Wall clock time and date at job start Mon Mar 30 2020 04:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46939 * 2 1 4 4 N 1.46903 * 109.47263 * 119.99480 * 2 1 3 5 5 C 1.46904 * 110.99603 * 92.16805 * 4 2 1 6 6 C 1.50707 * 109.46752 * 72.45270 * 5 4 2 7 7 H 1.07990 * 120.00108 * 5.03004 * 6 5 4 8 8 C 1.37880 * 119.99302 * 185.02793 * 6 5 4 9 9 N 1.31510 * 120.00485 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99534 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47433 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47237 * 120.00164 * 10 8 6 13 13 H 1.48503 * 109.47215 * 240.00097 * 10 8 6 14 14 C 1.46897 * 110.99895 * 328.21676 * 4 2 1 15 15 C 1.52996 * 109.47217 * 292.90836 * 14 4 2 16 16 C 1.50702 * 109.47116 * 185.62867 * 15 14 4 17 17 C 1.39873 * 126.03611 * 90.03027 * 16 15 14 18 18 N 1.30838 * 108.20071 * 179.97438 * 17 16 15 19 19 N 1.40081 * 108.20748 * 359.97438 * 18 17 16 20 20 C 1.46501 * 126.04108 * 180.02562 * 19 18 17 21 21 C 1.34953 * 107.92624 * 359.75957 * 19 18 17 22 22 H 1.08992 * 109.47204 * 298.63254 * 1 2 3 23 23 H 1.08994 * 109.46848 * 58.63858 * 1 2 3 24 24 H 1.09004 * 109.46369 * 178.63458 * 1 2 3 25 25 H 1.08998 * 109.47200 * 240.00158 * 2 1 3 26 26 H 1.08997 * 109.46977 * 187.22636 * 3 2 1 27 27 H 1.08998 * 109.46775 * 307.22747 * 3 2 1 28 28 H 1.08993 * 109.46972 * 67.22188 * 3 2 1 29 29 H 1.08996 * 109.46930 * 192.45428 * 5 4 2 30 30 H 1.09001 * 109.47154 * 312.45529 * 5 4 2 31 31 H 0.97000 * 119.99880 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.47171 * 52.91842 * 14 4 2 33 33 H 1.09005 * 109.46520 * 172.91113 * 14 4 2 34 34 H 1.08997 * 109.47479 * 305.63632 * 15 14 4 35 35 H 1.09001 * 109.46852 * 65.63070 * 15 14 4 36 36 H 1.08001 * 125.89624 * 359.97438 * 17 16 15 37 37 H 1.08995 * 109.47205 * 89.97418 * 20 19 18 38 38 H 1.08999 * 109.47065 * 209.97665 * 20 19 18 39 39 H 1.09000 * 109.46310 * 329.97633 * 20 19 18 40 40 H 1.07999 * 126.13532 * 180.24175 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.2441 -2.1188 0.9292 6 6 3.4694 -2.2799 0.0666 7 1 4.0718 -1.4187 -0.1819 8 6 3.8211 -3.5268 -0.4053 9 7 3.0872 -4.5753 -0.1030 10 14 5.3402 -3.7266 -1.4739 11 1 5.9873 -2.4039 -1.6667 12 1 6.2933 -4.6526 -0.8111 13 1 4.9473 -4.2819 -2.7939 14 6 1.0961 -0.5092 2.3270 15 6 1.0993 0.9596 2.7554 16 6 0.2601 1.1227 3.9965 17 6 0.7141 1.0232 5.3157 18 7 -0.3026 1.2253 6.1141 19 7 -1.4372 1.4607 5.3270 20 6 -2.7887 1.7332 5.8226 21 6 -1.0644 1.3979 4.0315 22 1 -0.3633 0.4924 0.9019 23 1 -0.3633 0.5348 -0.8775 24 1 -0.3632 -1.0275 -0.0245 25 1 1.8934 -0.5138 -0.8900 26 1 3.1223 1.4453 -0.1293 27 1 1.5749 1.9923 -0.8183 28 1 1.7860 1.9177 0.9475 29 1 2.3903 -2.6484 1.8706 30 1 1.3783 -2.5310 0.4110 31 1 3.3349 -5.4526 -0.4347 32 1 0.0898 -0.7969 2.0228 33 1 1.4151 -1.1321 3.1628 34 1 2.1215 1.2751 2.9639 35 1 0.6862 1.5725 1.9543 36 1 1.7286 0.8155 5.6223 37 1 -2.9186 2.8077 5.9514 38 1 -3.5205 1.3622 5.1050 39 1 -2.9323 1.2324 6.7800 40 1 -1.7081 1.5391 3.1760 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226227762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:14 Heat of formation + Delta-G solvation = 65.157065 kcal Electronic energy + Delta-G solvation = -18676.795722 eV Core-core repulsion = 15913.892408 eV Total energy + Delta-G solvation = -2762.903314 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.08336 -39.60929 -35.15513 -34.49756 -32.96236 -32.40157 -29.96715 -28.36492 -27.87275 -26.76480 -23.99934 -23.49258 -21.95532 -20.95424 -20.32596 -18.35776 -17.67372 -17.09343 -16.47899 -16.28059 -15.94584 -15.29327 -14.93838 -14.67420 -14.19411 -14.00593 -13.84398 -13.73817 -13.45083 -13.38734 -13.20097 -13.01675 -12.77876 -12.56962 -12.40251 -12.20484 -11.98791 -11.88064 -11.64017 -11.41246 -11.27654 -10.85476 -10.58671 -10.30662 -9.22586 -8.81561 -8.16141 -6.26515 0.99522 1.41410 1.42217 1.56132 1.76012 1.87416 2.42699 3.15075 3.40454 3.73948 4.03490 4.20910 4.27491 4.38576 4.43659 4.46508 4.48602 4.63017 4.67856 4.71021 4.78689 4.90965 4.92804 4.95393 5.02464 5.07732 5.15586 5.24421 5.28149 5.32832 5.47334 5.57989 5.68512 5.73913 5.78564 6.15615 6.21807 6.51630 6.77651 6.79688 6.92888 7.43571 8.93958 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.033085 B = 0.004551 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.096789 B = 6151.272943 C = 6440.832364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.073 3.927 3 C -0.139 4.139 4 N -0.537 5.537 5 C 0.209 3.791 6 C -0.515 4.515 7 H 0.061 0.939 8 C -0.001 4.001 9 N -0.938 5.938 10 Si 0.967 3.033 11 H -0.263 1.263 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.061 3.939 15 C -0.025 4.025 16 C -0.246 4.246 17 C 0.040 3.960 18 N -0.336 5.336 19 N -0.383 5.383 20 C 0.094 3.906 21 C 0.060 3.940 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.024 0.976 25 H 0.047 0.953 26 H 0.040 0.960 27 H 0.069 0.931 28 H 0.081 0.919 29 H -0.008 1.008 30 H -0.036 1.036 31 H 0.263 0.737 32 H 0.031 0.969 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.188 0.812 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.452 15.242 6.086 20.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.035 4.035 3 C -0.197 4.197 4 N -0.261 5.261 5 C 0.082 3.918 6 C -0.554 4.554 7 H 0.079 0.921 8 C -0.198 4.198 9 N -0.579 5.579 10 Si 0.792 3.208 11 H -0.187 1.187 12 H -0.205 1.205 13 H -0.204 1.204 14 C -0.068 4.068 15 C -0.064 4.064 16 C -0.257 4.257 17 C -0.145 4.145 18 N -0.159 5.159 19 N -0.166 5.166 20 C -0.046 4.046 21 C -0.087 4.087 22 H 0.101 0.899 23 H 0.092 0.908 24 H 0.044 0.956 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.011 0.989 30 H -0.018 1.018 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.205 0.795 37 H 0.106 0.894 38 H 0.131 0.869 39 H 0.105 0.895 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -11.573 15.375 7.480 20.646 hybrid contribution 0.331 -1.437 -1.405 2.036 sum -11.242 13.938 6.075 18.909 Atomic orbital electron populations 1.22420 0.96610 1.00490 1.03420 1.21640 0.93291 0.95979 0.92619 1.22053 1.00583 0.93998 1.03039 1.62236 1.45488 1.12636 1.05696 1.19358 0.94291 0.84255 0.93897 1.21516 1.10141 0.93580 1.30126 0.92053 1.25914 1.00321 0.95530 0.98037 1.70102 1.40781 0.99687 1.47294 0.85361 0.78905 0.78409 0.78117 1.18654 1.20517 1.20447 1.22161 0.94215 0.97564 0.92811 1.20067 0.98776 0.94490 0.93041 1.20267 0.94787 1.15314 0.95372 1.24089 0.99078 0.99457 0.91890 1.77244 0.93218 1.24982 1.20413 1.48803 1.08988 1.54519 1.04248 1.22169 0.76563 1.03399 1.02485 1.22804 0.96349 1.00922 0.88639 0.89942 0.90794 0.95636 0.93499 0.94053 0.91244 0.90089 0.98946 1.01827 0.92848 0.95054 0.94133 0.91121 0.88964 0.79516 0.89356 0.86947 0.89456 0.77961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.23 7.86 71.98 0.57 -4.67 16 2 C 0.07 2.73 2.64 44.92 0.12 2.85 16 3 C -0.14 -4.09 9.17 71.98 0.66 -3.43 16 4 N -0.54 -23.14 4.34 -875.49 -3.80 -26.94 16 5 C 0.21 11.43 4.66 85.56 0.40 11.83 16 6 C -0.52 -29.93 8.36 25.60 0.21 -29.72 16 7 H 0.06 3.52 7.81 -2.92 -0.02 3.50 16 8 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 9 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 10 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 11 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 C 0.06 2.19 4.42 86.30 0.38 2.57 16 15 C -0.03 -0.70 4.01 29.85 0.12 -0.58 16 16 C -0.25 -6.36 5.35 -20.14 -0.11 -6.47 16 17 C 0.04 1.10 11.96 85.24 1.02 2.12 16 18 N -0.34 -9.51 12.58 -57.02 -0.72 -10.23 16 19 N -0.38 -8.42 4.01 -369.56 -1.48 -9.91 16 20 C 0.09 1.10 11.47 127.77 1.47 2.57 16 21 C 0.06 1.26 11.40 83.54 0.95 2.21 16 22 H 0.08 2.12 4.78 -2.39 -0.01 2.10 16 23 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.02 0.89 7.76 -2.38 -0.02 0.87 16 25 H 0.05 2.09 7.07 -2.39 -0.02 2.07 16 26 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.08 2.09 4.38 -2.39 -0.01 2.08 16 29 H -0.01 -0.45 7.78 -2.39 -0.02 -0.47 16 30 H -0.04 -2.15 7.83 -2.39 -0.02 -2.17 16 31 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.03 1.11 5.81 -2.39 -0.01 1.10 16 33 H 0.04 1.62 7.83 -2.38 -0.02 1.60 16 34 H 0.07 2.05 8.06 -2.39 -0.02 2.03 16 35 H 0.09 2.20 4.32 -2.39 -0.01 2.19 16 36 H 0.19 4.62 8.06 -2.91 -0.02 4.60 16 37 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.20 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -72.34 318.53 3.56 -68.77 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 1.01 Total: 8.83 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 6.25 Total: -20.28 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -5.72 Total: -104.56 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -72.34 3.56 -68.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226227762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.929 kcal (2) G-P(sol) polarization free energy of solvation -72.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds