Wall clock time and date at job start Mon Mar 30 2020 04:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39870 * 125.90162 * 2 1 4 4 C 1.35314 * 107.92091 * 179.71734 * 3 2 1 5 5 C 1.50700 * 126.13000 * 180.26421 * 4 3 2 6 6 N 1.34945 * 107.74745 * 0.42181 * 4 3 2 7 7 C 1.46505 * 126.04001 * 179.83357 * 6 4 3 8 8 C 1.52991 * 109.47505 * 269.71976 * 7 6 4 9 9 C 1.53002 * 109.47310 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47317 * 179.97438 * 9 8 7 11 11 C 1.46896 * 110.99913 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.47220 * 325.00418 * 11 10 9 13 13 C 1.52997 * 109.46848 * 85.00348 * 11 10 9 14 14 C 1.50701 * 109.47239 * 205.00362 * 11 10 9 15 15 H 1.07999 * 119.99742 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00221 * 180.02562 * 14 11 10 17 17 N 1.31519 * 119.99615 * 359.97438 * 16 14 11 18 18 Si 1.86792 * 119.99983 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.47285 * 89.99870 * 18 16 14 20 20 H 1.48503 * 109.47250 * 209.99665 * 18 16 14 21 21 H 1.48499 * 109.47267 * 329.99827 * 18 16 14 22 22 N 1.30834 * 125.89874 * 179.97438 * 2 1 3 23 23 H 1.09003 * 109.47071 * 270.00207 * 1 2 3 24 24 H 1.09002 * 109.46702 * 29.99483 * 1 2 3 25 25 H 1.09001 * 109.47341 * 149.99666 * 1 2 3 26 26 H 1.08003 * 126.04036 * 359.97438 * 3 2 1 27 27 H 1.08999 * 109.47213 * 270.19070 * 5 4 3 28 28 H 1.09005 * 109.47216 * 30.18929 * 5 4 3 29 29 H 1.09000 * 109.47486 * 150.18747 * 5 4 3 30 30 H 1.08998 * 109.46761 * 149.71788 * 7 6 4 31 31 H 1.09000 * 109.46692 * 29.72780 * 7 6 4 32 32 H 1.09010 * 109.46986 * 59.99929 * 8 7 6 33 33 H 1.09000 * 109.47463 * 300.00550 * 8 7 6 34 34 H 1.09007 * 109.46416 * 59.99998 * 9 8 7 35 35 H 1.08990 * 109.47033 * 300.00695 * 9 8 7 36 36 H 1.00896 * 111.00002 * 303.96348 * 10 9 8 37 37 H 1.08998 * 109.47533 * 179.97438 * 13 11 10 38 38 H 1.08996 * 109.47853 * 300.00000 * 13 11 10 39 39 H 1.09002 * 109.47153 * 60.00028 * 13 11 10 40 40 H 0.96997 * 119.99545 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7153 0.0064 5 6 4.8351 1.5987 0.0143 6 7 3.6087 -0.6341 0.0008 7 6 4.7899 -1.5009 0.0012 8 6 5.2018 -1.8024 -1.4411 9 6 6.4357 -2.7071 -1.4406 10 7 6.8308 -2.9971 -2.8254 11 6 8.0147 -3.8658 -2.8641 12 1 8.6742 -3.6187 -2.0321 13 6 7.5782 -5.3279 -2.7519 14 6 8.7476 -3.6588 -4.1645 15 1 8.3716 -2.9521 -4.8896 16 6 9.8979 -4.3714 -4.4287 17 7 10.3559 -5.2316 -3.5455 18 14 10.8058 -4.1152 -6.0409 19 1 11.8101 -3.0336 -5.8771 20 1 11.4925 -5.3738 -6.4278 21 1 9.8366 -3.7345 -7.0997 22 7 2.2741 -1.0598 0.0005 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8901 -0.5138 25 1 -0.3634 -0.8899 -0.5139 26 1 1.9924 2.1598 -0.0004 27 1 5.1330 1.8160 -1.0114 28 1 4.6059 2.5306 0.5312 29 1 5.6494 1.0886 0.5289 30 1 4.5560 -2.4334 0.5148 31 1 5.6090 -0.9984 0.5156 32 1 5.4357 -0.8698 -1.9547 33 1 4.3826 -2.3048 -1.9555 34 1 6.2021 -3.6397 -0.9268 35 1 7.2546 -2.2043 -0.9263 36 1 6.0661 -3.4052 -3.3417 37 1 8.4565 -5.9727 -2.7810 38 1 7.0482 -5.4778 -1.8113 39 1 6.9188 -5.5751 -3.5839 40 1 11.1654 -5.7327 -3.7312 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219411946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:55 Heat of formation + Delta-G solvation = 57.144207 kcal Electronic energy + Delta-G solvation = -17917.316234 eV Core-core repulsion = 15154.065456 eV Total energy + Delta-G solvation = -2763.250778 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.28069 -36.67562 -34.80470 -33.02162 -32.10216 -30.96719 -28.94123 -27.16750 -26.87224 -25.16195 -23.88234 -21.30254 -20.44350 -20.19727 -19.22558 -16.66752 -16.23074 -15.39730 -15.33368 -14.72587 -14.30748 -13.89138 -13.70259 -13.48948 -13.38188 -13.07245 -12.77487 -12.67938 -12.52394 -12.01861 -11.88810 -11.78914 -11.52492 -11.26877 -10.96194 -10.86954 -10.66427 -10.50515 -10.36036 -10.13834 -9.88768 -9.08285 -8.99162 -8.47525 -8.37460 -7.27970 -5.99909 -4.03286 1.86876 2.49414 2.74896 3.32050 3.38144 3.42613 4.42159 4.46494 4.55038 4.83109 4.93071 4.97224 5.22422 5.26502 5.31695 5.38627 5.47646 5.48555 5.51714 5.60814 5.68714 5.76847 5.80002 5.87102 6.00214 6.18083 6.34351 6.42804 6.67219 6.69349 6.82545 7.05642 7.07607 7.33799 7.72179 7.77669 7.86784 8.25220 8.49969 8.59390 9.03993 9.62213 11.07223 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.038767 B = 0.003455 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.085219 B = 8103.145961 C = 8321.569917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.065 3.935 3 C -0.281 4.281 4 C 0.088 3.912 5 C -0.094 4.094 6 N -0.362 5.362 7 C 0.131 3.869 8 C -0.130 4.130 9 C 0.064 3.936 10 N -0.684 5.684 11 C 0.211 3.789 12 H 0.033 0.967 13 C -0.169 4.169 14 C -0.496 4.496 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.274 1.274 22 N -0.297 5.297 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.143 0.857 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.021 0.979 35 H 0.066 0.934 36 H 0.326 0.674 37 H 0.089 0.911 38 H 0.005 0.995 39 H 0.028 0.972 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.014 11.357 8.878 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 C -0.310 4.310 4 C -0.040 4.040 5 C -0.152 4.152 6 N -0.144 5.144 7 C 0.010 3.990 8 C -0.169 4.169 9 C -0.067 4.067 10 N -0.314 5.314 11 C 0.104 3.896 12 H 0.051 0.949 13 C -0.229 4.229 14 C -0.535 4.535 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.199 1.199 22 N -0.120 5.120 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.161 0.839 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.039 0.961 35 H 0.085 0.915 36 H 0.142 0.858 37 H 0.108 0.892 38 H 0.024 0.976 39 H 0.047 0.953 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.317 10.442 8.834 19.090 hybrid contribution 0.230 -0.018 -0.561 0.607 sum -13.087 10.424 8.273 18.665 Atomic orbital electron populations 1.20132 0.86982 1.03092 1.02629 1.22276 0.96811 0.90933 1.00049 1.21055 0.91015 0.99550 1.19380 1.21136 0.97316 0.84857 1.00702 1.20479 0.93065 0.97981 1.03705 1.48660 1.05339 1.04092 1.56305 1.21777 0.83324 0.94575 0.99337 1.21964 0.98846 1.01723 0.94333 1.21774 0.95240 0.96540 0.93101 1.60800 1.08946 1.51924 1.09727 1.19176 0.86520 0.86229 0.97718 0.94890 1.22434 1.01495 1.03021 0.95925 1.21168 1.07892 1.22078 1.02342 0.91946 1.24959 0.97327 0.95237 0.97062 1.69885 1.22767 1.26272 1.34874 0.86494 0.79771 0.77352 0.83746 1.20746 1.21396 1.19917 1.77319 0.86473 1.22735 1.25472 0.90833 0.90649 0.91086 0.83950 0.89863 0.89863 0.90962 0.88887 0.88882 0.90759 0.91500 0.96092 0.91537 0.85803 0.89214 0.97628 0.95328 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.45 36.00 0.38 -0.25 16 2 C 0.07 0.84 7.22 -82.41 -0.59 0.24 16 3 C -0.28 -3.34 10.65 -40.01 -0.43 -3.77 16 4 C 0.09 1.07 6.93 -82.27 -0.57 0.50 16 5 C -0.09 -0.82 10.12 36.01 0.36 -0.46 16 6 N -0.36 -5.00 3.61 -57.14 -0.21 -5.21 16 7 C 0.13 1.63 6.25 -4.04 -0.03 1.61 16 8 C -0.13 -1.87 5.80 -26.73 -0.16 -2.02 16 9 C 0.06 1.10 5.48 -3.82 -0.02 1.07 16 10 N -0.68 -14.46 6.23 -107.95 -0.67 -15.13 16 11 C 0.21 5.30 2.57 -68.87 -0.18 5.13 16 12 H 0.03 0.90 7.80 -51.93 -0.41 0.50 16 13 C -0.17 -4.10 8.94 37.16 0.33 -3.77 16 14 C -0.50 -13.80 8.84 -34.44 -0.30 -14.10 16 15 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 16 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 17 N -0.90 -25.73 11.32 55.43 0.63 -25.11 16 18 Si 0.90 21.54 29.54 -169.99 -5.02 16.51 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 N -0.30 -4.52 12.58 33.67 0.42 -4.10 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.59 7.08 -51.93 -0.37 0.22 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.09 0.96 7.04 -51.93 -0.37 0.59 16 32 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.02 0.36 7.43 -51.93 -0.39 -0.03 16 35 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 36 H 0.33 6.65 8.47 -39.29 -0.33 6.32 16 37 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 38 H 0.00 0.10 7.45 -51.93 -0.39 -0.28 16 39 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 329.99 15.07 4.97 4.97 Total: -1.00 -31.10 329.99 -7.92 -39.02 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.75 Total: 3.43 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -1.30 Total: -14.39 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.17 Total: -49.55 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.10 -7.92 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219411946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.162 kcal (2) G-P(sol) polarization free energy of solvation -31.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds