Wall clock time and date at job start Mon Mar 30 2020 04:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46920 * 2 1 4 4 N 1.46503 * 109.46851 * 119.99727 * 2 1 3 5 5 C 1.34954 * 126.03805 * 274.99826 * 4 2 1 6 6 C 1.35309 * 107.74532 * 180.02562 * 5 4 2 7 7 C 1.39864 * 107.92418 * 0.02562 * 6 5 4 8 8 C 1.50702 * 125.90170 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.46916 * 124.99745 * 8 7 6 10 10 H 1.08993 * 109.47416 * 304.99906 * 9 8 7 11 11 C 1.53001 * 109.46848 * 184.99962 * 9 8 7 12 12 N 1.46901 * 109.47245 * 65.00412 * 9 8 7 13 13 C 1.46895 * 110.99816 * 204.99659 * 12 9 8 14 14 C 1.50706 * 109.47182 * 179.97438 * 13 12 9 15 15 H 1.08000 * 119.99302 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00436 * 179.72677 * 14 13 12 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46683 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47426 * 119.99743 * 18 16 14 21 21 H 1.48501 * 109.46833 * 239.99986 * 18 16 14 22 22 N 1.30843 * 108.19940 * 0.26047 * 7 6 5 23 23 H 1.09003 * 109.47214 * 60.00688 * 1 2 3 24 24 H 1.09003 * 109.47220 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47380 * 300.00010 * 1 2 3 26 26 H 1.08997 * 109.47488 * 239.99516 * 2 1 3 27 27 H 1.09001 * 109.47042 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47199 * 299.99555 * 3 2 1 29 29 H 1.08997 * 109.47435 * 59.99484 * 3 2 1 30 30 H 1.08006 * 126.12485 * 359.96943 * 5 4 2 31 31 H 1.07998 * 126.03867 * 179.97438 * 6 5 4 32 32 H 1.08998 * 109.46861 * 5.00056 * 8 7 6 33 33 H 1.09001 * 109.47362 * 245.00146 * 8 7 6 34 34 H 1.09003 * 109.47118 * 179.97438 * 11 9 8 35 35 H 1.08998 * 109.47489 * 300.00028 * 11 9 8 36 36 H 1.09000 * 109.47208 * 60.00447 * 11 9 8 37 37 H 1.00902 * 110.99849 * 328.95038 * 12 9 8 38 38 H 1.09001 * 109.47613 * 60.00104 * 13 12 9 39 39 H 1.08998 * 109.47678 * 300.00000 * 13 12 9 40 40 H 0.97004 * 120.00247 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1932 -0.1392 2.4155 6 6 2.6569 -1.1049 3.2422 7 6 2.7696 -2.2867 2.5028 8 6 3.2481 -3.6156 3.0284 9 6 2.1924 -4.6861 2.7451 10 1 1.2358 -4.3725 3.1628 11 6 2.6207 -6.0073 3.3870 12 7 2.0568 -4.8683 1.2937 13 6 0.7283 -5.3929 0.9509 14 6 0.6265 -5.5657 -0.5428 15 1 1.4652 -5.3116 -1.1740 16 6 -0.5349 -6.0539 -1.1028 17 7 -1.5538 -6.3694 -0.3335 18 14 -0.6607 -6.2688 -2.9541 19 1 0.6131 -5.8455 -3.5892 20 1 -0.9217 -7.6960 -3.2703 21 1 -1.7738 -5.4349 -3.4746 22 7 2.3927 -2.0381 1.2748 23 1 -0.3634 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.9990 0.8890 2.6832 31 1 2.8981 -0.9841 4.2879 32 1 3.4128 -3.5432 4.1034 33 1 4.1817 -3.8865 2.5353 34 1 1.8683 -6.7698 3.1856 35 1 3.5773 -6.3209 2.9693 36 1 2.7212 -5.8722 4.4640 37 1 2.2434 -4.0070 0.8022 38 1 -0.0368 -4.6936 1.2883 39 1 0.5808 -6.3561 1.4393 40 1 -2.3708 -6.7133 -0.7274 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309598675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:11 Heat of formation + Delta-G solvation = 63.875932 kcal Electronic energy + Delta-G solvation = -18813.703896 eV Core-core repulsion = 16050.745028 eV Total energy + Delta-G solvation = -2762.958868 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05776 -36.78942 -35.40457 -32.87625 -30.94156 -29.91780 -29.40801 -27.41959 -26.53164 -25.81062 -22.70446 -21.62346 -20.27158 -19.76257 -19.16238 -16.97210 -16.25339 -15.17191 -14.95646 -14.59823 -14.43196 -14.12696 -13.72828 -13.23302 -13.06178 -12.98415 -12.50034 -12.25072 -12.17439 -11.94288 -11.72007 -11.44950 -11.38969 -11.27332 -11.16658 -10.91596 -10.80498 -10.48080 -10.28644 -10.03714 -9.61395 -9.00898 -8.89151 -8.36511 -8.32071 -7.00992 -5.91448 -3.91259 2.14776 2.65414 3.06427 3.36036 3.42827 3.49218 4.45366 4.52441 4.77242 4.86616 4.95991 5.00618 5.29332 5.32662 5.43348 5.44483 5.52148 5.58598 5.68983 5.72272 5.85734 5.87742 5.96999 6.08942 6.16410 6.18825 6.31175 6.32836 6.54624 6.73436 6.89787 6.94718 7.26338 7.49260 7.66381 7.94895 8.04381 8.31466 8.71159 8.96324 9.21231 9.72509 11.20079 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.015517 B = 0.007278 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.089230 B = 3846.128245 C = 5289.224255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.154 3.846 3 C -0.161 4.161 4 N -0.365 5.365 5 C 0.048 3.952 6 C -0.274 4.274 7 C 0.072 3.928 8 C -0.042 4.042 9 C 0.086 3.914 10 H 0.032 0.968 11 C -0.134 4.134 12 N -0.689 5.689 13 C 0.198 3.802 14 C -0.502 4.502 15 H 0.061 0.939 16 C 0.053 3.947 17 N -0.901 5.901 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.286 1.286 22 N -0.276 5.276 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.104 0.896 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.166 0.834 31 H 0.142 0.858 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.043 0.957 37 H 0.346 0.654 38 H -0.020 1.020 39 H 0.024 0.976 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.334 15.381 5.845 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.052 3.948 3 C -0.219 4.219 4 N -0.147 5.147 5 C -0.098 4.098 6 C -0.304 4.304 7 C -0.094 4.094 8 C -0.081 4.081 9 C -0.026 4.026 10 H 0.049 0.951 11 C -0.193 4.193 12 N -0.326 5.326 13 C 0.071 3.929 14 C -0.541 4.541 15 H 0.079 0.921 16 C -0.147 4.147 17 N -0.541 5.541 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.213 1.213 22 N -0.097 5.097 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.122 0.878 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.183 0.817 31 H 0.160 0.840 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.169 0.831 38 H -0.003 1.003 39 H 0.042 0.958 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.225 14.320 4.514 16.662 hybrid contribution -0.841 1.067 0.011 1.359 sum 6.383 15.387 4.525 17.262 Atomic orbital electron populations 1.22243 0.93540 1.04192 1.02464 1.21245 0.94993 0.92286 0.86297 1.22177 1.02080 0.94338 1.03335 1.48871 1.50190 1.07393 1.08234 1.22327 1.01745 0.99599 0.86118 1.21332 1.15180 0.92724 1.01126 1.22439 0.99060 0.96562 0.91363 1.20352 0.99618 0.87956 1.00175 1.21382 0.95663 0.93271 0.92266 0.95051 1.21749 1.01975 0.97612 0.97922 1.60866 1.33620 1.35074 1.03049 1.19494 0.83137 0.94294 0.95948 1.21256 0.98893 1.41778 0.92162 0.92116 1.24977 0.95781 0.95903 0.98074 1.69987 1.04217 1.45198 1.34722 0.86488 0.77852 0.77648 0.85719 1.19684 1.21053 1.21272 1.77289 1.20075 0.92598 1.19766 0.90666 0.90755 0.92295 0.87752 0.91648 0.90127 0.91795 0.81705 0.84021 0.90127 0.89750 0.92391 0.92443 0.93764 0.83070 1.00260 0.95781 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 9.52 37.16 0.35 -1.67 16 2 C 0.15 1.89 3.93 -67.93 -0.27 1.62 16 3 C -0.16 -1.33 8.83 37.16 0.33 -1.01 16 4 N -0.36 -5.56 3.53 -54.86 -0.19 -5.75 16 5 C 0.05 0.63 10.59 -17.22 -0.18 0.45 16 6 C -0.27 -3.90 10.72 -40.02 -0.43 -4.33 16 7 C 0.07 1.24 6.44 -82.40 -0.53 0.71 16 8 C -0.04 -0.67 5.39 -27.88 -0.15 -0.82 16 9 C 0.09 1.69 2.64 -67.71 -0.18 1.51 16 10 H 0.03 0.68 7.80 -51.93 -0.40 0.27 16 11 C -0.13 -2.35 9.41 37.16 0.35 -2.00 16 12 N -0.69 -16.60 6.30 -107.99 -0.68 -17.28 16 13 C 0.20 5.66 5.24 -4.98 -0.03 5.63 16 14 C -0.50 -15.20 9.32 -34.44 -0.32 -15.52 16 15 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -28.14 13.29 55.43 0.74 -27.40 16 18 Si 0.89 22.62 29.54 -169.99 -5.02 17.60 16 19 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 N -0.28 -5.25 10.11 33.67 0.34 -4.91 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.46 7.16 -51.93 -0.37 0.09 16 30 H 0.17 1.49 7.26 -52.48 -0.38 1.11 16 31 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.08 1.05 8.12 -51.93 -0.42 0.62 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.12 7.45 -51.93 -0.39 0.74 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.35 8.37 5.57 -39.29 -0.22 8.15 16 38 H -0.02 -0.63 8.06 -51.93 -0.42 -1.05 16 39 H 0.02 0.73 7.44 -51.93 -0.39 0.34 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 327.88 15.07 4.94 4.94 Total: -1.00 -34.40 327.88 -7.79 -42.19 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.76 Total: 4.54 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -1.15 Total: -13.94 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.20 Total: -55.33 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.40 -7.79 -42.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309598675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.066 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds