Wall clock time and date at job start Mon Mar 30 2020 04:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47392 * 2 1 4 4 N 1.46898 * 109.47402 * 120.00468 * 2 1 3 5 5 C 1.46907 * 110.99902 * 294.97140 * 4 2 1 6 6 C 1.50697 * 109.47460 * 160.32329 * 5 4 2 7 7 H 1.08007 * 119.99739 * 4.02683 * 6 5 4 8 8 C 1.37875 * 120.00089 * 184.02848 * 6 5 4 9 9 N 1.31507 * 120.00027 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99984 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47464 * 89.99651 * 10 8 6 12 12 H 1.48501 * 109.47294 * 209.99955 * 10 8 6 13 13 H 1.48502 * 109.47090 * 329.99850 * 10 8 6 14 14 C 1.46897 * 111.00158 * 171.01838 * 4 2 1 15 15 C 1.52998 * 109.47167 * 293.94811 * 14 4 2 16 16 C 1.50705 * 109.47092 * 179.97438 * 15 14 4 17 17 C 1.35311 * 126.12363 * 85.02923 * 16 15 14 18 18 C 1.39874 * 107.92097 * 180.24103 * 17 16 15 19 19 N 1.30840 * 108.19658 * 359.55649 * 18 17 16 20 20 N 1.34940 * 126.12767 * 265.00288 * 16 15 14 21 21 C 1.46499 * 126.03918 * 0.02562 * 20 16 15 22 22 H 1.09009 * 109.47225 * 306.05898 * 1 2 3 23 23 H 1.09000 * 109.47533 * 66.05358 * 1 2 3 24 24 H 1.09001 * 109.47554 * 186.06590 * 1 2 3 25 25 H 1.09002 * 109.46701 * 239.99831 * 2 1 3 26 26 H 1.09000 * 109.46903 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47347 * 299.99921 * 3 2 1 28 28 H 1.08993 * 109.47107 * 60.00268 * 3 2 1 29 29 H 1.08996 * 109.47073 * 280.32578 * 5 4 2 30 30 H 1.09006 * 109.46768 * 40.31989 * 5 4 2 31 31 H 0.97000 * 120.00341 * 180.02562 * 9 8 6 32 32 H 1.09006 * 109.46973 * 173.95293 * 14 4 2 33 33 H 1.08994 * 109.47427 * 53.95465 * 14 4 2 34 34 H 1.09006 * 109.46781 * 60.00364 * 15 14 4 35 35 H 1.08991 * 109.47495 * 300.00080 * 15 14 4 36 36 H 1.08000 * 126.04230 * 359.97438 * 17 16 15 37 37 H 1.08001 * 125.90080 * 179.73576 * 18 17 16 38 38 H 1.08996 * 109.47343 * 90.00150 * 21 20 16 39 39 H 1.09000 * 109.47243 * 210.00308 * 21 20 16 40 40 H 1.08997 * 109.47122 * 329.99596 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 1.1993 5 6 1.6493 0.0394 2.4180 6 6 1.7209 -0.8889 3.6030 7 1 2.0747 -1.9014 3.4752 8 6 1.3348 -0.4459 4.8502 9 7 0.9036 0.7867 5.0057 10 14 1.4244 -1.5963 6.3191 11 1 2.7573 -1.4753 6.9623 12 1 0.3679 -1.2332 7.2975 13 1 1.2190 -2.9954 5.8654 14 6 3.4722 -0.9004 1.1310 15 6 3.7957 -1.8705 -0.0069 16 6 5.2860 -2.0832 -0.0774 17 6 5.9997 -2.9749 0.6482 18 6 7.3444 -2.8471 0.2851 19 7 7.4334 -1.9188 -0.6327 20 7 6.1476 -1.4190 -0.8757 21 6 5.7997 -0.3617 -1.8282 22 1 -0.3634 0.6049 0.8308 23 1 -0.3634 0.4171 -0.9392 24 1 -0.3634 -1.0219 0.1086 25 1 1.8932 -0.5139 -0.8900 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9562 0.8900 29 1 2.3381 0.8710 2.5659 30 1 0.6337 0.4223 2.3173 31 1 0.6323 1.0986 5.8832 32 1 3.8244 -1.3170 2.0748 33 1 3.9674 0.0531 0.9475 34 1 3.4435 -1.4540 -0.9506 35 1 3.3006 -2.8240 0.1767 36 1 5.6020 -3.6607 1.3816 37 1 8.1668 -3.4182 0.6901 38 1 5.8493 0.6067 -1.3304 39 1 6.5020 -0.3781 -2.6617 40 1 4.7891 -0.5270 -2.2015 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230760905.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:08 Heat of formation + Delta-G solvation = 74.203465 kcal Electronic energy + Delta-G solvation = -18955.026758 eV Core-core repulsion = 16192.515725 eV Total energy + Delta-G solvation = -2762.511033 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.06514 -37.96661 -33.55212 -32.77966 -32.67479 -30.49126 -28.24275 -26.72772 -26.60582 -25.91180 -22.75810 -22.33030 -20.96921 -19.52683 -18.47310 -16.70790 -16.45673 -15.40993 -14.91128 -14.78056 -14.48133 -14.11533 -13.76153 -13.51902 -13.27033 -12.84473 -12.56047 -12.34160 -12.26947 -12.08733 -11.86373 -11.55413 -11.28138 -11.07101 -10.87845 -10.70069 -10.56299 -10.48431 -10.33649 -10.12843 -9.59812 -9.20143 -9.07533 -8.41007 -8.30470 -7.25161 -6.00748 -4.01316 2.02371 2.64373 3.01432 3.33401 3.39699 3.43963 4.42944 4.62635 4.64879 5.07979 5.14934 5.17806 5.25389 5.35243 5.39225 5.45357 5.61420 5.62861 5.79668 5.85425 5.92942 5.96357 6.07381 6.18388 6.27897 6.29867 6.39894 6.50756 6.67521 6.73174 6.81634 6.81740 7.16476 7.27221 7.36429 7.83466 7.85522 8.12983 8.20221 8.56339 9.06277 9.62683 11.09822 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.018196 B = 0.006523 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.445159 B = 4291.290197 C = 5418.668542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.072 3.928 3 C -0.185 4.185 4 N -0.528 5.528 5 C 0.192 3.808 6 C -0.504 4.504 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.901 5.901 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.071 3.929 15 C -0.057 4.057 16 C 0.101 3.899 17 C -0.274 4.274 18 C 0.045 3.955 19 N -0.311 5.311 20 N -0.375 5.375 21 C 0.101 3.899 22 H 0.061 0.939 23 H 0.044 0.956 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.065 0.935 29 H -0.010 1.010 30 H 0.039 0.961 31 H 0.260 0.740 32 H 0.086 0.914 33 H 0.021 0.979 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.148 0.852 37 H 0.180 0.820 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.970 -2.849 -12.528 14.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.037 4.037 3 C -0.244 4.244 4 N -0.252 5.252 5 C 0.067 3.933 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.541 5.541 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.197 1.197 14 C -0.058 4.058 15 C -0.097 4.097 16 C -0.027 4.027 17 C -0.303 4.303 18 C -0.140 4.140 19 N -0.132 5.132 20 N -0.158 5.158 21 C -0.040 4.040 22 H 0.080 0.920 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.007 0.993 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.039 0.961 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.166 0.834 37 H 0.197 0.803 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.416 -2.426 -13.244 14.915 hybrid contribution -0.056 -0.054 1.433 1.435 sum 6.360 -2.480 -11.811 13.642 Atomic orbital electron populations 1.21810 0.94846 1.02464 1.00631 1.21678 0.95767 0.91827 0.94395 1.22478 1.00680 0.99159 1.02033 1.62370 1.10543 1.49414 1.02855 1.19772 0.96163 0.92282 0.85089 1.21194 1.42576 0.98688 0.91772 0.91924 1.24968 0.95502 0.95186 0.98963 1.69946 1.44646 1.15997 1.23473 0.86539 0.77587 0.81226 0.82333 1.20802 1.21349 1.19740 1.21897 0.89880 0.95994 0.98041 1.20420 0.86351 1.02756 1.00139 1.21233 0.94052 0.94080 0.93355 1.21289 0.93043 1.07385 1.08622 1.23780 0.97578 0.96777 0.95866 1.77279 0.99627 1.15436 1.20847 1.48439 1.04713 1.30342 1.32312 1.21792 1.01931 0.88598 0.91723 0.92000 0.93688 0.92053 0.91702 0.93436 0.93349 0.91618 0.99251 0.94310 0.93009 0.89563 0.96056 0.91367 0.88504 0.83441 0.80297 0.90893 0.89619 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.00 37.15 0.33 -1.94 16 2 C 0.07 1.20 2.80 -67.72 -0.19 1.01 16 3 C -0.18 -2.95 8.54 37.16 0.32 -2.63 16 4 N -0.53 -10.58 4.38 -228.09 -1.00 -11.58 16 5 C 0.19 4.77 3.38 -4.97 -0.02 4.75 16 6 C -0.50 -13.84 8.60 -34.44 -0.30 -14.14 16 7 H 0.06 1.71 7.68 -52.48 -0.40 1.31 16 8 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.47 13.29 55.43 0.74 -25.74 16 10 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.07 1.29 4.64 -3.83 -0.02 1.27 16 15 C -0.06 -0.84 5.44 -27.88 -0.15 -0.99 16 16 C 0.10 1.50 6.18 -82.27 -0.51 0.99 16 17 C -0.27 -4.03 10.72 -40.01 -0.43 -4.46 16 18 C 0.05 0.63 12.03 -17.36 -0.21 0.42 16 19 N -0.31 -4.82 12.58 30.63 0.39 -4.43 16 20 N -0.38 -5.42 4.01 -63.89 -0.26 -5.68 16 21 C 0.10 1.07 11.27 59.85 0.67 1.74 16 22 H 0.06 1.14 6.47 -51.92 -0.34 0.80 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.94 6.12 -51.93 -0.32 0.62 16 26 H 0.05 0.74 6.54 -51.93 -0.34 0.40 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 1.22 6.79 -51.93 -0.35 0.87 16 29 H -0.01 -0.28 7.31 -51.93 -0.38 -0.66 16 30 H 0.04 1.03 5.92 -51.93 -0.31 0.72 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.09 1.78 7.34 -51.93 -0.38 1.40 16 33 H 0.02 0.40 6.35 -51.93 -0.33 0.07 16 34 H 0.07 0.88 5.19 -51.93 -0.27 0.61 16 35 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.15 1.99 8.06 -52.49 -0.42 1.56 16 37 H 0.18 1.86 8.06 -52.49 -0.42 1.43 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.76 6.97 -51.93 -0.36 0.39 16 LS Contribution 319.11 15.07 4.81 4.81 Total: -1.00 -31.12 319.11 -7.23 -38.35 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.29 Total: 0.26 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -0.59 Total: -12.52 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.13 Total: -47.43 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.12 -7.23 -38.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230760905.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.555 kcal (2) G-P(sol) polarization free energy of solvation -31.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds