Wall clock time and date at job start Mon Mar 30 2020 04:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47315 * 2 1 4 4 N 1.46500 * 109.46702 * 119.99897 * 2 1 3 5 5 C 1.36932 * 120.00189 * 301.89653 * 4 2 1 6 6 H 1.08003 * 120.00282 * 324.86021 * 5 4 2 7 7 C 1.38820 * 119.99954 * 144.86111 * 5 4 2 8 8 N 1.31623 * 119.99632 * 157.16692 * 7 5 4 9 9 Si 1.86800 * 120.00004 * 337.16915 * 7 5 4 10 10 H 1.48502 * 109.46927 * 95.35275 * 9 7 5 11 11 H 1.48498 * 109.46996 * 215.35517 * 9 7 5 12 12 H 1.48497 * 109.46956 * 335.35494 * 9 7 5 13 13 C 1.46502 * 119.99893 * 121.90279 * 4 2 1 14 14 C 1.53002 * 109.47189 * 89.99662 * 13 4 2 15 15 C 1.53004 * 109.46651 * 180.02562 * 14 13 4 16 16 C 1.50703 * 109.46549 * 179.97438 * 15 14 13 17 17 C 1.39870 * 126.03640 * 90.03077 * 16 15 14 18 18 N 1.30839 * 108.20315 * 179.97438 * 17 16 15 19 19 N 1.40083 * 108.20586 * 359.97438 * 18 17 16 20 20 C 1.46501 * 126.04231 * 179.97438 * 19 18 17 21 21 C 1.34958 * 107.92431 * 359.76203 * 19 18 17 22 22 H 1.09004 * 109.46876 * 305.33437 * 1 2 3 23 23 H 1.09007 * 109.47018 * 65.32737 * 1 2 3 24 24 H 1.08992 * 109.47608 * 185.32831 * 1 2 3 25 25 H 1.08995 * 109.47283 * 239.99980 * 2 1 3 26 26 H 1.08996 * 109.47149 * 175.19036 * 3 2 1 27 27 H 1.09005 * 109.47188 * 295.19004 * 3 2 1 28 28 H 1.09004 * 109.47434 * 55.18246 * 3 2 1 29 29 H 0.97003 * 119.99518 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.46990 * 329.99779 * 13 4 2 31 31 H 1.09001 * 109.47227 * 209.99686 * 13 4 2 32 32 H 1.09000 * 109.47059 * 60.00160 * 14 13 4 33 33 H 1.08999 * 109.47150 * 299.99594 * 14 13 4 34 34 H 1.08992 * 109.47501 * 300.00014 * 15 14 13 35 35 H 1.09000 * 109.47309 * 60.00251 * 15 14 13 36 36 H 1.07998 * 125.90149 * 359.97438 * 17 16 15 37 37 H 1.09001 * 109.46689 * 89.98011 * 20 19 18 38 38 H 1.08997 * 109.47647 * 209.97757 * 20 19 18 39 39 H 1.09001 * 109.47084 * 329.98633 * 20 19 18 40 40 H 1.07995 * 126.12921 * 180.24074 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6557 -0.2459 2.4395 6 1 1.5323 0.8118 2.6200 7 6 1.4467 -1.1545 3.4680 8 7 1.5441 -0.7638 4.7211 9 14 1.0271 -2.9315 3.0735 10 1 2.2672 -3.7484 3.0906 11 1 0.0769 -3.4528 4.0886 12 1 0.4039 -3.0059 1.7277 13 6 2.8946 -1.8570 1.0622 14 6 4.3542 -1.3988 1.0432 15 6 5.2693 -2.6169 0.9027 16 6 6.7070 -2.1655 0.8833 17 6 7.5374 -2.0156 1.9988 18 7 8.7097 -1.6088 1.5838 19 7 8.6624 -1.4875 0.1890 20 6 9.7636 -1.0584 -0.6767 21 6 7.4246 -1.8402 -0.2168 22 1 -0.3633 0.5944 0.8384 23 1 -0.3633 0.4290 -0.9339 24 1 -0.3634 -1.0231 0.0954 25 1 1.8934 -0.5138 -0.8899 26 1 3.1266 1.4436 0.0862 27 1 1.7488 1.9308 -0.9300 28 1 1.6080 1.9807 0.8437 29 1 1.3977 -1.3986 5.4398 30 1 2.6654 -2.3787 0.1331 31 1 2.7358 -2.5295 1.9053 32 1 4.5834 -0.8770 1.9724 33 1 4.5130 -0.7264 0.2002 34 1 5.1106 -3.2897 1.7454 35 1 5.0400 -3.1383 -0.0267 36 1 7.2591 -2.2031 3.0253 37 1 10.3424 -1.9286 -0.9864 38 1 9.3600 -0.5585 -1.5572 39 1 10.4077 -0.3692 -0.1307 40 1 7.0694 -1.8570 -1.2366 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131459084.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:34 Heat of formation + Delta-G solvation = 70.990600 kcal Electronic energy + Delta-G solvation = -18701.552480 eV Core-core repulsion = 15938.902127 eV Total energy + Delta-G solvation = -2762.650353 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.06780 -38.71670 -35.64214 -34.23559 -33.75679 -32.14650 -30.23985 -28.08179 -27.76765 -26.39235 -24.91046 -22.65865 -21.96878 -21.15292 -20.91045 -18.35490 -17.58041 -17.15089 -16.46365 -16.27618 -15.64937 -15.25373 -14.98398 -14.81869 -14.42406 -14.12105 -13.88623 -13.75362 -13.59890 -13.36468 -13.16392 -12.98530 -12.78972 -12.56160 -12.31750 -12.17796 -12.07570 -11.87477 -11.65028 -11.36716 -11.30825 -11.07173 -10.47839 -10.32242 -9.25159 -8.64284 -8.09409 -5.42094 0.97940 1.34898 1.45404 1.56087 1.75407 1.85605 2.50263 3.14247 3.44451 3.69896 4.04175 4.22500 4.31214 4.34094 4.39629 4.46454 4.55624 4.61928 4.69526 4.70276 4.73546 4.86594 4.92099 4.96354 5.00845 5.10079 5.13855 5.18178 5.18711 5.22669 5.56098 5.59371 5.64606 5.66296 5.73992 6.06654 6.22535 6.29360 6.74889 7.12539 7.79505 8.18564 9.11395 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.021997 B = 0.005905 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.617544 B = 4740.288396 C = 5391.782050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.157 3.843 3 C -0.144 4.144 4 N -0.615 5.615 5 C -0.231 4.231 6 H 0.039 0.961 7 C -0.027 4.027 8 N -0.957 5.957 9 Si 0.939 3.061 10 H -0.274 1.274 11 H -0.319 1.319 12 H -0.257 1.257 13 C 0.130 3.870 14 C -0.108 4.108 15 C -0.032 4.032 16 C -0.246 4.246 17 C 0.033 3.967 18 N -0.338 5.338 19 N -0.383 5.383 20 C 0.094 3.906 21 C 0.063 3.937 22 H 0.031 0.969 23 H 0.074 0.926 24 H 0.036 0.964 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.025 0.975 29 H 0.258 0.742 30 H 0.069 0.931 31 H 0.028 0.972 32 H 0.024 0.976 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.179 0.821 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.369 -3.243 -16.902 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.052 3.948 3 C -0.203 4.203 4 N -0.338 5.338 5 C -0.361 4.361 6 H 0.056 0.944 7 C -0.222 4.222 8 N -0.603 5.603 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.249 1.249 12 H -0.181 1.181 13 C 0.005 3.995 14 C -0.148 4.148 15 C -0.072 4.072 16 C -0.257 4.257 17 C -0.152 4.152 18 N -0.160 5.160 19 N -0.165 5.165 20 C -0.046 4.046 21 C -0.084 4.084 22 H 0.050 0.950 23 H 0.093 0.907 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.196 0.804 37 H 0.107 0.893 38 H 0.134 0.866 39 H 0.104 0.896 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 12.672 -2.879 -16.547 21.040 hybrid contribution -1.152 -0.770 0.853 1.627 sum 11.520 -3.649 -15.695 19.808 Atomic orbital electron populations 1.22066 0.97305 1.00404 1.00729 1.20669 0.92842 0.92724 0.88554 1.22059 1.00043 0.97707 1.00524 1.44443 1.53531 1.33873 1.01985 1.18498 1.39773 0.91371 0.86433 0.94367 1.25961 0.99773 1.01738 0.94743 1.70022 1.53876 1.36744 0.99629 0.85917 0.77408 0.82290 0.77405 1.20120 1.24852 1.18107 1.21360 0.90020 0.89061 0.99033 1.21897 0.95005 0.97622 1.00299 1.19808 0.88239 0.96567 1.02550 1.20297 0.98368 1.14679 0.92384 1.24010 0.91055 0.99335 1.00798 1.77227 1.22792 1.25154 0.90848 1.48822 1.11366 1.51626 1.04714 1.22186 0.87501 1.01858 0.93039 1.22821 0.85077 0.99345 1.01115 0.94982 0.90719 0.94524 0.90002 0.94060 0.90793 0.95534 0.93334 0.91246 0.95449 0.95733 0.91998 0.92832 0.89192 0.80422 0.89347 0.86613 0.89573 0.77285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.23 9.04 71.98 0.65 -4.58 16 2 C 0.16 5.78 3.36 44.99 0.15 5.93 16 3 C -0.14 -5.02 9.11 71.98 0.66 -4.37 16 4 N -0.62 -27.94 2.06 -678.03 -1.40 -29.34 16 5 C -0.23 -12.95 8.74 84.04 0.73 -12.22 16 6 H 0.04 2.42 7.17 -2.91 -0.02 2.40 16 7 C -0.03 -1.61 5.31 84.86 0.45 -1.15 16 8 N -0.96 -61.17 13.97 21.65 0.30 -60.87 16 9 Si 0.94 46.81 24.97 68.60 1.71 48.53 16 10 H -0.27 -12.95 6.66 99.48 0.66 -12.28 16 11 H -0.32 -16.41 7.11 99.48 0.71 -15.70 16 12 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 13 C 0.13 5.23 4.49 86.38 0.39 5.62 16 14 C -0.11 -3.91 5.52 30.60 0.17 -3.74 16 15 C -0.03 -0.95 5.70 29.85 0.17 -0.78 16 16 C -0.25 -7.06 5.35 -20.14 -0.11 -7.17 16 17 C 0.03 1.04 11.96 85.24 1.02 2.06 16 18 N -0.34 -10.58 12.58 -57.02 -0.72 -11.30 16 19 N -0.38 -9.08 4.01 -369.56 -1.48 -10.57 16 20 C 0.09 1.20 11.47 127.77 1.47 2.66 16 21 C 0.06 1.42 11.40 83.54 0.95 2.37 16 22 H 0.03 1.29 7.80 -2.38 -0.02 1.28 16 23 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 24 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.08 2.51 7.78 -2.39 -0.02 2.49 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.03 1.05 7.25 -2.38 -0.02 1.03 16 29 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 30 H 0.07 2.34 7.90 -2.39 -0.02 2.32 16 31 H 0.03 1.25 2.98 -2.39 -0.01 1.24 16 32 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.18 5.41 8.06 -2.91 -0.02 5.39 16 37 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.21 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -73.97 324.79 6.06 -67.91 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.94 Total: 10.99 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 6.70 Total: -15.36 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -3.30 Total: -112.08 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.71 Total: 48.53 kcal Total: -73.97 6.06 -67.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131459084.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.904 kcal (2) G-P(sol) polarization free energy of solvation -73.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds