Wall clock time and date at job start Mon Mar 30 2020 03:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48502 * 109.46717 * 269.72417 * 3 2 1 5 5 H 1.48491 * 109.46906 * 29.72083 * 3 2 1 6 6 H 1.48496 * 109.47101 * 149.72396 * 3 2 1 7 7 C 1.37877 * 119.99893 * 179.72243 * 2 1 3 8 8 H 1.08000 * 120.00116 * 175.74857 * 7 2 1 9 9 C 1.50703 * 120.00107 * 355.74560 * 7 2 1 10 10 C 1.52991 * 115.55253 * 279.67032 * 9 7 2 11 11 N 1.46897 * 109.47363 * 296.09373 * 10 9 7 12 12 C 1.46901 * 111.00406 * 185.37856 * 11 10 9 13 13 H 1.09002 * 110.43399 * 39.88015 * 12 11 10 14 14 C 1.54803 * 110.48826 * 277.33395 * 12 11 10 15 15 C 1.54999 * 102.09194 * 220.44158 * 14 12 11 16 16 O 1.44381 * 103.49002 * 37.02096 * 15 14 12 17 17 C 1.43738 * 106.97513 * 319.94125 * 16 15 14 18 18 H 1.08995 * 109.87763 * 267.08834 * 17 16 15 19 19 C 1.53004 * 109.88077 * 145.93718 * 17 16 15 20 20 C 1.53001 * 117.50012 * 136.10406 * 19 17 16 21 21 C 1.52997 * 117.49611 * 67.48268 * 19 17 16 22 22 C 1.53002 * 117.49806 * 133.95737 * 9 7 2 23 23 C 1.52998 * 60.00473 * 252.51483 * 22 9 7 24 24 H 0.97003 * 119.99951 * 185.28306 * 1 2 3 25 25 H 1.08998 * 109.47500 * 56.09397 * 10 9 7 26 26 H 1.09007 * 109.47507 * 176.09193 * 10 9 7 27 27 H 1.00902 * 111.00190 * 61.42025 * 11 10 9 28 28 H 1.09006 * 110.90842 * 338.63618 * 14 12 11 29 29 H 1.08996 * 110.91066 * 102.24460 * 14 12 11 30 30 H 1.09008 * 110.61718 * 155.52197 * 15 14 12 31 31 H 1.08999 * 110.61999 * 278.51855 * 15 14 12 32 32 H 1.08995 * 115.54892 * 281.81926 * 19 17 16 33 33 H 1.09002 * 117.49798 * 0.02562 * 20 19 17 34 34 H 1.09001 * 117.49471 * 145.02219 * 20 19 17 35 35 H 1.09009 * 117.50009 * 214.97861 * 21 19 17 36 36 H 1.09002 * 117.50144 * 0.02562 * 21 19 17 37 37 H 1.09005 * 117.49814 * 0.02562 * 22 9 7 38 38 H 1.09000 * 117.49717 * 145.02153 * 22 9 7 39 39 H 1.09001 * 117.50060 * 252.51457 * 23 22 9 40 40 H 1.08993 * 117.49902 * 107.48730 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5025 2.0430 -1.4001 5 1 1.4438 2.6543 0.6941 6 1 3.5438 1.4418 0.7058 7 6 2.0046 -1.1941 0.0058 8 1 3.0823 -1.1957 -0.0635 9 6 1.2542 -2.4969 0.1089 10 6 0.8125 -2.8942 1.5188 11 7 1.9970 -3.1187 2.3580 12 6 1.6152 -3.6253 3.6830 13 1 0.8026 -4.3464 3.5950 14 6 1.2048 -2.4571 4.6121 15 6 1.8446 -2.8747 5.9608 16 8 3.0941 -3.4817 5.5672 17 6 2.8294 -4.2602 4.3882 18 1 2.6002 -5.2886 4.6669 19 6 4.0453 -4.2284 3.4600 20 6 4.4801 -5.5483 2.8198 21 6 5.3185 -4.9284 3.9394 22 6 1.6543 -3.6204 -0.8495 23 6 0.3334 -2.8757 -1.0530 24 1 -0.4850 -0.8365 0.0774 25 1 0.2085 -2.0954 1.9490 26 1 0.2227 -3.8097 1.4704 27 1 2.5485 -2.2774 2.4377 28 1 1.6224 -1.5141 4.2591 29 1 0.1203 -2.3922 4.6997 30 1 2.0229 -2.0011 6.5879 31 1 1.2130 -3.5971 6.4778 32 1 4.1625 -3.3197 2.8697 33 1 3.8996 -6.4392 3.0595 34 1 4.8832 -5.5080 1.8078 35 1 6.2734 -4.4804 3.6641 36 1 5.2898 -5.4119 4.9159 37 1 2.4607 -3.4173 -1.5543 38 1 1.6032 -4.6430 -0.4755 39 1 -0.5868 -3.4083 -0.8128 40 1 0.2705 -2.1826 -1.8918 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236164957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:39 Heat of formation + Delta-G solvation = 2.187615 kcal Electronic energy + Delta-G solvation = -19366.003146 eV Core-core repulsion = 16568.076521 eV Total energy + Delta-G solvation = -2797.926626 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.73538 -37.09064 -36.30759 -34.30096 -31.85782 -30.18540 -28.50359 -25.11118 -24.10699 -22.92220 -22.12893 -21.38136 -21.14877 -19.40448 -19.37513 -16.85616 -16.22951 -15.93583 -15.24351 -14.52137 -14.28378 -14.04196 -13.77494 -13.74229 -13.44054 -12.48156 -12.37089 -12.13732 -11.83971 -11.60934 -11.33858 -11.27820 -11.02278 -10.85616 -10.67156 -10.53791 -10.33632 -10.14796 -9.95480 -9.72380 -9.57764 -9.34861 -8.61180 -8.43890 -8.17202 -7.62784 -6.33695 -4.08380 3.41244 3.43700 3.59368 3.78981 4.41241 4.48501 4.54432 4.84090 4.88913 5.09832 5.19115 5.27491 5.31248 5.35800 5.39579 5.50328 5.69180 5.73240 5.84423 5.88719 5.95120 5.97042 6.04049 6.17311 6.20866 6.29111 6.35649 6.38044 6.58171 6.65459 6.71473 6.72102 6.95240 7.07032 7.29008 7.34509 7.83481 8.10878 8.31927 8.44621 8.89602 9.66530 11.04557 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.007152 C = 0.006553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.879730 B = 3914.062185 C = 4271.551828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.025 3.975 3 Si 1.065 2.935 4 H -0.289 1.289 5 H -0.286 1.286 6 H -0.288 1.288 7 C -0.567 4.567 8 H 0.052 0.948 9 C 0.030 3.970 10 C 0.101 3.899 11 N -0.657 5.657 12 C 0.062 3.938 13 H 0.083 0.917 14 C -0.188 4.188 15 C 0.049 3.951 16 O -0.373 6.373 17 C 0.113 3.887 18 H 0.062 0.938 19 C -0.118 4.118 20 C -0.164 4.164 21 C -0.187 4.187 22 C -0.182 4.182 23 C -0.188 4.188 24 H 0.275 0.725 25 H 0.027 0.973 26 H 0.039 0.961 27 H 0.352 0.648 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 -7.785 8.978 12.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.893 3.107 4 H -0.216 1.216 5 H -0.212 1.212 6 H -0.214 1.214 7 C -0.605 4.605 8 H 0.071 0.929 9 C 0.029 3.971 10 C -0.028 4.028 11 N -0.289 5.289 12 C -0.049 4.049 13 H 0.101 0.899 14 C -0.228 4.228 15 C -0.028 4.028 16 O -0.292 6.292 17 C 0.055 3.945 18 H 0.080 0.920 19 C -0.137 4.137 20 C -0.201 4.201 21 C -0.224 4.224 22 C -0.220 4.220 23 C -0.226 4.226 24 H 0.086 0.914 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.173 0.827 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.138 0.862 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.856 -6.731 8.738 11.684 hybrid contribution -0.584 -0.903 0.287 1.113 sum 3.272 -7.634 9.025 12.265 Atomic orbital electron populations 1.70696 1.06796 1.31574 1.45291 1.25732 0.96576 1.02152 0.93580 0.83605 0.74815 0.75398 0.76841 1.21550 1.21192 1.21356 1.21312 0.93856 0.89747 1.55614 0.92941 1.19010 0.97859 0.94076 0.86158 1.21517 0.90256 0.96710 0.94295 1.60546 1.21141 1.37840 1.09328 1.22900 0.95897 0.95895 0.90255 0.89891 1.23930 1.01622 1.00630 0.96585 1.23425 0.85856 0.97175 0.96369 1.88894 1.30368 1.66305 1.43636 1.22298 0.93900 0.93895 0.84374 0.91989 1.22003 0.93223 0.98062 1.00388 1.22778 1.03367 0.96262 0.97709 1.22899 0.95716 1.05199 0.98608 1.22691 0.97955 0.95913 1.05414 1.22806 0.92293 1.03631 1.03902 0.91357 0.95522 0.94253 0.82670 0.89958 0.90567 0.89338 0.92648 0.86241 0.89583 0.88710 0.89249 0.89422 0.90710 0.91472 0.91974 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.16 13.55 55.43 0.75 -25.41 16 2 C 0.03 0.68 5.44 -17.82 -0.10 0.58 16 3 Si 1.06 24.52 29.91 -169.99 -5.08 19.44 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.57 -15.05 8.26 -34.44 -0.28 -15.33 16 8 H 0.05 1.43 7.82 -52.49 -0.41 1.02 16 9 C 0.03 0.71 1.15 -155.66 -0.18 0.53 16 10 C 0.10 2.14 5.34 -3.83 -0.02 2.12 16 11 N -0.66 -12.20 4.59 -105.12 -0.48 -12.68 16 12 C 0.06 0.97 3.30 -66.19 -0.22 0.76 16 13 H 0.08 1.25 7.85 -51.93 -0.41 0.85 16 14 C -0.19 -2.75 6.65 -24.73 -0.16 -2.92 16 15 C 0.05 0.63 7.72 38.21 0.29 0.93 16 16 O -0.37 -5.73 11.18 -35.23 -0.39 -6.13 16 17 C 0.11 1.68 3.58 -26.15 -0.09 1.59 16 18 H 0.06 0.86 7.99 -51.93 -0.41 0.45 16 19 C -0.12 -1.79 4.63 -90.62 -0.42 -2.21 16 20 C -0.16 -2.23 10.18 -26.73 -0.27 -2.50 16 21 C -0.19 -2.49 10.25 -26.73 -0.27 -2.76 16 22 C -0.18 -4.00 9.95 -26.73 -0.27 -4.27 16 23 C -0.19 -4.34 8.62 -26.73 -0.23 -4.57 16 24 H 0.28 7.87 6.27 -40.82 -0.26 7.61 16 25 H 0.03 0.62 7.93 -51.93 -0.41 0.20 16 26 H 0.04 0.79 7.93 -51.93 -0.41 0.38 16 27 H 0.35 7.12 6.91 -39.29 -0.27 6.85 16 28 H 0.08 1.35 7.70 -51.93 -0.40 0.95 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.12 2.05 6.51 -51.93 -0.34 1.71 16 33 H 0.09 1.09 8.10 -51.93 -0.42 0.66 16 34 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 LS Contribution 322.08 15.07 4.85 4.85 Total: -1.00 -27.86 322.08 -9.35 -37.21 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -6.77 Total: 10.78 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: -2.22 Total: -28.07 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.27 Total: -38.09 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.39 Total: -6.13 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.08 Total: 19.44 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.86 -9.35 -37.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236164957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.394 kcal (2) G-P(sol) polarization free energy of solvation -27.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds