Wall clock time and date at job start Mon Mar 30 2020 04:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47142 * 2 1 4 4 N 1.40081 * 126.03268 * 270.61440 * 3 2 1 5 5 C 1.30836 * 108.20450 * 180.02562 * 4 3 2 6 6 C 1.50697 * 125.90463 * 180.02562 * 5 4 3 7 7 C 1.39876 * 108.19979 * 359.78134 * 5 4 3 8 8 C 1.34940 * 126.03705 * 90.63511 * 3 2 1 9 9 C 1.50703 * 126.13136 * 359.94865 * 8 3 2 10 10 N 1.46902 * 109.46950 * 84.91220 * 9 8 3 11 11 C 1.46902 * 111.00046 * 71.20738 * 10 9 8 12 12 C 1.46901 * 110.99771 * 195.15576 * 10 9 8 13 13 H 1.09000 * 109.47653 * 300.00270 * 12 10 9 14 14 C 1.53002 * 109.47347 * 60.00190 * 12 10 9 15 15 C 1.50699 * 109.47188 * 180.02562 * 12 10 9 16 16 H 1.07997 * 119.99983 * 0.02562 * 15 12 10 17 17 C 1.37879 * 120.00164 * 179.97438 * 15 12 10 18 18 N 1.31519 * 119.99788 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 120.00232 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46741 * 60.00181 * 19 17 15 21 21 H 1.48497 * 109.47439 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47241 * 300.00577 * 19 17 15 23 23 H 1.08997 * 109.47035 * 64.66768 * 1 2 3 24 24 H 1.09008 * 109.46859 * 184.66183 * 1 2 3 25 25 H 1.08998 * 109.46930 * 304.65720 * 1 2 3 26 26 H 1.09005 * 109.47305 * 239.99589 * 2 1 3 27 27 H 1.09002 * 109.46900 * 119.99911 * 2 1 3 28 28 H 1.09007 * 109.47201 * 89.97494 * 6 5 4 29 29 H 1.08998 * 109.47675 * 209.97734 * 6 5 4 30 30 H 1.09004 * 109.46766 * 329.98104 * 6 5 4 31 31 H 1.08002 * 126.03809 * 180.22929 * 7 5 4 32 32 H 1.09002 * 109.46993 * 324.91644 * 9 8 3 33 33 H 1.09000 * 109.47306 * 204.91573 * 9 8 3 34 34 H 1.08997 * 109.46729 * 189.82426 * 11 10 9 35 35 H 1.09007 * 109.46598 * 309.82123 * 11 10 9 36 36 H 1.09000 * 109.47101 * 69.82050 * 11 10 9 37 37 H 1.08999 * 109.47124 * 59.99772 * 14 12 10 38 38 H 1.09007 * 109.46867 * 300.00134 * 14 12 10 39 39 H 1.08998 * 109.47704 * 179.97438 * 14 12 10 40 40 H 0.97004 * 119.99696 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2816 2.1622 -1.1327 5 6 2.7013 3.3348 -0.7322 6 6 3.0970 4.4837 -1.6236 7 6 2.7141 3.3400 0.6665 8 6 2.2944 2.1256 1.0911 9 6 2.1545 1.6856 2.5257 10 7 3.3699 0.9718 2.9396 11 6 4.5018 1.8975 3.0806 12 6 3.1433 0.2240 4.1835 13 1 2.8569 0.9153 4.9761 14 6 2.0241 -0.7968 3.9683 15 6 4.4092 -0.4931 4.5763 16 1 5.2937 -0.4021 3.9634 17 6 4.4385 -1.2646 5.7187 18 7 3.3615 -1.3750 6.4653 19 14 6.0074 -2.1540 6.2051 20 1 7.0938 -1.1632 6.4133 21 1 5.7784 -2.9099 7.4626 22 1 6.3972 -3.0964 5.1256 23 1 -0.3633 0.4397 -0.9288 24 1 -0.3633 -1.0244 0.0835 25 1 -0.3633 0.5844 0.8453 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2235 5.1032 -1.8272 29 1 3.8598 5.0832 -1.1268 30 1 3.4938 4.0956 -2.5618 31 1 3.0089 4.1664 1.2962 32 1 1.2941 1.0231 2.6202 33 1 2.0119 2.5594 3.1615 34 1 5.4217 1.3285 3.2155 35 1 4.5827 2.5117 2.1837 36 1 4.3408 2.5389 3.9471 37 1 2.3104 -1.4882 3.1758 38 1 1.1086 -0.2778 3.6845 39 1 1.8562 -1.3520 4.8912 40 1 3.3820 -1.9180 7.2689 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089184708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:47 Heat of formation + Delta-G solvation = 75.094602 kcal Electronic energy + Delta-G solvation = -19131.310319 eV Core-core repulsion = 16368.837929 eV Total energy + Delta-G solvation = -2762.472390 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.97344 -37.02407 -34.53708 -33.01609 -31.24160 -30.15497 -28.99953 -27.35817 -26.77385 -24.70922 -23.29186 -22.80821 -20.08783 -19.70137 -18.69192 -16.49964 -16.08455 -15.43742 -14.89246 -14.49630 -14.09109 -13.81384 -13.78376 -13.36373 -13.05774 -12.78112 -12.71296 -12.46760 -12.05541 -11.89676 -11.73690 -11.68276 -11.14200 -11.11361 -11.01159 -10.76192 -10.62699 -10.22658 -10.17301 -10.12255 -9.89036 -9.00854 -8.72719 -8.46690 -8.12873 -7.28994 -6.06326 -4.10904 2.22710 2.84154 3.08213 3.29537 3.33961 3.37179 4.37465 4.76891 4.90277 5.11380 5.14952 5.20417 5.26817 5.33538 5.46223 5.66358 5.68012 5.75616 5.79357 5.89179 5.98387 6.06226 6.16445 6.19923 6.21070 6.38826 6.56382 6.72848 6.77534 6.92394 7.02644 7.04836 7.38712 7.43534 7.61081 7.77540 8.07935 8.13315 8.23965 8.50365 8.95057 9.54451 11.00453 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.028824 B = 0.005686 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.184294 B = 4922.798311 C = 5423.223690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.126 3.874 3 N -0.355 5.355 4 N -0.309 5.309 5 C 0.065 3.935 6 C -0.067 4.067 7 C -0.282 4.282 8 C 0.122 3.878 9 C 0.101 3.899 10 N -0.532 5.532 11 C 0.038 3.962 12 C 0.212 3.788 13 H 0.001 0.999 14 C -0.135 4.135 15 C -0.504 4.504 16 H 0.063 0.937 17 C 0.060 3.940 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.139 0.861 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.016 0.984 37 H 0.034 0.966 38 H 0.008 0.992 39 H 0.088 0.912 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 6.619 -10.469 13.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.005 3.995 3 N -0.137 5.137 4 N -0.132 5.132 5 C -0.101 4.101 6 C -0.126 4.126 7 C -0.312 4.312 8 C -0.007 4.007 9 C -0.028 4.028 10 N -0.258 5.258 11 C -0.110 4.110 12 C 0.107 3.893 13 H 0.018 0.982 14 C -0.193 4.193 15 C -0.542 4.542 16 H 0.081 0.919 17 C -0.141 4.141 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.125 0.875 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.157 0.843 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.053 0.947 38 H 0.027 0.973 39 H 0.106 0.894 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.304 5.281 -11.651 13.497 hybrid contribution 0.797 0.495 1.733 1.971 sum -3.507 5.776 -9.918 12.001 Atomic orbital electron populations 1.22168 0.94831 1.02866 1.02611 1.21714 0.94593 0.78144 1.05065 1.48458 1.50602 1.11657 1.02966 1.77178 1.23731 1.03833 1.08467 1.22155 0.99622 0.94275 0.94032 1.20094 1.01322 0.93421 0.97745 1.21030 1.17005 0.98986 0.94203 1.21168 0.97569 0.91189 0.90738 1.20772 0.96436 0.98057 0.87584 1.62137 1.02221 1.24743 1.36659 1.22223 0.95641 0.94918 0.98264 1.19291 0.95550 0.91058 0.83408 0.98173 1.21904 0.95103 0.99703 1.02559 1.21080 0.96621 1.28829 1.07704 0.91919 1.24917 0.96421 0.96536 0.96254 1.69874 1.27657 1.40401 1.15332 0.86572 0.83410 0.79780 0.77718 1.20314 1.21338 1.20242 0.92209 0.90615 0.92111 0.89348 0.87525 0.91085 0.90781 0.91386 0.84321 0.89508 0.93254 0.90950 0.93264 0.96582 0.94693 0.97334 0.89388 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 10.24 37.16 0.38 -1.62 16 2 C 0.13 1.82 6.86 -4.04 -0.03 1.79 16 3 N -0.36 -6.02 3.61 -57.14 -0.21 -6.23 16 4 N -0.31 -5.35 12.58 33.67 0.42 -4.93 16 5 C 0.06 1.01 7.22 -82.40 -0.59 0.41 16 6 C -0.07 -0.75 10.45 36.00 0.38 -0.37 16 7 C -0.28 -4.56 9.52 -40.01 -0.38 -4.94 16 8 C 0.12 2.11 5.85 -82.27 -0.48 1.63 16 9 C 0.10 1.83 4.76 -4.97 -0.02 1.80 16 10 N -0.53 -11.14 4.58 -237.72 -1.09 -12.23 16 11 C 0.04 0.75 9.02 60.07 0.54 1.30 16 12 C 0.21 5.15 2.05 -68.86 -0.14 5.01 16 13 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 14 C -0.13 -3.08 8.79 37.16 0.33 -2.76 16 15 C -0.50 -13.41 7.99 -34.44 -0.28 -13.68 16 16 H 0.06 1.68 6.41 -52.49 -0.34 1.34 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 19 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.11 1.66 7.75 -51.93 -0.40 1.26 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16 32 H 0.09 1.54 5.47 -51.93 -0.28 1.25 16 33 H 0.05 0.87 8.06 -51.93 -0.42 0.45 16 34 H 0.07 1.52 6.46 -51.93 -0.34 1.19 16 35 H 0.05 0.89 6.35 -51.92 -0.33 0.56 16 36 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.01 0.16 6.11 -51.93 -0.32 -0.16 16 39 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 40 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 LS Contribution 321.43 15.07 4.84 4.84 Total: -1.00 -29.24 321.43 -7.34 -36.58 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.52 Total: 0.05 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -0.39 Total: -9.91 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.24 Total: -47.51 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.24 -7.34 -36.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089184708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.670 kcal (2) G-P(sol) polarization free energy of solvation -29.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds