Wall clock time and date at job start Mon Mar 30 2020 04:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47376 * 2 1 4 4 H 1.08998 * 109.46555 * 55.00089 * 3 2 1 5 5 C 1.52996 * 109.47345 * 175.00104 * 3 2 1 6 6 N 1.46902 * 109.47283 * 295.00293 * 3 2 1 7 7 C 1.46891 * 111.00182 * 154.99705 * 6 3 2 8 8 C 1.50699 * 109.47272 * 179.97438 * 7 6 3 9 9 C 1.35318 * 126.04085 * 260.02644 * 8 7 6 10 10 N 1.34949 * 107.74247 * 179.97438 * 9 8 7 11 11 C 1.46506 * 126.03292 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.46726 * 124.99938 * 11 10 9 13 13 H 1.08005 * 120.00478 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99831 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99654 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00104 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47378 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47434 * 119.99655 * 16 14 12 19 19 H 1.48498 * 109.46893 * 239.99977 * 16 14 12 20 20 N 1.40085 * 107.93019 * 359.97438 * 10 9 8 21 21 C 1.30839 * 108.20364 * 359.97438 * 20 10 9 22 22 C 1.50696 * 125.89907 * 180.26451 * 21 20 10 23 23 H 1.08997 * 109.47115 * 59.99482 * 1 2 3 24 24 H 1.08998 * 109.47278 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47034 * 300.00095 * 1 2 3 26 26 H 1.09007 * 109.47134 * 240.00362 * 2 1 3 27 27 H 1.09004 * 109.47509 * 120.00441 * 2 1 3 28 28 H 1.08998 * 109.47291 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.46931 * 300.00239 * 5 3 2 30 30 H 1.09001 * 109.47136 * 59.99701 * 5 3 2 31 31 H 1.00901 * 110.99651 * 278.95796 * 6 3 2 32 32 H 1.09001 * 109.47010 * 59.99722 * 7 6 3 33 33 H 1.09001 * 109.47405 * 300.00002 * 7 6 3 34 34 H 1.07997 * 126.12712 * 359.94181 * 9 8 7 35 35 H 1.08998 * 109.47019 * 244.99934 * 11 10 9 36 36 H 1.09005 * 109.47133 * 5.00060 * 11 10 9 37 37 H 0.97001 * 119.99266 * 179.97438 * 15 14 12 38 38 H 1.09007 * 109.47193 * 269.69534 * 22 21 20 39 39 H 1.09004 * 109.47030 * 29.69122 * 22 21 20 40 40 H 1.08994 * 109.47335 * 149.69218 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 7 1.6514 2.0994 -1.2552 7 6 1.5726 3.5562 -1.0846 8 6 1.1729 4.1940 -2.3901 9 6 2.0070 4.7903 -3.2732 10 7 1.2625 5.2317 -4.3086 11 6 1.7628 5.9382 -5.4905 12 6 1.3287 5.2064 -6.7342 13 1 0.7387 4.3054 -6.6526 14 6 1.6847 5.6871 -7.9766 15 7 2.4027 6.7845 -8.0760 16 14 1.1460 4.7805 -9.5184 17 1 0.3532 3.5839 -9.1376 18 1 0.3133 5.6802 -10.3563 19 1 2.3437 4.3561 -10.2869 20 7 -0.0732 4.8950 -4.0537 21 6 -0.1256 4.2724 -2.9041 22 6 -1.3695 3.7292 -2.2493 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.9281 2.4720 0.1261 29 1 3.8532 0.9570 1.0571 30 1 3.9994 0.9053 -0.7161 31 1 2.2852 1.8564 -2.0017 32 1 2.5455 3.9391 -0.7764 33 1 0.8307 3.7932 -0.3219 34 1 3.0767 4.8948 -3.1679 35 1 1.3605 6.9511 -5.5057 36 1 2.8515 5.9802 -5.4549 37 1 2.6534 7.1224 -8.9500 38 1 -1.8059 4.4944 -1.6072 39 1 -2.0895 3.4450 -3.0167 40 1 -1.1128 2.8555 -1.6505 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381349066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:45 Heat of formation + Delta-G solvation = 50.542846 kcal Electronic energy + Delta-G solvation = -18333.866094 eV Core-core repulsion = 15570.329060 eV Total energy + Delta-G solvation = -2763.537034 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.41000 -37.55076 -34.04859 -32.89379 -32.03343 -30.19096 -29.13304 -28.30128 -26.20445 -24.42284 -23.30172 -22.17111 -20.60332 -19.92398 -18.71583 -16.54187 -15.87930 -15.59433 -14.83397 -14.53338 -14.24813 -14.21295 -13.61823 -13.33808 -13.11866 -12.84823 -12.68721 -12.47104 -12.31115 -11.99400 -11.71289 -11.64933 -11.42842 -11.29621 -11.10252 -10.87789 -10.86522 -10.74971 -10.61875 -10.22850 -9.76346 -9.48730 -8.64671 -8.33161 -8.18000 -7.52526 -6.24242 -4.28811 2.80743 3.23040 3.30577 3.37511 3.38771 3.66691 4.32727 4.49477 4.75623 5.03385 5.10956 5.17361 5.34766 5.37352 5.42655 5.50348 5.59125 5.62789 5.71009 5.82354 5.90403 5.93746 6.00664 6.08829 6.09665 6.10971 6.22459 6.35247 6.46622 6.51619 6.69781 6.98574 7.10019 7.25957 7.51307 7.59980 7.72218 7.89560 8.07476 8.69851 8.83285 9.37040 10.84823 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.026593 B = 0.004431 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.651218 B = 6317.110965 C = 6352.447245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C 0.081 3.919 4 H 0.074 0.926 5 C -0.183 4.183 6 N -0.677 5.677 7 C 0.150 3.850 8 C -0.264 4.264 9 C 0.052 3.948 10 N -0.327 5.327 11 C 0.257 3.743 12 C -0.526 4.526 13 H 0.070 0.930 14 C 0.061 3.939 15 N -0.896 5.896 16 Si 0.908 3.092 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.282 1.282 20 N -0.285 5.285 21 C 0.061 3.939 22 C -0.063 4.063 23 H 0.071 0.929 24 H 0.042 0.958 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.341 0.659 32 H 0.025 0.975 33 H 0.069 0.931 34 H 0.158 0.842 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.266 0.734 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.323 -9.346 16.211 18.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.030 4.030 4 H 0.092 0.908 5 C -0.242 4.242 6 N -0.308 5.308 7 C 0.021 3.979 8 C -0.276 4.276 9 C -0.099 4.099 10 N -0.105 5.105 11 C 0.139 3.861 12 C -0.564 4.564 13 H 0.088 0.912 14 C -0.141 4.141 15 N -0.535 5.535 16 Si 0.735 3.265 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.208 1.208 20 N -0.109 5.109 21 C -0.104 4.104 22 C -0.122 4.122 23 H 0.090 0.910 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.160 0.840 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.176 0.824 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.885 -8.776 15.015 17.415 hybrid contribution 1.499 -0.329 -0.286 1.561 sum 0.614 -9.106 14.729 17.328 Atomic orbital electron populations 1.21661 0.95412 1.00541 1.02542 1.21492 0.96702 0.95510 1.01097 1.21611 0.92656 0.95506 0.93195 0.90798 1.22523 0.97864 1.01805 1.02037 1.60638 1.55912 1.08371 1.05907 1.19959 0.98305 0.85926 0.93717 1.19535 0.92940 1.14220 1.00949 1.22254 0.97786 1.00073 0.89830 1.49307 1.03733 1.41108 1.16386 1.19700 0.94880 0.92260 0.79270 1.21294 1.34451 1.11149 0.89534 0.91229 1.24951 0.94748 0.95063 0.99352 1.69935 1.37227 1.21354 1.24971 0.86271 0.78450 0.79804 0.82004 1.19483 1.20658 1.20789 1.77358 0.98134 1.19353 1.16069 1.22003 0.95308 0.99587 0.93482 1.20026 0.92690 1.00192 0.99308 0.91047 0.93867 0.93561 0.92159 0.92587 0.92743 0.92494 0.92493 0.84013 0.95658 0.91255 0.82440 0.93840 0.92980 0.92412 0.91999 0.91871 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.80 37.15 0.36 -1.04 16 2 C -0.11 -1.03 5.61 -26.73 -0.15 -1.18 16 3 C 0.08 0.80 2.59 -67.71 -0.18 0.62 16 4 H 0.07 0.73 7.80 -51.93 -0.41 0.32 16 5 C -0.18 -1.65 9.16 37.16 0.34 -1.31 16 6 N -0.68 -8.24 5.69 -108.00 -0.61 -8.86 16 7 C 0.15 2.00 5.60 -4.98 -0.03 1.97 16 8 C -0.26 -4.58 5.61 -105.05 -0.59 -5.17 16 9 C 0.05 0.99 11.36 -17.22 -0.20 0.80 16 10 N -0.33 -7.60 3.67 -62.54 -0.23 -7.83 16 11 C 0.26 6.62 6.26 -5.19 -0.03 6.58 16 12 C -0.53 -14.86 9.24 -34.44 -0.32 -15.18 16 13 H 0.07 2.05 7.81 -52.48 -0.41 1.64 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.90 -25.64 13.29 55.43 0.74 -24.90 16 16 Si 0.91 21.63 29.54 -169.99 -5.02 16.61 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 N -0.28 -6.68 12.41 33.67 0.42 -6.27 16 21 C 0.06 1.19 7.22 -82.40 -0.59 0.59 16 22 C -0.06 -0.96 10.26 36.00 0.37 -0.59 16 23 H 0.07 0.82 7.75 -51.93 -0.40 0.41 16 24 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.51 7.45 -51.93 -0.39 0.12 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 31 H 0.34 4.41 8.46 -39.29 -0.33 4.08 16 32 H 0.03 0.32 7.43 -51.93 -0.39 -0.07 16 33 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16 34 H 0.16 2.53 8.06 -52.49 -0.42 2.11 16 35 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 1.32 8.07 -51.93 -0.42 0.90 16 37 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.08 1.05 7.97 -51.93 -0.41 0.63 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -29.76 334.51 -7.71 -37.47 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.94 Total: 1.01 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.11 Total: -12.28 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.31 Total: -47.85 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.76 -7.71 -37.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381349066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.017 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds