Wall clock time and date at job start Mon Mar 30 2020 04:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46920 * 2 1 4 4 N 1.46503 * 109.46851 * 119.99727 * 2 1 3 5 5 C 1.34954 * 126.03805 * 274.99826 * 4 2 1 6 6 C 1.35309 * 107.74532 * 180.02562 * 5 4 2 7 7 C 1.39864 * 107.92418 * 0.02562 * 6 5 4 8 8 C 1.50702 * 125.90170 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.46916 * 124.99745 * 8 7 6 10 10 H 1.08993 * 109.47416 * 304.99906 * 9 8 7 11 11 C 1.53001 * 109.46848 * 184.99962 * 9 8 7 12 12 N 1.46901 * 109.47245 * 65.00412 * 9 8 7 13 13 C 1.46895 * 110.99816 * 204.99659 * 12 9 8 14 14 C 1.50706 * 109.47182 * 179.97438 * 13 12 9 15 15 H 1.08000 * 119.99302 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00436 * 179.72677 * 14 13 12 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46683 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47426 * 119.99743 * 18 16 14 21 21 H 1.48501 * 109.46833 * 239.99986 * 18 16 14 22 22 N 1.30843 * 108.19940 * 0.26047 * 7 6 5 23 23 H 1.09003 * 109.47214 * 60.00688 * 1 2 3 24 24 H 1.09003 * 109.47220 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47380 * 300.00010 * 1 2 3 26 26 H 1.08997 * 109.47488 * 239.99516 * 2 1 3 27 27 H 1.09001 * 109.47042 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47199 * 299.99555 * 3 2 1 29 29 H 1.08997 * 109.47435 * 59.99484 * 3 2 1 30 30 H 1.08006 * 126.12485 * 359.96943 * 5 4 2 31 31 H 1.07998 * 126.03867 * 179.97438 * 6 5 4 32 32 H 1.08998 * 109.46861 * 5.00056 * 8 7 6 33 33 H 1.09001 * 109.47362 * 245.00146 * 8 7 6 34 34 H 1.09003 * 109.47118 * 179.97438 * 11 9 8 35 35 H 1.08998 * 109.47489 * 300.00028 * 11 9 8 36 36 H 1.09000 * 109.47208 * 60.00447 * 11 9 8 37 37 H 1.00902 * 110.99849 * 328.95038 * 12 9 8 38 38 H 1.09001 * 109.47613 * 60.00104 * 13 12 9 39 39 H 1.08998 * 109.47678 * 300.00000 * 13 12 9 40 40 H 0.97004 * 120.00247 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1932 -0.1392 2.4155 6 6 2.6569 -1.1049 3.2422 7 6 2.7696 -2.2867 2.5028 8 6 3.2481 -3.6156 3.0284 9 6 2.1924 -4.6861 2.7451 10 1 1.2358 -4.3725 3.1628 11 6 2.6207 -6.0073 3.3870 12 7 2.0568 -4.8683 1.2937 13 6 0.7283 -5.3929 0.9509 14 6 0.6265 -5.5657 -0.5428 15 1 1.4652 -5.3116 -1.1740 16 6 -0.5349 -6.0539 -1.1028 17 7 -1.5538 -6.3694 -0.3335 18 14 -0.6607 -6.2688 -2.9541 19 1 0.6131 -5.8455 -3.5892 20 1 -0.9217 -7.6960 -3.2703 21 1 -1.7738 -5.4349 -3.4746 22 7 2.3927 -2.0381 1.2748 23 1 -0.3634 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.9990 0.8890 2.6832 31 1 2.8981 -0.9841 4.2879 32 1 3.4128 -3.5432 4.1034 33 1 4.1817 -3.8865 2.5353 34 1 1.8683 -6.7698 3.1856 35 1 3.5773 -6.3209 2.9693 36 1 2.7212 -5.8722 4.4640 37 1 2.2434 -4.0070 0.8022 38 1 -0.0368 -4.6936 1.2883 39 1 0.5808 -6.3561 1.4393 40 1 -2.3708 -6.7133 -0.7274 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309598675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:11 Heat of formation + Delta-G solvation = 40.280663 kcal Electronic energy + Delta-G solvation = -18814.727064 eV Core-core repulsion = 16050.745028 eV Total energy + Delta-G solvation = -2763.982036 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.18916 -38.34851 -36.58304 -35.04266 -32.64104 -31.21903 -30.70638 -28.28103 -28.04669 -27.72262 -24.18237 -23.36266 -21.72701 -20.92046 -20.49749 -18.54033 -17.98455 -16.76982 -16.66459 -16.09033 -15.75118 -15.50586 -15.09937 -14.54835 -14.43240 -14.11210 -13.98705 -13.68486 -13.53685 -13.17152 -13.11275 -13.05791 -12.85868 -12.78245 -12.42117 -12.36382 -12.29951 -12.09847 -11.97637 -11.84449 -11.24473 -11.18601 -10.69175 -10.14807 -9.42892 -9.03620 -8.24851 -6.35991 1.04612 1.34421 1.36721 1.51089 1.63220 1.90399 2.36993 3.07016 3.49722 3.69989 3.83474 3.92354 3.93981 4.08843 4.14183 4.34468 4.43286 4.57983 4.60383 4.75347 4.77560 4.83889 4.86438 4.93579 4.95118 4.96939 5.08189 5.12832 5.14926 5.20068 5.27724 5.31794 5.45008 5.61295 5.75700 6.04322 6.27354 6.54480 6.78008 6.85999 7.08567 7.34957 8.87561 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.015517 B = 0.007278 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.089230 B = 3846.128245 C = 5289.224255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 C -0.148 4.148 4 N -0.370 5.370 5 C 0.059 3.941 6 C -0.284 4.284 7 C 0.050 3.950 8 C -0.032 4.032 9 C 0.081 3.919 10 H 0.006 0.994 11 C -0.128 4.128 12 N -0.690 5.690 13 C 0.220 3.780 14 C -0.530 4.530 15 H 0.056 0.944 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.974 3.026 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.274 1.274 22 N -0.341 5.341 23 H 0.101 0.899 24 H 0.022 0.978 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.211 0.789 31 H 0.171 0.829 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.027 0.973 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.347 0.653 38 H -0.060 1.060 39 H -0.002 1.002 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.211 17.447 5.898 20.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.042 3.958 3 C -0.206 4.206 4 N -0.153 5.153 5 C -0.087 4.087 6 C -0.313 4.313 7 C -0.115 4.115 8 C -0.071 4.071 9 C -0.030 4.030 10 H 0.024 0.976 11 C -0.186 4.186 12 N -0.327 5.327 13 C 0.092 3.908 14 C -0.569 4.569 15 H 0.074 0.926 16 C -0.198 4.198 17 N -0.576 5.576 18 Si 0.798 3.202 19 H -0.189 1.189 20 H -0.198 1.198 21 H -0.200 1.200 22 N -0.164 5.164 23 H 0.120 0.880 24 H 0.042 0.958 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.102 0.898 30 H 0.228 0.772 31 H 0.188 0.812 32 H 0.138 0.862 33 H 0.105 0.895 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.170 0.830 38 H -0.043 1.043 39 H 0.016 0.984 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.121 16.387 4.583 18.854 hybrid contribution -1.147 0.473 0.045 1.241 sum 6.974 16.860 4.628 18.824 Atomic orbital electron populations 1.22198 0.93725 1.01352 1.04483 1.21527 0.94874 0.94428 0.84934 1.22127 1.01921 0.91168 1.05383 1.49126 1.49930 1.06423 1.09822 1.23062 0.99591 1.01281 0.84780 1.21718 1.15337 0.91718 1.02558 1.22760 0.99359 0.97840 0.91567 1.20323 0.97870 0.86356 1.02568 1.21546 0.96076 0.96035 0.89356 0.97612 1.21710 1.01147 0.95301 1.00404 1.60826 1.30315 1.35307 1.06212 1.19069 0.84432 0.92069 0.95237 1.21520 0.99441 1.42979 0.92931 0.92578 1.25989 0.94969 0.94813 1.04002 1.70118 1.04870 1.45250 1.37360 0.85271 0.78338 0.78187 0.78435 1.18873 1.19782 1.19974 1.77140 1.22400 0.95334 1.21494 0.88007 0.95847 0.90911 0.89826 0.91749 0.87944 0.89844 0.77210 0.81160 0.86220 0.89524 0.95340 0.91604 0.89682 0.83040 1.04288 0.98386 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 9.52 71.98 0.69 -3.20 16 2 C 0.14 3.47 3.93 44.99 0.18 3.64 16 3 C -0.15 -2.03 8.83 71.98 0.64 -1.40 16 4 N -0.37 -11.20 3.53 -327.49 -1.15 -12.36 16 5 C 0.06 1.40 10.59 83.54 0.88 2.29 16 6 C -0.28 -7.54 10.72 21.99 0.24 -7.30 16 7 C 0.05 1.72 6.44 43.10 0.28 2.00 16 8 C -0.03 -1.01 5.39 29.85 0.16 -0.85 16 9 C 0.08 3.28 2.64 44.92 0.12 3.40 16 10 H 0.01 0.26 7.80 -2.39 -0.02 0.25 16 11 C -0.13 -4.46 9.41 71.98 0.68 -3.79 16 12 N -0.69 -34.98 6.30 -495.58 -3.12 -38.10 16 13 C 0.22 13.40 5.24 85.56 0.45 13.85 16 14 C -0.53 -33.52 9.32 25.60 0.24 -33.28 16 15 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 16 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 17 N -0.94 -60.17 13.29 21.45 0.28 -59.88 16 18 Si 0.97 47.13 29.54 68.60 2.03 49.15 16 19 H -0.26 -12.38 7.11 99.48 0.71 -11.68 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 22 N -0.34 -13.40 10.11 -47.38 -0.48 -13.88 16 23 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 0.84 7.16 -2.39 -0.02 0.82 16 30 H 0.21 2.84 7.26 -2.91 -0.02 2.82 16 31 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 32 H 0.12 2.79 8.12 -2.39 -0.02 2.77 16 33 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.03 1.13 7.45 -2.39 -0.02 1.11 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.35 17.69 5.57 -89.69 -0.50 17.19 16 38 H -0.06 -4.06 8.06 -2.39 -0.02 -4.08 16 39 H 0.00 -0.13 7.44 -2.39 -0.02 -0.14 16 40 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -79.99 327.88 3.06 -76.93 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.50 Total: 22.32 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: 5.00 Total: -24.18 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -4.47 Total: -124.22 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.15 kcal Total: -79.99 3.06 -76.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309598675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.209 kcal (2) G-P(sol) polarization free energy of solvation -79.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds