.46861 * 299.99711 * 3 2 1 27 27 H 1.08997 * 109.47366 * 60.00055 * 3 2 1 28 28 H 1.08999 * 109.47152 * 180.02562 * 6 2 1 29 29 H 1.09001 * 109.47067 * 59.99769 * 6 2 1 30 30 H 1.09007 * 109.46749 * 59.99839 * 7 6 2 31 31 H 1.09001 * 109.46898 * 299.99763 * 7 6 2 32 32 H 1.08994 * 109.49506 * 67.29451 * 9 8 7 33 33 H 1.08994 * 109.51398 * 307.22151 * 9 8 7 34 34 H 1.09003 * 109.62622 * 186.45689 * 10 9 8 35 35 H 1.08999 * 109.62950 * 65.87970 * 10 9 8 36 36 H 0.97002 * 120.00194 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.62781 * 68.25550 * 20 11 10 38 38 H 1.09007 * 109.62956 * 188.83247 * 20 11 10 39 39 H 1.09005 * 109.49135 * 292.70628 * 21 8 7 40 40 H 1.09006 * 109.49151 * 52.78388 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0206 -0.6939 -1.2018 5 7 2.3994 -1.2294 -2.1293 6 6 2.0400 -0.7212 1.2493 7 6 1.5300 0.0001 2.4985 8 7 2.0191 -0.6927 3.6980 9 6 1.7524 0.0970 4.9076 10 6 2.4336 -0.5682 6.1083 11 7 1.9991 -1.9719 6.1735 12 6 1.5062 -2.5016 7.3361 13 1 1.0251 -1.8609 8.0601 14 6 1.6196 -3.8633 7.5811 15 7 2.4746 -4.5872 6.8904 16 14 0.5589 -4.6680 8.8914 17 1 -0.3137 -3.6438 9.5198 18 1 -0.2833 -5.7207 8.2688 19 1 1.4301 -5.2793 9.9270 20 6 2.1137 -2.7929 4.9587 21 6 1.4397 -2.0386 3.8017 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1300 -0.7208 1.2495 29 1 1.6766 -1.7489 1.2493 30 1 0.4399 0.0000 2.4985 31 1 1.8933 1.0278 2.4985 32 1 0.6773 0.1458 5.0803 33 1 2.1462 1.1051 4.7784 34 1 2.1456 -0.0527 7.0245 35 1 3.5158 -0.5253 5.9854 36 1 2.5536 -5.5388 7.0614 37 1 3.1658 -2.9597 4.7275 38 1 1.6141 -3.7491 5.1145 39 1 0.3688 -1.9601 3.9899 40 1 1.6070 -2.5794 2.8701 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087592188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:01 Heat of formation + Delta-G solvation = 27.298800 kcal Electronic energy + Delta-G solvation = -18803.544880 eV Core-core repulsion = 16038.999908 eV Total energy + Delta-G solvation = -2764.544972 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.13869 -38.88869 -36.71480 -35.54663 -33.21638 -31.54513 -30.10705 -28.20921 -27.68984 -25.59752 -24.19490 -24.11035 -21.46790 -20.71489 -18.73145 -17.99414 -16.89994 -16.19684 -16.09673 -15.72757 -15.43153 -15.25027 -15.10002 -14.92628 -14.66093 -14.29340 -14.05458 -13.78219 -13.23686 -13.16932 -13.01686 -12.89840 -12.69588 -12.58468 -12.38091 -12.12023 -12.11088 -11.96906 -11.82458 -11.70203 -11.60383 -11.35320 -11.16417 -10.57107 -9.12636 -8.63697 -7.85494 -5.30130 1.46946 1.48694 1.59281 1.72341 1.76221 2.52479 2.83367 3.13905 3.30258 3.74056 3.89184 3.93839 4.07901 4.27252 4.41342 4.44469 4.47051 4.66957 4.69775 4.75713 4.83102 4.86743 4.91516 4.95843 5.01491 5.08460 5.10827 5.17128 5.22899 5.28298 5.42281 5.44877 5.47793 5.64059 5.72908 6.28067 6.40762 6.42389 6.55685 7.15852 7.87757 8.41392 9.21064 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.036558 B = 0.004544 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.729284 B = 6160.543135 C = 6482.458678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.043 3.957 3 C -0.142 4.142 4 C 0.240 3.760 5 N -0.495 5.495 6 C -0.103 4.103 7 C 0.057 3.943 8 N -0.546 5.546 9 C 0.058 3.942 10 C 0.140 3.860 11 N -0.615 5.615 12 C -0.262 4.262 13 H 0.069 0.931 14 C -0.052 4.052 15 N -0.938 5.938 16 Si 0.967 3.033 17 H -0.265 1.265 18 H -0.291 1.291 19 H -0.293 1.293 20 C 0.183 3.817 21 C 0.051 3.949 22 H 0.096 0.904 23 H 0.075 0.925 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.103 0.897 32 H 0.027 0.973 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.013 0.987 36 H 0.249 0.751 37 H -0.006 1.006 38 H 0.052 0.948 39 H 0.022 0.978 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.260 14.202 -11.105 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.039 3.961 3 C -0.200 4.200 4 C -0.077 4.077 5 N -0.170 5.170 6 C -0.142 4.142 7 C -0.070 4.070 8 N -0.271 5.271 9 C -0.071 4.071 10 C 0.015 3.985 11 N -0.339 5.339 12 C -0.392 4.392 13 H 0.087 0.913 14 C -0.247 4.247 15 N -0.584 5.584 16 Si 0.795 3.205 17 H -0.189 1.189 18 H -0.217 1.217 19 H -0.220 1.220 20 C 0.057 3.943 21 C -0.078 4.078 22 H 0.115 0.885 23 H 0.094 0.906 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.118 0.882 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.045 0.955 33 H 0.119 0.881 34 H 0.078 0.922 35 H 0.031 0.969 36 H 0.058 0.942 37 H 0.012 0.988 38 H 0.071 0.929 39 H 0.040 0.960 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.154 13.198 -12.526 18.664 hybrid contribution -0.992 -0.998 1.127 1.803 sum -5.146 12.200 -11.398 17.471 Atomic orbital electron populations 1.22003 0.90169 1.03314 1.04758 1.18440 0.97645 0.95511 0.84520 1.21997 1.02010 0.91156 1.04828 1.29786 0.91681 0.92173 0.94066 1.81215 1.10929 1.11111 1.13757 1.21591 1.01759 0.99106 0.91709 1.22291 0.98258 0.98644 0.87767 1.61832 1.59661 1.02514 1.03138 1.22434 0.97947 0.97013 0.89741 1.21184 0.95797 0.84927 0.96624 1.44447 1.73804 1.08009 1.07671 1.19594 1.29459 0.92276 0.97843 0.91346 1.25784 0.99431 0.98463 1.01072 1.70203 1.36594 1.06291 1.45335 0.85217 0.78389 0.78323 0.78589 1.18906 1.21741 1.22044 1.20716 0.95698 0.93587 0.84281 1.22642 0.95652 0.90715 0.98796 0.88501 0.90627 0.92525 0.91848 0.90813 0.88154 0.91058 0.92236 0.93330 0.87895 0.95512 0.88136 0.92226 0.96887 0.94195 0.98782 0.92946 0.95985 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.08 71.98 0.58 -1.09 16 2 C 0.04 0.63 0.72 -53.99 -0.04 0.59 16 3 C -0.14 -1.42 8.08 71.98 0.58 -0.84 16 4 C 0.24 5.25 13.86 89.44 1.24 6.49 16 5 N -0.49 -13.99 18.54 20.00 0.37 -13.62 16 6 C -0.10 -1.97 4.16 30.60 0.13 -1.84 16 7 C 0.06 1.13 4.26 86.30 0.37 1.49 16 8 N -0.55 -16.58 4.63 -894.30 -4.14 -20.72 16 9 C 0.06 1.77 5.62 86.38 0.49 2.25 16 10 C 0.14 5.70 6.69 86.35 0.58 6.28 16 11 N -0.62 -31.15 3.03 -697.26 -2.11 -33.26 16 12 C -0.26 -14.44 9.63 84.03 0.81 -13.64 16 13 H 0.07 3.66 7.88 -2.91 -0.02 3.63 16 14 C -0.05 -2.95 4.93 84.86 0.42 -2.53 16 15 N -0.94 -56.26 11.16 21.65 0.24 -56.02 16 16 Si 0.97 44.90 29.59 68.60 2.03 46.93 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 19 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 20 C 0.18 8.99 5.45 86.50 0.47 9.46 16 21 C 0.05 1.87 5.48 86.53 0.47 2.35 16 22 H 0.10 0.86 6.43 -2.39 -0.02 0.84 16 23 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.10 0.65 6.43 -2.39 -0.02 0.64 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 1.33 6.40 -2.39 -0.02 1.31 16 30 H 0.05 0.86 6.41 -2.38 -0.02 0.85 16 31 H 0.10 1.49 6.26 -2.39 -0.01 1.48 16 32 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 2.34 7.99 -2.39 -0.02 2.32 16 34 H 0.06 2.31 7.95 -2.39 -0.02 2.30 16 35 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 37 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.05 2.90 6.12 -2.38 -0.01 2.89 16 39 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.08 2.57 6.16 -2.38 -0.01 2.56 16 Total: -1.00 -69.26 314.83 3.49 -65.77 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: 1.01 Total: 1.96 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 6.09 Total: 8.97 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -5.64 Total: -123.62 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -69.26 3.49 -65.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087592188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.067 kcal (2) G-P(sol) polarization free energy of solvation -69.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds