Wall clock time and date at job start Mon Mar 30 2020 04:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46939 * 2 1 4 4 N 1.46903 * 109.47263 * 119.99480 * 2 1 3 5 5 C 1.46904 * 110.99603 * 92.16805 * 4 2 1 6 6 C 1.50707 * 109.46752 * 72.45270 * 5 4 2 7 7 H 1.07990 * 120.00108 * 5.03004 * 6 5 4 8 8 C 1.37880 * 119.99302 * 185.02793 * 6 5 4 9 9 N 1.31510 * 120.00485 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99534 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47433 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47237 * 120.00164 * 10 8 6 13 13 H 1.48503 * 109.47215 * 240.00097 * 10 8 6 14 14 C 1.46897 * 110.99895 * 328.21676 * 4 2 1 15 15 C 1.52996 * 109.47217 * 292.90836 * 14 4 2 16 16 C 1.50702 * 109.47116 * 185.62867 * 15 14 4 17 17 C 1.39873 * 126.03611 * 90.03027 * 16 15 14 18 18 N 1.30838 * 108.20071 * 179.97438 * 17 16 15 19 19 N 1.40081 * 108.20748 * 359.97438 * 18 17 16 20 20 C 1.46501 * 126.04108 * 180.02562 * 19 18 17 21 21 C 1.34953 * 107.92624 * 359.75957 * 19 18 17 22 22 H 1.08992 * 109.47204 * 298.63254 * 1 2 3 23 23 H 1.08994 * 109.46848 * 58.63858 * 1 2 3 24 24 H 1.09004 * 109.46369 * 178.63458 * 1 2 3 25 25 H 1.08998 * 109.47200 * 240.00158 * 2 1 3 26 26 H 1.08997 * 109.46977 * 187.22636 * 3 2 1 27 27 H 1.08998 * 109.46775 * 307.22747 * 3 2 1 28 28 H 1.08993 * 109.46972 * 67.22188 * 3 2 1 29 29 H 1.08996 * 109.46930 * 192.45428 * 5 4 2 30 30 H 1.09001 * 109.47154 * 312.45529 * 5 4 2 31 31 H 0.97000 * 119.99880 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.47171 * 52.91842 * 14 4 2 33 33 H 1.09005 * 109.46520 * 172.91113 * 14 4 2 34 34 H 1.08997 * 109.47479 * 305.63632 * 15 14 4 35 35 H 1.09001 * 109.46852 * 65.63070 * 15 14 4 36 36 H 1.08001 * 125.89624 * 359.97438 * 17 16 15 37 37 H 1.08995 * 109.47205 * 89.97418 * 20 19 18 38 38 H 1.08999 * 109.47065 * 209.97665 * 20 19 18 39 39 H 1.09000 * 109.46310 * 329.97633 * 20 19 18 40 40 H 1.07999 * 126.13532 * 180.24175 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.2441 -2.1188 0.9292 6 6 3.4694 -2.2799 0.0666 7 1 4.0718 -1.4187 -0.1819 8 6 3.8211 -3.5268 -0.4053 9 7 3.0872 -4.5753 -0.1030 10 14 5.3402 -3.7266 -1.4739 11 1 5.9873 -2.4039 -1.6667 12 1 6.2933 -4.6526 -0.8111 13 1 4.9473 -4.2819 -2.7939 14 6 1.0961 -0.5092 2.3270 15 6 1.0993 0.9596 2.7554 16 6 0.2601 1.1227 3.9965 17 6 0.7141 1.0232 5.3157 18 7 -0.3026 1.2253 6.1141 19 7 -1.4372 1.4607 5.3270 20 6 -2.7887 1.7332 5.8226 21 6 -1.0644 1.3979 4.0315 22 1 -0.3633 0.4924 0.9019 23 1 -0.3633 0.5348 -0.8775 24 1 -0.3632 -1.0275 -0.0245 25 1 1.8934 -0.5138 -0.8900 26 1 3.1223 1.4453 -0.1293 27 1 1.5749 1.9923 -0.8183 28 1 1.7860 1.9177 0.9475 29 1 2.3903 -2.6484 1.8706 30 1 1.3783 -2.5310 0.4110 31 1 3.3349 -5.4526 -0.4347 32 1 0.0898 -0.7969 2.0228 33 1 1.4151 -1.1321 3.1628 34 1 2.1215 1.2751 2.9639 35 1 0.6862 1.5725 1.9543 36 1 1.7286 0.8155 5.6223 37 1 -2.9186 2.8077 5.9514 38 1 -3.5205 1.3622 5.1050 39 1 -2.9323 1.2324 6.7800 40 1 -1.7081 1.5391 3.1760 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226227762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:14 Heat of formation + Delta-G solvation = 86.282846 kcal Electronic energy + Delta-G solvation = -18675.879640 eV Core-core repulsion = 15913.892408 eV Total energy + Delta-G solvation = -2761.987232 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.11204 -38.05424 -33.75310 -32.83431 -31.82922 -30.72828 -28.74120 -26.97911 -26.52665 -25.38579 -22.29735 -21.89344 -21.02150 -19.90751 -18.78385 -16.75277 -16.13379 -15.56053 -15.42923 -14.76483 -14.35149 -14.23158 -13.37587 -13.27627 -13.23051 -12.79814 -12.64005 -12.30694 -12.21607 -12.08376 -11.77374 -11.44957 -11.33269 -10.87919 -10.76888 -10.66251 -10.53568 -10.28058 -10.17849 -9.70942 -9.53003 -9.35583 -9.16073 -8.37775 -8.19484 -7.08352 -5.96389 -3.97253 1.93650 2.54985 2.92370 3.34463 3.41966 3.47303 4.46323 4.49555 4.86873 4.96068 4.99817 5.16036 5.21385 5.38186 5.47839 5.61110 5.67617 5.77085 5.83611 5.98871 6.01242 6.11196 6.20157 6.25191 6.33888 6.37792 6.54132 6.64348 6.71423 6.76460 6.94111 6.98193 7.07542 7.39100 7.47364 7.75866 7.92118 8.22373 8.33318 8.66245 9.12735 9.67057 11.13987 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.033085 B = 0.004551 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.096789 B = 6151.272943 C = 6440.832364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.080 3.920 3 C -0.149 4.149 4 N -0.530 5.530 5 C 0.192 3.808 6 C -0.501 4.501 7 H 0.064 0.936 8 C 0.053 3.947 9 N -0.901 5.901 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.286 1.286 14 C 0.057 3.943 15 C -0.046 4.046 16 C -0.220 4.220 17 C 0.054 3.946 18 N -0.304 5.304 19 N -0.384 5.384 20 C 0.105 3.895 21 C 0.047 3.953 22 H 0.058 0.942 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.084 0.916 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.024 0.976 30 H -0.005 1.005 31 H 0.259 0.741 32 H 0.029 0.971 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.183 0.817 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.536 13.150 6.731 18.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.030 4.030 3 C -0.207 4.207 4 N -0.254 5.254 5 C 0.067 3.933 6 C -0.540 4.540 7 H 0.082 0.918 8 C -0.147 4.147 9 N -0.541 5.541 10 Si 0.723 3.277 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.071 4.071 15 C -0.084 4.084 16 C -0.232 4.232 17 C -0.132 4.132 18 N -0.126 5.126 19 N -0.167 5.167 20 C -0.037 4.037 21 C -0.098 4.098 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.102 0.898 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.042 0.958 30 H 0.013 0.987 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.200 0.800 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -10.640 13.254 8.102 18.829 hybrid contribution 0.156 -0.798 -1.653 1.843 sum -10.484 12.456 6.449 17.511 Atomic orbital electron populations 1.22516 0.98987 1.01379 1.00986 1.21563 0.91244 0.94838 0.95315 1.22136 1.01424 0.96186 1.00908 1.62262 1.43504 1.15960 1.03715 1.19740 0.95965 0.81318 0.96290 1.21241 1.09529 0.93436 1.29758 0.91780 1.24996 0.97063 0.95963 0.96719 1.69972 1.38888 0.99110 1.46103 0.86484 0.83036 0.78134 0.80031 1.19629 1.21106 1.21242 1.22120 0.95103 0.95109 0.94798 1.20333 0.98578 0.97441 0.92065 1.20320 0.93827 1.12994 0.96078 1.23870 0.98570 0.99321 0.91428 1.77300 0.92243 1.23738 1.19307 1.48397 1.08180 1.55863 1.04220 1.21773 0.78348 1.01982 1.01601 1.22304 0.96628 1.03159 0.87726 0.92273 0.93436 0.93059 0.89756 0.92571 0.94060 0.91848 0.95833 0.98747 0.93115 0.95292 0.91916 0.90468 0.90676 0.80019 0.91130 0.89716 0.89554 0.81350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 7.86 37.16 0.29 -2.61 16 2 C 0.08 1.50 2.64 -67.71 -0.18 1.32 16 3 C -0.15 -2.36 9.17 37.16 0.34 -2.01 16 4 N -0.53 -11.18 4.34 -228.07 -0.99 -12.17 16 5 C 0.19 5.01 4.66 -4.97 -0.02 4.98 16 6 C -0.50 -14.11 8.36 -34.44 -0.29 -14.39 16 7 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 8 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 9 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 10 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.06 1.03 4.42 -3.83 -0.02 1.01 16 15 C -0.05 -0.66 4.01 -27.88 -0.11 -0.77 16 16 C -0.22 -3.03 5.35 -105.05 -0.56 -3.59 16 17 C 0.05 0.76 11.96 -17.36 -0.21 0.55 16 18 N -0.30 -4.43 12.58 30.63 0.39 -4.05 16 19 N -0.38 -4.66 4.01 -68.16 -0.27 -4.94 16 20 C 0.10 0.77 11.47 59.85 0.69 1.46 16 21 C 0.05 0.57 11.40 -17.22 -0.20 0.37 16 22 H 0.06 0.85 4.78 -51.93 -0.25 0.60 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.91 7.76 -51.93 -0.40 0.51 16 25 H 0.08 1.84 7.07 -51.93 -0.37 1.47 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.92 4.38 -51.93 -0.23 0.69 16 29 H 0.02 0.66 7.78 -51.93 -0.40 0.26 16 30 H -0.01 -0.15 7.83 -51.93 -0.41 -0.56 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.03 0.52 5.81 -51.93 -0.30 0.22 16 33 H 0.06 1.20 7.83 -51.93 -0.41 0.79 16 34 H 0.08 1.16 8.06 -51.93 -0.42 0.74 16 35 H 0.08 1.03 4.32 -51.93 -0.22 0.80 16 36 H 0.18 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.17 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 318.53 15.07 4.80 4.80 Total: -1.00 -32.22 318.53 -7.06 -39.28 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.33 Total: -1.17 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -0.36 Total: -12.27 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.14 Total: -47.41 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.22 -7.06 -39.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226227762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.560 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds