Wall clock time and date at job start Mon Mar 30 2020 04:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46896 * 111.00125 * 2 1 4 4 C 1.46905 * 111.00063 * 123.95533 * 2 1 3 5 5 C 1.53005 * 109.46938 * 66.04240 * 4 2 1 6 6 C 1.52995 * 109.46753 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47013 * 180.02562 * 6 5 4 8 8 H 1.09006 * 109.47230 * 55.00120 * 7 6 5 9 9 C 1.50697 * 109.47299 * 295.00131 * 7 6 5 10 10 H 1.07991 * 120.00449 * 119.72229 * 9 7 6 11 11 C 1.37885 * 119.99686 * 300.00060 * 9 7 6 12 12 N 1.31516 * 119.99913 * 359.72095 * 11 9 7 13 13 Si 1.86798 * 119.99766 * 179.72528 * 11 9 7 14 14 H 1.48490 * 109.47339 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47239 * 120.00108 * 13 11 9 16 16 H 1.48504 * 109.46636 * 239.99667 * 13 11 9 17 17 C 1.50707 * 109.47397 * 174.99714 * 7 6 5 18 18 N 1.30501 * 125.64625 * 60.02243 * 17 7 6 19 19 C 1.34126 * 109.25356 * 180.02562 * 18 17 7 20 20 C 1.34669 * 108.02306 * 0.02562 * 19 18 17 21 21 N 1.35033 * 125.65162 * 239.71843 * 17 7 6 22 22 C 1.46502 * 126.39983 * 0.02562 * 21 17 7 23 23 H 1.08999 * 109.47013 * 296.04844 * 1 2 3 24 24 H 1.09000 * 109.47284 * 56.04098 * 1 2 3 25 25 H 1.09001 * 109.47349 * 176.04804 * 1 2 3 26 26 H 1.09007 * 109.47224 * 183.95686 * 3 2 1 27 27 H 1.09002 * 109.47530 * 303.95156 * 3 2 1 28 28 H 1.08993 * 109.47231 * 63.95525 * 3 2 1 29 29 H 1.08992 * 109.46986 * 306.04355 * 4 2 1 30 30 H 1.08997 * 109.46995 * 186.04524 * 4 2 1 31 31 H 1.09002 * 109.47140 * 60.00272 * 5 4 2 32 32 H 1.08997 * 109.47046 * 300.00231 * 5 4 2 33 33 H 1.08991 * 109.47648 * 60.00368 * 6 5 4 34 34 H 1.09011 * 109.47265 * 299.99658 * 6 5 4 35 35 H 0.97000 * 119.99651 * 180.02562 * 12 11 9 36 36 H 1.08009 * 125.98684 * 179.97438 * 19 18 17 37 37 H 1.07996 * 126.59005 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.47185 * 89.99796 * 22 21 17 39 39 H 1.08996 * 109.47221 * 209.99614 * 22 21 17 40 40 H 1.08998 * 109.46933 * 330.00084 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6313 -2.2427 0.9703 6 6 2.1791 -3.0403 2.1554 7 6 1.8156 -4.5170 1.9879 8 1 2.1745 -4.8723 1.0218 9 6 0.3187 -4.6770 2.0574 10 1 -0.2200 -5.0884 1.2168 11 6 -0.3636 -4.2926 3.1922 12 7 0.2925 -3.7915 4.2160 13 14 -2.2199 -4.4837 3.2755 14 1 -2.7151 -5.0671 2.0029 15 1 -2.5750 -5.3818 4.4035 16 1 -2.8455 -3.1534 3.4862 17 6 2.4584 -5.3207 3.0889 18 7 2.2523 -5.1601 4.3674 19 6 2.9909 -6.0480 5.0494 20 6 3.6813 -6.7865 4.1597 21 7 3.3385 -6.3300 2.9156 22 6 3.8380 -6.8378 1.6353 23 1 -0.3633 0.4513 0.9233 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3634 -1.0252 -0.0708 26 1 3.0828 1.3432 -0.0709 27 1 1.5898 1.9163 -0.8524 28 1 1.7044 1.8723 0.9232 29 1 1.5611 -0.3873 2.0627 30 1 3.0797 -0.6611 1.1756 31 1 2.0657 -2.6214 0.0451 32 1 0.5471 -2.3475 0.9323 33 1 1.7445 -2.6616 3.0804 34 1 3.2635 -2.9356 2.1938 35 1 -0.1876 -3.5215 5.0145 36 1 3.0263 -6.1519 6.1239 37 1 4.3685 -7.5887 4.3845 38 1 4.7390 -6.2923 1.3547 39 1 4.0703 -7.8984 1.7309 40 1 3.0762 -6.7004 0.8679 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259799142.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:35 Heat of formation + Delta-G solvation = 60.051475 kcal Electronic energy + Delta-G solvation = -19170.808786 eV Core-core repulsion = 16407.684077 eV Total energy + Delta-G solvation = -2763.124709 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.41687 -38.67443 -36.56246 -34.44700 -33.41310 -31.30473 -28.74093 -28.43029 -27.40616 -26.87104 -24.72884 -22.58464 -21.73869 -21.25599 -20.26594 -18.03507 -17.35610 -16.71500 -16.37844 -16.22543 -15.96771 -15.57815 -15.26709 -14.86792 -14.27959 -14.05407 -13.70930 -13.53344 -13.31991 -13.21061 -13.11778 -12.87613 -12.76394 -12.67756 -12.52463 -12.33065 -11.94705 -11.60762 -11.33605 -11.12132 -10.91254 -10.39652 -9.99038 -9.74625 -9.26892 -8.72709 -7.69716 -5.96293 1.40535 1.45547 1.52269 1.60629 2.40142 2.53083 2.93665 3.13060 3.43456 4.12462 4.18026 4.30283 4.32414 4.36360 4.47165 4.53183 4.55373 4.68687 4.70911 4.77546 4.79560 4.82283 4.88641 4.99899 5.01189 5.08167 5.20467 5.27677 5.39404 5.50975 5.73848 5.80989 5.92176 6.11133 6.21824 6.25137 6.41025 6.45871 6.80304 7.05251 7.66915 8.04934 9.14804 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.016922 B = 0.007844 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.230960 B = 3568.839044 C = 4616.469328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.557 5.557 3 C 0.024 3.976 4 C 0.065 3.935 5 C -0.084 4.084 6 C -0.088 4.088 7 C 0.126 3.874 8 H 0.038 0.962 9 C -0.548 4.548 10 H 0.045 0.955 11 C 0.040 3.960 12 N -0.813 5.813 13 Si 0.921 3.079 14 H -0.271 1.271 15 H -0.297 1.297 16 H -0.281 1.281 17 C 0.223 3.777 18 N -0.457 5.457 19 C -0.094 4.094 20 C -0.085 4.085 21 N -0.483 5.483 22 C 0.072 3.928 23 H 0.016 0.984 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.020 0.980 29 H 0.014 0.986 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.016 0.984 35 H 0.246 0.754 36 H 0.159 0.841 37 H 0.197 0.803 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.489 1.892 -6.791 9.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.281 5.281 3 C -0.124 4.124 4 C -0.063 4.063 5 C -0.122 4.122 6 C -0.127 4.127 7 C 0.106 3.894 8 H 0.056 0.944 9 C -0.587 4.587 10 H 0.064 0.936 11 C -0.167 4.167 12 N -0.445 5.445 13 Si 0.748 3.252 14 H -0.196 1.196 15 H -0.224 1.224 16 H -0.207 1.207 17 C -0.040 4.040 18 N -0.173 5.173 19 C -0.243 4.243 20 C -0.217 4.217 21 N -0.167 5.167 22 C -0.070 4.070 23 H 0.034 0.966 24 H 0.104 0.896 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.039 0.961 29 H 0.032 0.968 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.034 0.966 35 H 0.057 0.943 36 H 0.176 0.824 37 H 0.214 0.786 38 H 0.102 0.898 39 H 0.121 0.879 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.171 2.279 -6.794 9.456 hybrid contribution -0.953 -0.587 1.108 1.575 sum 5.218 1.692 -5.686 7.900 Atomic orbital electron populations 1.22426 0.87334 1.02372 1.00407 1.62050 1.08411 1.14529 1.43074 1.22444 1.01147 0.88060 1.00762 1.22068 0.99488 0.94344 0.90387 1.21248 1.00856 0.92659 0.97453 1.21289 0.95654 0.96251 0.99527 1.17235 0.93634 0.90723 0.87854 0.94418 1.20861 0.91478 1.45199 1.01142 0.93635 1.25448 0.99684 0.95820 0.95755 1.70310 1.33550 1.37424 1.03206 0.86106 0.84355 0.77329 0.77361 1.19559 1.22372 1.20749 1.24803 0.92277 0.91800 0.95135 1.70999 1.20194 1.23045 1.03083 1.22885 1.01550 0.99649 1.00197 1.22816 1.08367 1.06245 0.84300 1.45957 1.34772 1.28303 1.07649 1.22109 1.00623 1.01309 0.82959 0.96550 0.89647 0.92018 0.90767 0.89891 0.96139 0.96770 0.90839 0.92664 0.92933 0.91407 0.96575 0.94345 0.82392 0.78608 0.89845 0.87934 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.32 127.69 1.19 1.86 16 2 N -0.56 -17.02 5.02 -948.86 -4.76 -21.78 16 3 C 0.02 0.57 9.57 127.69 1.22 1.79 16 4 C 0.06 2.29 4.96 86.30 0.43 2.71 16 5 C -0.08 -3.40 4.95 30.59 0.15 -3.25 16 6 C -0.09 -4.09 4.51 30.59 0.14 -3.95 16 7 C 0.13 6.16 2.42 -12.29 -0.03 6.13 16 8 H 0.04 1.68 6.73 -2.38 -0.02 1.67 16 9 C -0.55 -29.58 7.68 25.60 0.20 -29.38 16 10 H 0.05 2.46 7.81 -2.92 -0.02 2.44 16 11 C 0.04 2.22 5.09 84.66 0.43 2.65 16 12 N -0.81 -46.67 8.32 21.45 0.18 -46.49 16 13 Si 0.92 44.41 29.54 68.60 2.03 46.44 16 14 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 15 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 16 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 17 C 0.22 11.00 6.29 138.13 0.87 11.86 16 18 N -0.46 -24.41 8.18 -188.13 -1.54 -25.95 16 19 C -0.09 -4.21 11.87 83.52 0.99 -3.22 16 20 C -0.08 -3.17 11.58 83.09 0.96 -2.21 16 21 N -0.48 -19.19 3.15 -537.61 -1.69 -20.89 16 22 C 0.07 1.99 10.83 127.77 1.38 3.37 16 23 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.08 2.03 8.12 -2.39 -0.02 2.01 16 25 H 0.06 2.02 6.47 -2.39 -0.02 2.00 16 26 H 0.07 1.61 8.12 -2.38 -0.02 1.59 16 27 H 0.08 1.63 8.12 -2.39 -0.02 1.61 16 28 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.01 0.54 8.12 -2.39 -0.02 0.52 16 30 H 0.07 2.41 8.06 -2.39 -0.02 2.39 16 31 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.05 2.34 5.79 -2.39 -0.01 2.32 16 33 H 0.07 3.67 5.96 -2.39 -0.01 3.66 16 34 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 36 H 0.16 6.30 8.06 -2.91 -0.02 6.28 16 37 H 0.20 5.31 8.06 -2.91 -0.02 5.28 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.08 2.28 7.05 -2.39 -0.02 2.26 16 Total: -1.00 -66.95 318.23 3.13 -63.81 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.99 Total: 16.49 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 7.93 Total: -11.62 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -7.82 Total: -115.11 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -66.95 3.13 -63.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799142.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.864 kcal (2) G-P(sol) polarization free energy of solvation -66.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds