Wall clock time and date at job start Mon Mar 30 2020 04:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47315 * 2 1 4 4 N 1.46500 * 109.46702 * 119.99897 * 2 1 3 5 5 C 1.36932 * 120.00189 * 301.89653 * 4 2 1 6 6 H 1.08003 * 120.00282 * 324.86021 * 5 4 2 7 7 C 1.38820 * 119.99954 * 144.86111 * 5 4 2 8 8 N 1.31623 * 119.99632 * 157.16692 * 7 5 4 9 9 Si 1.86800 * 120.00004 * 337.16915 * 7 5 4 10 10 H 1.48502 * 109.46927 * 95.35275 * 9 7 5 11 11 H 1.48498 * 109.46996 * 215.35517 * 9 7 5 12 12 H 1.48497 * 109.46956 * 335.35494 * 9 7 5 13 13 C 1.46502 * 119.99893 * 121.90279 * 4 2 1 14 14 C 1.53002 * 109.47189 * 89.99662 * 13 4 2 15 15 C 1.53004 * 109.46651 * 180.02562 * 14 13 4 16 16 C 1.50703 * 109.46549 * 179.97438 * 15 14 13 17 17 C 1.39870 * 126.03640 * 90.03077 * 16 15 14 18 18 N 1.30839 * 108.20315 * 179.97438 * 17 16 15 19 19 N 1.40083 * 108.20586 * 359.97438 * 18 17 16 20 20 C 1.46501 * 126.04231 * 179.97438 * 19 18 17 21 21 C 1.34958 * 107.92431 * 359.76203 * 19 18 17 22 22 H 1.09004 * 109.46876 * 305.33437 * 1 2 3 23 23 H 1.09007 * 109.47018 * 65.32737 * 1 2 3 24 24 H 1.08992 * 109.47608 * 185.32831 * 1 2 3 25 25 H 1.08995 * 109.47283 * 239.99980 * 2 1 3 26 26 H 1.08996 * 109.47149 * 175.19036 * 3 2 1 27 27 H 1.09005 * 109.47188 * 295.19004 * 3 2 1 28 28 H 1.09004 * 109.47434 * 55.18246 * 3 2 1 29 29 H 0.97003 * 119.99518 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.46990 * 329.99779 * 13 4 2 31 31 H 1.09001 * 109.47227 * 209.99686 * 13 4 2 32 32 H 1.09000 * 109.47059 * 60.00160 * 14 13 4 33 33 H 1.08999 * 109.47150 * 299.99594 * 14 13 4 34 34 H 1.08992 * 109.47501 * 300.00014 * 15 14 13 35 35 H 1.09000 * 109.47309 * 60.00251 * 15 14 13 36 36 H 1.07998 * 125.90149 * 359.97438 * 17 16 15 37 37 H 1.09001 * 109.46689 * 89.98011 * 20 19 18 38 38 H 1.08997 * 109.47647 * 209.97757 * 20 19 18 39 39 H 1.09001 * 109.47084 * 329.98633 * 20 19 18 40 40 H 1.07995 * 126.12921 * 180.24074 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6557 -0.2459 2.4395 6 1 1.5323 0.8118 2.6200 7 6 1.4467 -1.1545 3.4680 8 7 1.5441 -0.7638 4.7211 9 14 1.0271 -2.9315 3.0735 10 1 2.2672 -3.7484 3.0906 11 1 0.0769 -3.4528 4.0886 12 1 0.4039 -3.0059 1.7277 13 6 2.8946 -1.8570 1.0622 14 6 4.3542 -1.3988 1.0432 15 6 5.2693 -2.6169 0.9027 16 6 6.7070 -2.1655 0.8833 17 6 7.5374 -2.0156 1.9988 18 7 8.7097 -1.6088 1.5838 19 7 8.6624 -1.4875 0.1890 20 6 9.7636 -1.0584 -0.6767 21 6 7.4246 -1.8402 -0.2168 22 1 -0.3633 0.5944 0.8384 23 1 -0.3633 0.4290 -0.9339 24 1 -0.3634 -1.0231 0.0954 25 1 1.8934 -0.5138 -0.8899 26 1 3.1266 1.4436 0.0862 27 1 1.7488 1.9308 -0.9300 28 1 1.6080 1.9807 0.8437 29 1 1.3977 -1.3986 5.4398 30 1 2.6654 -2.3787 0.1331 31 1 2.7358 -2.5295 1.9053 32 1 4.5834 -0.8770 1.9724 33 1 4.5130 -0.7264 0.2002 34 1 5.1106 -3.2897 1.7454 35 1 5.0400 -3.1383 -0.0267 36 1 7.2591 -2.2031 3.0253 37 1 10.3424 -1.9286 -0.9864 38 1 9.3600 -0.5585 -1.5572 39 1 10.4077 -0.3692 -0.1307 40 1 7.0694 -1.8570 -1.2366 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131459084.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:35 Heat of formation + Delta-G solvation = 91.096389 kcal Electronic energy + Delta-G solvation = -18700.680627 eV Core-core repulsion = 15938.902127 eV Total energy + Delta-G solvation = -2761.778501 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.01778 -36.99535 -34.36642 -32.78403 -32.11377 -30.60440 -28.87238 -26.93418 -26.25811 -24.83320 -23.25797 -21.16626 -20.94802 -19.81961 -19.33664 -16.77476 -16.18680 -15.40142 -15.26374 -14.74420 -14.37534 -13.91947 -13.50664 -13.19655 -13.12082 -12.78181 -12.68224 -12.48052 -12.11309 -11.97729 -11.74545 -11.47196 -11.33432 -10.87430 -10.71069 -10.62434 -10.39816 -10.35371 -10.07409 -9.82697 -9.54103 -9.29472 -9.26169 -8.39217 -8.13899 -6.72775 -5.88956 -3.26234 2.00429 2.61635 3.00611 3.37399 3.53448 3.58324 4.53639 4.61475 4.92846 5.00007 5.00875 5.21136 5.26346 5.41437 5.50397 5.65115 5.85697 5.92812 5.99866 6.07877 6.15441 6.21610 6.29722 6.36239 6.39181 6.55803 6.59406 6.61838 6.71099 6.77264 6.83939 7.00568 7.13761 7.14736 7.21121 7.24194 7.82936 8.16412 8.48968 9.11437 9.84109 10.24496 11.27246 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.021997 B = 0.005905 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.617544 B = 4740.288396 C = 5391.782050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.167 3.833 3 C -0.153 4.153 4 N -0.604 5.604 5 C -0.254 4.254 6 H 0.078 0.922 7 C 0.033 3.967 8 N -0.904 5.904 9 Si 0.876 3.124 10 H -0.286 1.286 11 H -0.306 1.306 12 H -0.271 1.271 13 C 0.138 3.862 14 C -0.124 4.124 15 C -0.044 4.044 16 C -0.217 4.217 17 C 0.055 3.945 18 N -0.304 5.304 19 N -0.385 5.385 20 C 0.106 3.894 21 C 0.045 3.955 22 H 0.060 0.940 23 H 0.035 0.965 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.036 0.964 28 H 0.055 0.945 29 H 0.261 0.739 30 H 0.035 0.965 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.183 0.817 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.639 -2.278 -12.759 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.061 3.939 3 C -0.212 4.212 4 N -0.326 5.326 5 C -0.383 4.383 6 H 0.096 0.904 7 C -0.167 4.167 8 N -0.546 5.546 9 Si 0.707 3.293 10 H -0.214 1.214 11 H -0.234 1.234 12 H -0.196 1.196 13 C 0.012 3.988 14 C -0.164 4.164 15 C -0.084 4.084 16 C -0.228 4.228 17 C -0.131 4.131 18 N -0.126 5.126 19 N -0.168 5.168 20 C -0.036 4.036 21 C -0.100 4.100 22 H 0.079 0.921 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.200 0.800 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 11.912 -1.914 -12.352 17.267 hybrid contribution -1.015 -1.209 -0.312 1.609 sum 10.897 -3.124 -12.664 16.996 Atomic orbital electron populations 1.22130 0.97826 1.01279 0.99846 1.20358 0.92334 0.92193 0.89032 1.22164 1.00752 0.98443 0.99850 1.44258 1.52721 1.33213 1.02400 1.18679 1.42008 0.93075 0.84522 0.90401 1.25386 0.98711 0.97562 0.95026 1.69884 1.50884 1.35304 0.98521 0.86958 0.77663 0.86987 0.77661 1.21424 1.23444 1.19629 1.21211 0.89106 0.89988 0.98479 1.22128 0.95747 0.96411 1.02154 1.19967 0.88473 0.98293 1.01624 1.20262 0.98390 1.12409 0.91733 1.23875 0.90410 0.98616 1.00227 1.77297 1.22550 1.24013 0.88730 1.48384 1.10125 1.52966 1.05319 1.21756 0.88279 1.00713 0.92874 1.22260 0.85718 1.01923 1.00062 0.92137 0.94612 0.93533 0.93390 0.93441 0.94542 0.92549 0.92936 0.94685 0.93091 0.91313 0.93222 0.91486 0.92168 0.80028 0.91210 0.89758 0.89586 0.81312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.04 37.16 0.34 -2.56 16 2 C 0.17 3.31 3.36 -67.93 -0.23 3.08 16 3 C -0.15 -2.81 9.11 37.16 0.34 -2.47 16 4 N -0.60 -14.02 2.06 -165.66 -0.34 -14.36 16 5 C -0.25 -6.95 8.74 -15.06 -0.13 -7.08 16 6 H 0.08 2.32 7.17 -52.48 -0.38 1.94 16 7 C 0.03 0.93 5.31 -17.43 -0.09 0.84 16 8 N -0.90 -27.59 13.97 55.49 0.78 -26.82 16 9 Si 0.88 22.27 24.97 -169.99 -4.24 18.03 16 10 H -0.29 -7.02 6.66 56.52 0.38 -6.64 16 11 H -0.31 -7.98 7.11 56.52 0.40 -7.58 16 12 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 13 C 0.14 2.92 4.49 -4.04 -0.02 2.90 16 14 C -0.12 -2.33 5.52 -26.73 -0.15 -2.48 16 15 C -0.04 -0.69 5.70 -27.88 -0.16 -0.85 16 16 C -0.22 -3.29 5.35 -105.05 -0.56 -3.85 16 17 C 0.05 0.86 11.96 -17.36 -0.21 0.65 16 18 N -0.30 -4.84 12.58 30.62 0.39 -4.46 16 19 N -0.38 -5.06 4.01 -68.16 -0.27 -5.33 16 20 C 0.11 0.85 11.47 59.85 0.69 1.54 16 21 C 0.05 0.59 11.40 -17.22 -0.20 0.39 16 22 H 0.06 1.25 7.80 -51.93 -0.40 0.84 16 23 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.86 7.78 -51.93 -0.40 0.46 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 1.13 7.25 -51.93 -0.38 0.75 16 29 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.03 0.67 7.90 -51.93 -0.41 0.26 16 31 H 0.05 1.20 2.98 -51.93 -0.15 1.04 16 32 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.18 2.58 8.06 -52.49 -0.42 2.16 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 324.79 15.07 4.89 4.89 Total: -1.00 -32.43 324.79 -5.97 -38.40 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.78 Total: -0.47 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -0.38 Total: -9.89 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.54 Total: -50.97 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.24 Total: 18.03 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.43 -5.97 -38.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131459084.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.498 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds