Wall clock time and date at job start Mon Mar 30 2020 04:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86803 * 119.99608 * 2 1 4 4 H 1.48494 * 109.46914 * 274.98085 * 3 2 1 5 5 H 1.48496 * 109.47574 * 34.98413 * 3 2 1 6 6 H 1.48503 * 109.46839 * 154.98607 * 3 2 1 7 7 C 1.40065 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00500 * 186.53239 * 7 2 1 9 9 C 1.39917 * 119.99708 * 6.52908 * 7 2 1 10 10 C 1.38280 * 125.40918 * 173.39754 * 9 7 2 11 11 C 1.36803 * 114.20451 * 180.02562 * 10 9 7 12 12 C 1.34534 * 115.33776 * 0.02562 * 11 10 9 13 13 S 1.76207 * 124.92486 * 179.97438 * 12 11 10 14 14 O 1.42098 * 106.40353 * 203.53841 * 13 12 11 15 15 O 1.42099 * 106.40465 * 336.46599 * 13 12 11 16 16 Cl 2.02004 * 107.21488 * 90.00407 * 13 12 11 17 17 S 1.75797 * 110.15041 * 0.02562 * 12 11 10 18 18 H 0.97003 * 119.99733 * 0.02562 * 1 2 3 19 19 H 1.08001 * 122.89929 * 0.26863 * 10 9 7 20 20 H 1.07997 * 122.33455 * 179.97438 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3848 2.1072 -1.3947 5 1 1.4968 2.6201 0.8027 6 1 3.5890 1.4121 0.5920 7 6 2.0092 -1.2129 0.0005 8 1 3.0839 -1.2159 0.1069 9 6 1.3165 -2.4208 -0.1367 10 6 1.8990 -3.6667 -0.2801 11 6 1.0036 -4.6944 -0.3970 12 6 -0.2925 -4.3363 -0.3552 13 16 -1.6516 -5.4506 -0.4823 14 8 -2.7568 -4.6848 -0.9417 15 8 -1.1660 -6.5999 -1.1624 16 17 -2.1117 -6.0486 1.3915 17 16 -0.4337 -2.5953 -0.1567 18 1 -0.4850 0.8401 -0.0004 19 1 2.9685 -3.8161 -0.2945 20 1 1.3154 -5.7215 -0.5155 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133908004.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:25 Heat of formation + Delta-G solvation = -101.665844 kcal Electronic energy + Delta-G solvation = -12072.205348 eV Core-core repulsion = 9511.797151 eV Total energy + Delta-G solvation = -2560.408197 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 251.947 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.67502 -38.00157 -37.37316 -36.93209 -36.13135 -31.46597 -27.62640 -24.37536 -21.33157 -20.59258 -20.25247 -18.82707 -18.18414 -17.32447 -16.46463 -16.20014 -15.19523 -14.28071 -13.97578 -13.84063 -13.63390 -13.52827 -13.27711 -13.13643 -12.92409 -12.86171 -12.83997 -12.51821 -11.99114 -11.85955 -11.54434 -11.08408 -9.95907 -9.20350 -8.97435 -6.97833 -1.91275 0.25138 1.27206 1.34553 1.36994 1.53049 1.60184 1.78880 2.00675 2.07165 2.22989 2.82577 3.15577 4.51280 4.67587 4.94647 5.23891 5.38640 5.74170 5.80244 6.16997 6.22307 7.66331 Molecular weight = 251.95amu Principal moments of inertia in cm(-1) A = 0.048696 B = 0.007011 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.852704 B = 3992.702995 C = 4189.318752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.004 3.996 3 Si 1.024 2.976 4 H -0.257 1.257 5 H -0.261 1.261 6 H -0.241 1.241 7 C -0.318 4.318 8 H 0.134 0.866 9 C 0.007 3.993 10 C -0.321 4.321 11 C 0.035 3.965 12 C -0.934 4.934 13 S 2.493 3.507 14 O -0.917 6.917 15 O -0.916 6.916 16 Cl -0.533 7.533 17 S 0.164 5.836 18 H 0.324 0.676 19 H 0.138 0.862 20 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.472 3.390 0.940 4.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.221 4.221 3 Si 0.840 3.160 4 H -0.181 1.181 5 H -0.185 1.185 6 H -0.163 1.163 7 C -0.356 4.356 8 H 0.152 0.848 9 C -0.116 4.116 10 C -0.347 4.347 11 C 0.006 3.994 12 C -1.150 5.150 13 S 2.601 3.399 14 O -0.916 6.916 15 O -0.914 6.914 16 Cl -0.531 7.531 17 S 0.419 5.581 18 H 0.139 0.861 19 H 0.156 0.844 20 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.227 3.659 0.980 3.982 hybrid contribution 1.610 -0.337 -0.105 1.648 sum 2.837 3.322 0.875 4.456 Atomic orbital electron populations 1.68833 1.09792 1.34382 1.25378 1.27702 0.95915 1.06931 0.91529 0.84494 0.79053 0.72303 0.80165 1.18082 1.18471 1.16342 1.20396 0.98212 0.88931 1.28023 0.84822 1.22736 0.96154 0.97353 0.95378 1.20469 0.99860 0.91317 1.23037 1.19331 0.90074 0.99697 0.90345 1.33495 1.14406 1.14824 1.52280 1.07919 0.76270 0.75853 0.79844 1.93580 1.52360 1.70543 1.75068 1.93560 1.81403 1.49594 1.66835 1.99014 1.95538 1.94143 1.64422 1.84632 1.04767 0.92097 1.76559 0.86115 0.84406 0.84966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -30.77 10.70 21.86 0.23 -30.53 14 2 C 0.00 0.14 5.49 85.28 0.47 0.61 14 3 Si 1.02 26.60 29.57 68.60 2.03 28.63 14 4 H -0.26 -6.60 7.11 99.48 0.71 -5.90 14 5 H -0.26 -6.56 7.11 99.48 0.71 -5.85 14 6 H -0.24 -5.84 7.11 99.48 0.71 -5.13 14 7 C -0.32 -12.88 9.28 23.12 0.21 -12.66 14 8 H 0.13 4.68 7.86 -2.91 -0.02 4.65 14 9 C 0.01 0.34 6.18 22.69 0.14 0.48 14 10 C -0.32 -13.92 10.20 21.94 0.22 -13.69 14 11 C 0.04 1.54 9.79 21.08 0.21 1.74 14 12 C -0.93 -42.79 6.53 66.97 0.44 -42.36 14 13 S 2.49 107.11 6.21 -56.49 -0.35 106.76 14 14 O -0.92 -42.55 17.86 -128.00 -2.29 -44.83 14 15 O -0.92 -40.48 17.76 -128.00 -2.27 -42.75 14 16 Cl -0.53 -21.32 29.68 -2.72 -0.08 -21.40 14 17 S 0.16 7.84 20.16 -56.49 -1.14 6.70 14 18 H 0.32 11.37 8.30 -92.71 -0.77 10.60 14 19 H 0.14 5.23 8.06 -2.91 -0.02 5.20 14 20 H 0.13 5.13 8.05 -2.91 -0.02 5.10 14 Total: -1.00 -53.74 232.98 -0.89 -54.63 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 1.28 Total: 8.68 kcal Atomic # 6 Polarization: -67.57 SS G_CDS: 1.69 Total: -65.88 kcal Atomic # 7 Polarization: -30.77 SS G_CDS: 0.23 Total: -30.53 kcal Atomic # 8 Polarization: -83.03 SS G_CDS: -4.56 Total: -87.58 kcal Atomic # 14 Polarization: 26.60 SS G_CDS: 2.03 Total: 28.63 kcal Atomic # 16 Polarization: 114.95 SS G_CDS: -1.49 Total: 113.46 kcal Atomic # 17 Polarization: -21.32 SS G_CDS: -0.08 Total: -21.40 kcal Total: -53.74 -0.89 -54.63 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133908004.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.034 kcal (2) G-P(sol) polarization free energy of solvation -53.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds