Wall clock time and date at job start Mon Mar 30 2020 04:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99443 * 2 1 3 5 5 C 1.34950 * 126.04333 * 275.00595 * 4 2 1 6 6 C 1.35311 * 107.75007 * 179.97438 * 5 4 2 7 7 C 1.39867 * 107.92020 * 359.97438 * 6 5 4 8 8 C 1.50708 * 125.89856 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47207 * 125.00260 * 8 7 6 10 10 H 1.08995 * 109.47467 * 54.99297 * 9 8 7 11 11 C 1.52999 * 109.47245 * 175.00108 * 9 8 7 12 12 N 1.46898 * 109.46651 * 294.99672 * 9 8 7 13 13 C 1.46909 * 110.99818 * 155.00356 * 12 9 8 14 14 C 1.50698 * 109.47102 * 180.02562 * 13 12 9 15 15 H 1.08001 * 120.00206 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99977 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99886 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99969 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47408 * 89.99797 * 18 16 14 20 20 H 1.48503 * 109.47225 * 209.99931 * 18 16 14 21 21 H 1.48505 * 109.47129 * 330.00179 * 18 16 14 22 22 N 1.30841 * 108.20525 * 359.74420 * 7 6 5 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 1.07997 * 126.12467 * 359.94949 * 5 4 2 31 31 H 1.07999 * 126.04395 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.46763 * 244.99780 * 8 7 6 33 33 H 1.08990 * 109.47006 * 4.99489 * 8 7 6 34 34 H 1.09007 * 109.46902 * 299.99322 * 11 9 8 35 35 H 1.08998 * 109.47265 * 59.99675 * 11 9 8 36 36 H 1.08995 * 109.47100 * 179.97438 * 11 9 8 37 37 H 1.00900 * 111.00542 * 278.95494 * 12 9 8 38 38 H 1.08995 * 109.46957 * 299.99693 * 13 12 9 39 39 H 1.08998 * 109.47426 * 59.99890 * 13 12 9 40 40 H 0.97004 * 119.99700 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1932 -0.1392 2.4155 6 6 2.6559 -1.1051 3.2424 7 6 2.7670 -2.2874 2.5035 8 6 3.2441 -3.6167 3.0294 9 6 2.1870 -4.6861 2.7468 10 1 1.9573 -4.6973 1.6814 11 6 2.7224 -6.0562 3.1677 12 7 0.9676 -4.3821 3.5074 13 6 -0.2145 -4.9715 2.8644 14 6 -1.4433 -4.6388 3.6709 15 1 -1.3550 -4.0490 4.5713 16 6 -2.6804 -5.0875 3.2593 17 7 -2.7881 -5.8053 2.1626 18 14 -4.2035 -4.6757 4.2594 19 1 -4.7823 -3.3966 3.7759 20 1 -5.2049 -5.7615 4.1060 21 1 -3.8340 -4.5418 5.6915 22 7 2.3796 -2.0415 1.2782 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.9991 0.8890 2.6831 31 1 2.8968 -0.9845 4.2883 32 1 4.1772 -3.8889 2.5361 33 1 3.4091 -3.5440 4.1043 34 1 3.6272 -6.2817 2.6032 35 1 2.9520 -6.0449 4.2331 36 1 1.9691 -6.8179 2.9667 37 1 1.0512 -4.6923 4.4639 38 1 -0.3204 -4.5667 1.8580 39 1 -0.0971 -6.0538 2.8102 40 1 -3.6585 -6.1206 1.8729 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309598674.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:08 Heat of formation + Delta-G solvation = 37.561140 kcal Electronic energy + Delta-G solvation = -18654.641580 eV Core-core repulsion = 15890.541616 eV Total energy + Delta-G solvation = -2764.099963 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.98718 -38.33429 -36.58749 -35.02215 -32.70459 -30.94110 -30.62495 -28.23640 -27.91483 -27.68847 -24.01352 -23.52407 -21.86524 -20.96053 -20.30292 -18.49491 -17.90652 -16.84580 -16.12963 -15.99221 -15.77212 -15.34374 -15.04739 -14.68125 -14.37907 -14.10472 -13.92171 -13.78881 -13.45162 -13.23939 -13.11076 -13.06828 -12.90548 -12.69098 -12.42548 -12.35843 -12.23429 -12.04770 -11.96374 -11.75406 -11.30716 -11.17559 -10.68208 -9.96083 -9.26455 -8.96516 -8.23158 -6.34602 1.18098 1.36993 1.39587 1.51169 1.78133 2.10514 2.37922 3.09334 3.56392 3.67202 3.91463 3.96317 4.07452 4.11294 4.17403 4.39714 4.48841 4.56115 4.62310 4.72380 4.80572 4.87580 4.88920 4.92963 4.96075 5.05764 5.06671 5.15786 5.20310 5.22799 5.29726 5.36482 5.43991 5.61743 5.96964 6.04523 6.39727 6.51742 6.77665 6.97156 7.04402 7.36432 8.88644 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.016136 B = 0.006499 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.879682 B = 4307.453412 C = 5432.213223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.148 3.852 3 C -0.149 4.149 4 N -0.377 5.377 5 C 0.053 3.947 6 C -0.284 4.284 7 C 0.086 3.914 8 C -0.019 4.019 9 C 0.088 3.912 10 H 0.038 0.962 11 C -0.169 4.169 12 N -0.675 5.675 13 C 0.221 3.779 14 C -0.531 4.531 15 H 0.063 0.937 16 C -0.002 4.002 17 N -0.937 5.937 18 Si 0.973 3.027 19 H -0.276 1.276 20 H -0.279 1.279 21 H -0.260 1.260 22 N -0.345 5.345 23 H 0.024 0.976 24 H 0.103 0.897 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.202 0.798 31 H 0.158 0.842 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.030 0.970 37 H 0.335 0.665 38 H -0.021 1.021 39 H -0.041 1.041 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.198 13.650 -0.568 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.047 3.953 3 C -0.207 4.207 4 N -0.159 5.159 5 C -0.093 4.093 6 C -0.313 4.313 7 C -0.079 4.079 8 C -0.059 4.059 9 C -0.024 4.024 10 H 0.056 0.944 11 C -0.228 4.228 12 N -0.305 5.305 13 C 0.093 3.907 14 C -0.569 4.569 15 H 0.081 0.919 16 C -0.199 4.199 17 N -0.577 5.577 18 Si 0.797 3.203 19 H -0.201 1.201 20 H -0.205 1.205 21 H -0.184 1.184 22 N -0.168 5.168 23 H 0.043 0.957 24 H 0.122 0.878 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.218 0.782 31 H 0.176 0.824 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.152 0.848 38 H -0.003 1.003 39 H -0.023 1.023 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.752 13.789 -2.279 18.260 hybrid contribution -0.981 -0.955 0.959 1.671 sum 10.771 12.834 -1.320 16.807 Atomic orbital electron populations 1.22206 0.94158 1.01332 1.04116 1.21463 0.94490 0.94339 0.85032 1.22124 1.01933 0.91524 1.05124 1.49008 1.50897 1.06476 1.09563 1.22875 1.00145 1.01037 0.85274 1.21619 1.15268 0.92516 1.01896 1.22387 0.97455 0.97057 0.91036 1.20089 0.96713 0.87255 1.01804 1.21488 0.90440 0.93599 0.96832 0.94351 1.22389 1.01127 0.96498 1.02812 1.60566 1.01731 1.63119 1.05129 1.19028 0.88469 0.90093 0.93099 1.21547 0.92492 1.32809 1.10043 0.91851 1.25999 1.02775 0.94779 0.96378 1.70121 1.25308 1.37522 1.24768 0.85327 0.77941 0.77771 0.79222 1.20122 1.20474 1.18356 1.77183 1.22938 0.94564 1.22073 0.95711 0.87796 0.91924 0.89174 0.90540 0.91627 0.87817 0.78167 0.82446 0.88908 0.88370 0.90337 0.90610 0.95090 0.84786 1.00311 1.02312 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 9.52 71.98 0.69 -3.38 16 2 C 0.15 3.58 3.93 44.99 0.18 3.75 16 3 C -0.15 -2.16 8.84 71.98 0.64 -1.52 16 4 N -0.38 -12.00 3.53 -327.50 -1.15 -13.16 16 5 C 0.05 1.46 10.59 83.54 0.88 2.35 16 6 C -0.28 -8.80 10.72 21.99 0.24 -8.57 16 7 C 0.09 3.10 6.22 43.10 0.27 3.37 16 8 C -0.02 -0.60 5.47 29.85 0.16 -0.43 16 9 C 0.09 3.37 2.56 44.91 0.12 3.49 16 10 H 0.04 1.75 7.73 -2.39 -0.02 1.73 16 11 C -0.17 -5.42 9.16 71.98 0.66 -4.76 16 12 N -0.68 -31.05 5.95 -495.59 -2.95 -34.00 16 13 C 0.22 12.79 5.24 85.55 0.45 13.24 16 14 C -0.53 -31.95 9.32 25.60 0.24 -31.71 16 15 H 0.06 3.70 7.81 -2.91 -0.02 3.67 16 16 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 17 N -0.94 -59.45 13.29 21.45 0.28 -59.17 16 18 Si 0.97 46.01 29.54 68.60 2.03 48.04 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 22 N -0.35 -13.65 12.48 -47.38 -0.59 -14.24 16 23 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.08 0.95 7.16 -2.39 -0.02 0.94 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.20 3.71 7.26 -2.91 -0.02 3.69 16 31 H 0.16 4.08 8.06 -2.91 -0.02 4.06 16 32 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.10 2.62 8.12 -2.39 -0.02 2.60 16 34 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.07 2.08 8.13 -2.39 -0.02 2.06 16 36 H 0.03 1.14 7.45 -2.39 -0.02 1.12 16 37 H 0.33 14.28 8.46 -89.69 -0.76 13.52 16 38 H -0.02 -1.40 8.05 -2.39 -0.02 -1.42 16 39 H -0.04 -2.50 7.44 -2.39 -0.02 -2.52 16 40 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -76.90 332.26 2.83 -74.07 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.24 Total: 22.28 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 4.97 Total: -23.82 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -4.41 Total: -120.57 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -76.90 2.83 -74.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309598674.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.631 kcal (2) G-P(sol) polarization free energy of solvation -76.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds