Wall clock time and date at job start Mon Mar 30 2020 04:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47142 * 2 1 4 4 N 1.40081 * 126.03268 * 270.61440 * 3 2 1 5 5 C 1.30836 * 108.20450 * 180.02562 * 4 3 2 6 6 C 1.50697 * 125.90463 * 180.02562 * 5 4 3 7 7 C 1.39876 * 108.19979 * 359.78134 * 5 4 3 8 8 C 1.34940 * 126.03705 * 90.63511 * 3 2 1 9 9 C 1.50703 * 126.13136 * 359.94865 * 8 3 2 10 10 N 1.46902 * 109.46950 * 84.91220 * 9 8 3 11 11 C 1.46902 * 111.00046 * 71.20738 * 10 9 8 12 12 C 1.46901 * 110.99771 * 195.15576 * 10 9 8 13 13 H 1.09000 * 109.47653 * 300.00270 * 12 10 9 14 14 C 1.53002 * 109.47347 * 60.00190 * 12 10 9 15 15 C 1.50699 * 109.47188 * 180.02562 * 12 10 9 16 16 H 1.07997 * 119.99983 * 0.02562 * 15 12 10 17 17 C 1.37879 * 120.00164 * 179.97438 * 15 12 10 18 18 N 1.31519 * 119.99788 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 120.00232 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46741 * 60.00181 * 19 17 15 21 21 H 1.48497 * 109.47439 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47241 * 300.00577 * 19 17 15 23 23 H 1.08997 * 109.47035 * 64.66768 * 1 2 3 24 24 H 1.09008 * 109.46859 * 184.66183 * 1 2 3 25 25 H 1.08998 * 109.46930 * 304.65720 * 1 2 3 26 26 H 1.09005 * 109.47305 * 239.99589 * 2 1 3 27 27 H 1.09002 * 109.46900 * 119.99911 * 2 1 3 28 28 H 1.09007 * 109.47201 * 89.97494 * 6 5 4 29 29 H 1.08998 * 109.47675 * 209.97734 * 6 5 4 30 30 H 1.09004 * 109.46766 * 329.98104 * 6 5 4 31 31 H 1.08002 * 126.03809 * 180.22929 * 7 5 4 32 32 H 1.09002 * 109.46993 * 324.91644 * 9 8 3 33 33 H 1.09000 * 109.47306 * 204.91573 * 9 8 3 34 34 H 1.08997 * 109.46729 * 189.82426 * 11 10 9 35 35 H 1.09007 * 109.46598 * 309.82123 * 11 10 9 36 36 H 1.09000 * 109.47101 * 69.82050 * 11 10 9 37 37 H 1.08999 * 109.47124 * 59.99772 * 14 12 10 38 38 H 1.09007 * 109.46867 * 300.00134 * 14 12 10 39 39 H 1.08998 * 109.47704 * 179.97438 * 14 12 10 40 40 H 0.97004 * 119.99696 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2816 2.1622 -1.1327 5 6 2.7013 3.3348 -0.7322 6 6 3.0970 4.4837 -1.6236 7 6 2.7141 3.3400 0.6665 8 6 2.2944 2.1256 1.0911 9 6 2.1545 1.6856 2.5257 10 7 3.3699 0.9718 2.9396 11 6 4.5018 1.8975 3.0806 12 6 3.1433 0.2240 4.1835 13 1 2.8569 0.9153 4.9761 14 6 2.0241 -0.7968 3.9683 15 6 4.4092 -0.4931 4.5763 16 1 5.2937 -0.4021 3.9634 17 6 4.4385 -1.2646 5.7187 18 7 3.3615 -1.3750 6.4653 19 14 6.0074 -2.1540 6.2051 20 1 7.0938 -1.1632 6.4133 21 1 5.7784 -2.9099 7.4626 22 1 6.3972 -3.0964 5.1256 23 1 -0.3633 0.4397 -0.9288 24 1 -0.3633 -1.0244 0.0835 25 1 -0.3633 0.5844 0.8453 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2235 5.1032 -1.8272 29 1 3.8598 5.0832 -1.1268 30 1 3.4938 4.0956 -2.5618 31 1 3.0089 4.1664 1.2962 32 1 1.2941 1.0231 2.6202 33 1 2.0119 2.5594 3.1615 34 1 5.4217 1.3285 3.2155 35 1 4.5827 2.5117 2.1837 36 1 4.3408 2.5389 3.9471 37 1 2.3104 -1.4882 3.1758 38 1 1.1086 -0.2778 3.6845 39 1 1.8562 -1.3520 4.8912 40 1 3.3820 -1.9180 7.2689 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089184708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:47 Heat of formation + Delta-G solvation = 57.435373 kcal Electronic energy + Delta-G solvation = -19132.076081 eV Core-core repulsion = 16368.837929 eV Total energy + Delta-G solvation = -2763.238152 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.22291 -38.72398 -35.68425 -34.91500 -32.54102 -31.48322 -30.70705 -28.58182 -28.18592 -26.59145 -24.92213 -23.95838 -21.59921 -21.21975 -19.98264 -18.35810 -17.53950 -17.07874 -16.29629 -16.03279 -15.55655 -15.33372 -15.21916 -14.56996 -14.34526 -14.09565 -14.04021 -13.71650 -13.61453 -13.03347 -12.99588 -12.95387 -12.90117 -12.68702 -12.60173 -12.33631 -12.21759 -12.03796 -11.96591 -11.68887 -11.42054 -10.92769 -10.52045 -9.98346 -9.38869 -9.00624 -8.11163 -6.22308 0.94251 1.43507 1.44283 1.51841 1.66099 1.86675 2.42999 3.17567 3.38018 3.64852 3.75087 4.06285 4.11311 4.15850 4.40202 4.46313 4.50562 4.61145 4.71903 4.75048 4.77217 4.83839 4.88781 4.91720 5.01521 5.03253 5.08328 5.12931 5.16019 5.24166 5.36633 5.49768 5.72063 5.77124 5.88346 6.15719 6.24929 6.34861 6.65584 6.88158 6.90825 7.46700 8.94276 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.028824 B = 0.005686 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.184294 B = 4922.798311 C = 5423.223690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.121 3.879 3 N -0.363 5.363 4 N -0.332 5.332 5 C 0.062 3.938 6 C -0.065 4.065 7 C -0.286 4.286 8 C 0.106 3.894 9 C 0.109 3.891 10 N -0.537 5.537 11 C 0.044 3.956 12 C 0.218 3.782 13 H -0.031 1.031 14 C -0.122 4.122 15 C -0.519 4.519 16 H 0.056 0.944 17 C 0.016 3.984 18 N -0.917 5.917 19 Si 0.956 3.044 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.274 1.274 23 H 0.060 0.940 24 H 0.097 0.903 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.013 0.987 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.061 0.939 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.857 7.240 -11.561 14.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.000 4.000 3 N -0.145 5.145 4 N -0.155 5.155 5 C -0.104 4.104 6 C -0.124 4.124 7 C -0.316 4.316 8 C -0.023 4.023 9 C -0.020 4.020 10 N -0.262 5.262 11 C -0.104 4.104 12 C 0.112 3.888 13 H -0.014 1.014 14 C -0.180 4.180 15 C -0.557 4.557 16 H 0.074 0.926 17 C -0.183 4.183 18 N -0.557 5.557 19 Si 0.782 3.218 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.199 1.199 23 H 0.079 0.921 24 H 0.116 0.884 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.172 0.828 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.032 0.968 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.080 0.920 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.131 5.907 -12.759 14.654 hybrid contribution 0.728 0.360 2.024 2.181 sum -3.402 6.267 -10.734 12.887 Atomic orbital electron populations 1.22098 0.92965 1.04137 1.02259 1.21844 0.96119 0.77315 1.04701 1.48689 1.50719 1.12266 1.02792 1.77158 1.24705 1.04746 1.08914 1.22837 0.98342 0.94725 0.94447 1.20252 1.02595 0.92248 0.97291 1.21327 1.16381 0.98985 0.94904 1.21089 0.98929 0.92024 0.90278 1.20681 0.95027 0.97930 0.88399 1.62043 1.03754 1.25756 1.34631 1.22153 0.94616 0.94565 0.99048 1.19084 0.95034 0.90854 0.83874 1.01389 1.21696 0.95910 0.99241 1.01122 1.21342 0.97349 1.29166 1.07889 0.92610 1.25622 0.99134 0.97256 0.96295 1.69994 1.29191 1.40924 1.15580 0.85648 0.80091 0.78690 0.77398 1.19889 1.20937 1.19929 0.92114 0.88439 0.92867 0.88553 0.88984 0.89340 0.88960 0.90879 0.82804 0.89418 0.92730 0.92538 0.91334 0.96830 0.94749 0.94755 0.91978 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 10.24 71.98 0.74 -2.81 16 2 C 0.12 3.38 6.86 86.38 0.59 3.97 16 3 N -0.36 -11.90 3.61 -334.69 -1.21 -13.11 16 4 N -0.33 -10.99 12.58 -47.38 -0.60 -11.59 16 5 C 0.06 1.80 7.22 43.10 0.31 2.11 16 6 C -0.07 -1.26 10.45 71.24 0.74 -0.52 16 7 C -0.29 -8.70 9.52 21.99 0.21 -8.49 16 8 C 0.11 3.53 5.85 41.41 0.24 3.77 16 9 C 0.11 3.85 4.76 85.56 0.41 4.26 16 10 N -0.54 -22.36 4.58 -906.01 -4.15 -26.51 16 11 C 0.04 1.75 9.02 127.69 1.15 2.90 16 12 C 0.22 10.68 2.05 44.17 0.09 10.77 16 13 H -0.03 -1.71 8.14 -2.39 -0.02 -1.73 16 14 C -0.12 -5.59 8.79 71.98 0.63 -4.96 16 15 C -0.52 -27.87 7.99 25.60 0.20 -27.67 16 16 H 0.06 3.02 6.41 -2.91 -0.02 3.00 16 17 C 0.02 0.86 5.30 84.65 0.45 1.31 16 18 N -0.92 -51.34 11.32 21.45 0.24 -51.09 16 19 Si 0.96 43.02 29.54 68.60 2.03 45.04 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 27 H 0.09 2.83 7.75 -2.39 -0.02 2.81 16 28 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 32 H 0.09 3.04 5.47 -2.39 -0.01 3.03 16 33 H 0.05 1.87 8.06 -2.39 -0.02 1.85 16 34 H 0.06 2.38 6.46 -2.39 -0.02 2.36 16 35 H 0.07 2.40 6.35 -2.38 -0.02 2.39 16 36 H 0.01 0.52 8.12 -2.39 -0.02 0.50 16 37 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.03 1.35 6.11 -2.38 -0.01 1.34 16 39 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 40 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -61.78 321.43 3.09 -58.69 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 1.00 Total: 13.92 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 5.77 Total: -15.35 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -5.71 Total: -102.30 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -61.78 3.09 -58.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089184708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.124 kcal (2) G-P(sol) polarization free energy of solvation -61.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds