Wall clock time and date at job start Mon Mar 30 2020 03:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48502 * 109.46717 * 269.72417 * 3 2 1 5 5 H 1.48491 * 109.46906 * 29.72083 * 3 2 1 6 6 H 1.48496 * 109.47101 * 149.72396 * 3 2 1 7 7 C 1.37877 * 119.99893 * 179.72243 * 2 1 3 8 8 H 1.08000 * 120.00116 * 175.74857 * 7 2 1 9 9 C 1.50703 * 120.00107 * 355.74560 * 7 2 1 10 10 C 1.52991 * 115.55253 * 279.67032 * 9 7 2 11 11 N 1.46897 * 109.47363 * 296.09373 * 10 9 7 12 12 C 1.46901 * 111.00406 * 185.37856 * 11 10 9 13 13 H 1.09002 * 110.43399 * 39.88015 * 12 11 10 14 14 C 1.54803 * 110.48826 * 277.33395 * 12 11 10 15 15 C 1.54999 * 102.09194 * 220.44158 * 14 12 11 16 16 O 1.44381 * 103.49002 * 37.02096 * 15 14 12 17 17 C 1.43738 * 106.97513 * 319.94125 * 16 15 14 18 18 H 1.08995 * 109.87763 * 267.08834 * 17 16 15 19 19 C 1.53004 * 109.88077 * 145.93718 * 17 16 15 20 20 C 1.53001 * 117.50012 * 136.10406 * 19 17 16 21 21 C 1.52997 * 117.49611 * 67.48268 * 19 17 16 22 22 C 1.53002 * 117.49806 * 133.95737 * 9 7 2 23 23 C 1.52998 * 60.00473 * 252.51483 * 22 9 7 24 24 H 0.97003 * 119.99951 * 185.28306 * 1 2 3 25 25 H 1.08998 * 109.47500 * 56.09397 * 10 9 7 26 26 H 1.09007 * 109.47507 * 176.09193 * 10 9 7 27 27 H 1.00902 * 111.00190 * 61.42025 * 11 10 9 28 28 H 1.09006 * 110.90842 * 338.63618 * 14 12 11 29 29 H 1.08996 * 110.91066 * 102.24460 * 14 12 11 30 30 H 1.09008 * 110.61718 * 155.52197 * 15 14 12 31 31 H 1.08999 * 110.61999 * 278.51855 * 15 14 12 32 32 H 1.08995 * 115.54892 * 281.81926 * 19 17 16 33 33 H 1.09002 * 117.49798 * 0.02562 * 20 19 17 34 34 H 1.09001 * 117.49471 * 145.02219 * 20 19 17 35 35 H 1.09009 * 117.50009 * 214.97861 * 21 19 17 36 36 H 1.09002 * 117.50144 * 0.02562 * 21 19 17 37 37 H 1.09005 * 117.49814 * 0.02562 * 22 9 7 38 38 H 1.09000 * 117.49717 * 145.02153 * 22 9 7 39 39 H 1.09001 * 117.50060 * 252.51457 * 23 22 9 40 40 H 1.08993 * 117.49902 * 107.48730 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5025 2.0430 -1.4001 5 1 1.4438 2.6543 0.6941 6 1 3.5438 1.4418 0.7058 7 6 2.0046 -1.1941 0.0058 8 1 3.0823 -1.1957 -0.0635 9 6 1.2542 -2.4969 0.1089 10 6 0.8125 -2.8942 1.5188 11 7 1.9970 -3.1187 2.3580 12 6 1.6152 -3.6253 3.6830 13 1 0.8026 -4.3464 3.5950 14 6 1.2048 -2.4571 4.6121 15 6 1.8446 -2.8747 5.9608 16 8 3.0941 -3.4817 5.5672 17 6 2.8294 -4.2602 4.3882 18 1 2.6002 -5.2886 4.6669 19 6 4.0453 -4.2284 3.4600 20 6 4.4801 -5.5483 2.8198 21 6 5.3185 -4.9284 3.9394 22 6 1.6543 -3.6204 -0.8495 23 6 0.3334 -2.8757 -1.0530 24 1 -0.4850 -0.8365 0.0774 25 1 0.2085 -2.0954 1.9490 26 1 0.2227 -3.8097 1.4704 27 1 2.5485 -2.2774 2.4377 28 1 1.6224 -1.5141 4.2591 29 1 0.1203 -2.3922 4.6997 30 1 2.0229 -2.0011 6.5879 31 1 1.2130 -3.5971 6.4778 32 1 4.1625 -3.3197 2.8697 33 1 3.8996 -6.4392 3.0595 34 1 4.8832 -5.5080 1.8078 35 1 6.2734 -4.4804 3.6641 36 1 5.2898 -5.4119 4.9159 37 1 2.4607 -3.4173 -1.5543 38 1 1.6032 -4.6430 -0.4755 39 1 -0.5868 -3.4083 -0.8128 40 1 0.2705 -2.1826 -1.8918 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236164957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:38 Heat of formation + Delta-G solvation = -13.027717 kcal Electronic energy + Delta-G solvation = -19366.662932 eV Core-core repulsion = 16568.076521 eV Total energy + Delta-G solvation = -2798.586412 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.92532 -38.87236 -37.40394 -35.75107 -33.91856 -31.45537 -29.74485 -27.10748 -25.76585 -24.04709 -23.21622 -22.97607 -22.53581 -21.28756 -20.60735 -18.56615 -17.69250 -17.11052 -16.44094 -15.98201 -15.73653 -15.60229 -15.54694 -15.16394 -14.61054 -14.27368 -14.09333 -13.68241 -13.24316 -12.96971 -12.75829 -12.56165 -12.38188 -12.32153 -12.28067 -12.15620 -11.96699 -11.72946 -11.26676 -11.05290 -10.82340 -10.65909 -10.58103 -10.33360 -10.12979 -9.15315 -8.48956 -6.23366 1.52997 1.59459 1.76918 2.57265 2.69549 3.05608 3.26502 3.33239 3.51304 3.70727 3.73513 3.98492 4.07691 4.16834 4.20579 4.26630 4.37391 4.47214 4.49414 4.55217 4.61547 4.75592 4.79379 4.82604 4.85715 4.89442 4.90105 4.97628 5.03094 5.11185 5.12425 5.34405 5.47637 5.50420 5.52143 5.96137 6.21641 6.29940 6.31675 6.52866 6.78313 7.56889 8.89917 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.007152 C = 0.006553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.879730 B = 3914.062185 C = 4271.551828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.019 4.019 3 Si 1.105 2.895 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.570 4.570 8 H 0.039 0.961 9 C 0.006 3.994 10 C 0.117 3.883 11 N -0.652 5.652 12 C 0.059 3.941 13 H 0.093 0.907 14 C -0.187 4.187 15 C 0.052 3.948 16 O -0.389 6.389 17 C 0.120 3.880 18 H 0.079 0.921 19 C -0.140 4.140 20 C -0.158 4.158 21 C -0.175 4.175 22 C -0.163 4.163 23 C -0.190 4.190 24 H 0.266 0.734 25 H -0.001 1.001 26 H 0.053 0.947 27 H 0.340 0.660 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.244 -9.068 10.159 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.219 4.219 3 Si 0.929 3.071 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.608 4.608 8 H 0.057 0.943 9 C 0.006 3.994 10 C -0.012 4.012 11 N -0.282 5.282 12 C -0.052 4.052 13 H 0.111 0.889 14 C -0.226 4.226 15 C -0.024 4.024 16 O -0.309 6.309 17 C 0.062 3.938 18 H 0.097 0.903 19 C -0.159 4.159 20 C -0.195 4.195 21 C -0.212 4.212 22 C -0.200 4.200 23 C -0.229 4.229 24 H 0.077 0.923 25 H 0.017 0.983 26 H 0.072 0.928 27 H 0.159 0.841 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.380 -8.040 9.922 13.501 hybrid contribution -0.717 -0.540 -0.088 0.902 sum 3.663 -8.580 9.834 13.555 Atomic orbital electron populations 1.70798 1.07590 1.31110 1.47615 1.26857 0.96652 1.05248 0.93106 0.83072 0.74400 0.72350 0.77307 1.20706 1.21326 1.19800 1.21520 0.93408 0.91310 1.54559 0.94252 1.19141 0.98543 0.93926 0.87814 1.21248 0.90783 0.96184 0.93018 1.60539 1.19784 1.36847 1.11046 1.23022 0.96910 0.96364 0.88953 0.88858 1.23853 1.02080 0.99080 0.97599 1.23562 0.85186 0.98241 0.95419 1.88875 1.31671 1.66615 1.43708 1.22260 0.93035 0.94414 0.84057 0.90282 1.21930 0.94774 0.97859 1.01341 1.22827 1.03164 0.95797 0.97683 1.22940 0.95074 1.04188 0.98991 1.22675 0.96792 0.96472 1.04038 1.22720 0.93642 1.03690 1.02802 0.92322 0.98268 0.92825 0.84074 0.92438 0.89837 0.88060 0.90192 0.88911 0.88187 0.89087 0.88826 0.88412 0.91305 0.89109 0.90214 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.74 13.55 21.45 0.29 -54.45 16 2 C -0.02 -1.03 5.44 84.65 0.46 -0.57 16 3 Si 1.10 49.80 29.91 68.60 2.05 51.85 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.57 -30.63 8.26 25.60 0.21 -30.42 16 8 H 0.04 2.17 7.82 -2.91 -0.02 2.15 16 9 C 0.01 0.31 1.15 -52.93 -0.06 0.25 16 10 C 0.12 4.92 5.34 86.30 0.46 5.38 16 11 N -0.65 -23.98 4.59 -486.49 -2.23 -26.22 16 12 C 0.06 1.75 3.30 45.90 0.15 1.90 16 13 H 0.09 2.61 7.85 -2.39 -0.02 2.59 16 14 C -0.19 -5.29 6.65 31.89 0.21 -5.08 16 15 C 0.05 1.24 7.72 72.67 0.56 1.80 16 16 O -0.39 -11.18 11.18 -148.98 -1.67 -12.85 16 17 C 0.12 3.32 3.58 30.97 0.11 3.43 16 18 H 0.08 1.94 7.99 -2.39 -0.02 1.92 16 19 C -0.14 -4.08 4.63 -10.79 -0.05 -4.13 16 20 C -0.16 -3.96 10.18 30.59 0.31 -3.65 16 21 C -0.17 -4.29 10.25 30.59 0.31 -3.98 16 22 C -0.16 -6.95 9.95 30.59 0.30 -6.64 16 23 C -0.19 -8.76 8.62 30.60 0.26 -8.49 16 24 H 0.27 15.59 6.27 -92.71 -0.58 15.00 16 25 H 0.00 -0.04 7.93 -2.39 -0.02 -0.06 16 26 H 0.05 2.08 7.93 -2.38 -0.02 2.06 16 27 H 0.34 14.01 6.91 -89.69 -0.62 13.39 16 28 H 0.06 1.91 7.70 -2.38 -0.02 1.89 16 29 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.09 3.21 6.51 -2.39 -0.02 3.19 16 33 H 0.10 2.23 8.10 -2.39 -0.02 2.21 16 34 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.07 3.00 8.14 -2.38 -0.02 2.98 16 38 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 39 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 40 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -59.35 322.08 2.27 -57.08 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: 0.57 Total: 34.79 kcal Atomic # 6 Polarization: -53.46 SS G_CDS: 3.25 Total: -50.20 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -1.94 Total: -80.67 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -1.67 Total: -12.85 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.05 Total: 51.85 kcal Total: -59.35 2.27 -57.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236164957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.054 kcal (2) G-P(sol) polarization free energy of solvation -59.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds