Wall clock time and date at job start Mon Mar 30 2020 04:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47376 * 2 1 4 4 H 1.08998 * 109.46555 * 55.00089 * 3 2 1 5 5 C 1.52996 * 109.47345 * 175.00104 * 3 2 1 6 6 N 1.46902 * 109.47283 * 295.00293 * 3 2 1 7 7 C 1.46891 * 111.00182 * 154.99705 * 6 3 2 8 8 C 1.50699 * 109.47272 * 179.97438 * 7 6 3 9 9 C 1.35318 * 126.04085 * 260.02644 * 8 7 6 10 10 N 1.34949 * 107.74247 * 179.97438 * 9 8 7 11 11 C 1.46506 * 126.03292 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.46726 * 124.99938 * 11 10 9 13 13 H 1.08005 * 120.00478 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99831 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99654 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00104 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47378 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47434 * 119.99655 * 16 14 12 19 19 H 1.48498 * 109.46893 * 239.99977 * 16 14 12 20 20 N 1.40085 * 107.93019 * 359.97438 * 10 9 8 21 21 C 1.30839 * 108.20364 * 359.97438 * 20 10 9 22 22 C 1.50696 * 125.89907 * 180.26451 * 21 20 10 23 23 H 1.08997 * 109.47115 * 59.99482 * 1 2 3 24 24 H 1.08998 * 109.47278 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47034 * 300.00095 * 1 2 3 26 26 H 1.09007 * 109.47134 * 240.00362 * 2 1 3 27 27 H 1.09004 * 109.47509 * 120.00441 * 2 1 3 28 28 H 1.08998 * 109.47291 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.46931 * 300.00239 * 5 3 2 30 30 H 1.09001 * 109.47136 * 59.99701 * 5 3 2 31 31 H 1.00901 * 110.99651 * 278.95796 * 6 3 2 32 32 H 1.09001 * 109.47010 * 59.99722 * 7 6 3 33 33 H 1.09001 * 109.47405 * 300.00002 * 7 6 3 34 34 H 1.07997 * 126.12712 * 359.94181 * 9 8 7 35 35 H 1.08998 * 109.47019 * 244.99934 * 11 10 9 36 36 H 1.09005 * 109.47133 * 5.00060 * 11 10 9 37 37 H 0.97001 * 119.99266 * 179.97438 * 15 14 12 38 38 H 1.09007 * 109.47193 * 269.69534 * 22 21 20 39 39 H 1.09004 * 109.47030 * 29.69122 * 22 21 20 40 40 H 1.08994 * 109.47335 * 149.69218 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 7 1.6514 2.0994 -1.2552 7 6 1.5726 3.5562 -1.0846 8 6 1.1729 4.1940 -2.3901 9 6 2.0070 4.7903 -3.2732 10 7 1.2625 5.2317 -4.3086 11 6 1.7628 5.9382 -5.4905 12 6 1.3287 5.2064 -6.7342 13 1 0.7387 4.3054 -6.6526 14 6 1.6847 5.6871 -7.9766 15 7 2.4027 6.7845 -8.0760 16 14 1.1460 4.7805 -9.5184 17 1 0.3532 3.5839 -9.1376 18 1 0.3133 5.6802 -10.3563 19 1 2.3437 4.3561 -10.2869 20 7 -0.0732 4.8950 -4.0537 21 6 -0.1256 4.2724 -2.9041 22 6 -1.3695 3.7292 -2.2493 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.9281 2.4720 0.1261 29 1 3.8532 0.9570 1.0571 30 1 3.9994 0.9053 -0.7161 31 1 2.2852 1.8564 -2.0017 32 1 2.5455 3.9391 -0.7764 33 1 0.8307 3.7932 -0.3219 34 1 3.0767 4.8948 -3.1679 35 1 1.3605 6.9511 -5.5057 36 1 2.8515 5.9802 -5.4549 37 1 2.6534 7.1224 -8.9500 38 1 -1.8059 4.4944 -1.6072 39 1 -2.0895 3.4450 -3.0167 40 1 -1.1128 2.8555 -1.6505 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381349066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:45 Heat of formation + Delta-G solvation = 32.264628 kcal Electronic energy + Delta-G solvation = -18334.658697 eV Core-core repulsion = 15570.329060 eV Total energy + Delta-G solvation = -2764.329637 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.96621 -38.43943 -35.87252 -34.32445 -33.50686 -31.31245 -30.66888 -29.48989 -27.87404 -25.76120 -24.35967 -23.71554 -21.49667 -21.36379 -20.24495 -18.62572 -17.54582 -16.52661 -16.35690 -15.83670 -15.76519 -15.34930 -14.81298 -14.50269 -14.30668 -14.18074 -14.01946 -13.66608 -13.55295 -13.29038 -13.21046 -12.85761 -12.83266 -12.68450 -12.49979 -12.35419 -12.22380 -11.88393 -11.68306 -11.55233 -11.44337 -11.11555 -10.75618 -9.98687 -9.21869 -9.00748 -8.36288 -6.50484 1.23086 1.34548 1.36666 1.49897 1.95792 1.98676 2.33394 2.95216 3.52848 3.94402 4.00446 4.05170 4.29571 4.35966 4.47084 4.50238 4.64535 4.65091 4.74915 4.82307 4.89721 4.91334 4.93350 4.94288 5.03622 5.16272 5.20242 5.28516 5.31372 5.36359 5.40571 5.47237 5.56169 5.68214 5.80898 6.05459 6.29778 6.38869 6.60330 6.64374 7.15187 7.20115 8.71822 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.026593 B = 0.004431 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.651218 B = 6317.110965 C = 6352.447245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C 0.083 3.917 4 H 0.080 0.920 5 C -0.179 4.179 6 N -0.683 5.683 7 C 0.158 3.842 8 C -0.249 4.249 9 C 0.042 3.958 10 N -0.356 5.356 11 C 0.272 3.728 12 C -0.546 4.546 13 H 0.049 0.951 14 C 0.018 3.982 15 N -0.922 5.922 16 Si 0.973 3.027 17 H -0.275 1.275 18 H -0.272 1.272 19 H -0.267 1.267 20 N -0.342 5.342 21 C 0.061 3.939 22 C -0.059 4.059 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.336 0.664 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.184 0.816 35 H 0.015 0.985 36 H 0.051 0.949 37 H 0.273 0.727 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.501 -10.774 17.668 20.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.026 4.026 4 H 0.098 0.902 5 C -0.238 4.238 6 N -0.314 5.314 7 C 0.029 3.971 8 C -0.261 4.261 9 C -0.107 4.107 10 N -0.136 5.136 11 C 0.153 3.847 12 C -0.584 4.584 13 H 0.068 0.932 14 C -0.182 4.182 15 N -0.561 5.561 16 Si 0.797 3.203 17 H -0.200 1.200 18 H -0.198 1.198 19 H -0.192 1.192 20 N -0.167 5.167 21 C -0.105 4.105 22 C -0.117 4.117 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.154 0.846 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.201 0.799 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.697 -10.213 16.506 19.423 hybrid contribution 1.422 0.072 -0.607 1.548 sum 0.725 -10.141 15.899 18.872 Atomic orbital electron populations 1.21632 0.95677 1.00772 1.01889 1.21487 0.96411 0.95201 1.01497 1.21647 0.93357 0.95559 0.92067 0.90162 1.22467 0.96992 1.01728 1.02609 1.60601 1.56253 1.07597 1.06963 1.19946 0.99296 0.86464 0.91400 1.19975 0.91730 1.12615 1.01796 1.22861 0.99199 0.99628 0.88985 1.49020 1.04408 1.43189 1.16961 1.19211 0.94425 0.91000 0.80060 1.21410 1.34844 1.10935 0.91207 0.93247 1.25761 0.94503 0.95761 1.02196 1.70008 1.37661 1.22292 1.26094 0.85286 0.78449 0.78374 0.78232 1.20009 1.19752 1.19234 1.77281 0.98770 1.21952 1.18665 1.22792 0.97581 0.97734 0.92346 1.20148 0.90890 1.01325 0.99346 0.92931 0.93301 0.92861 0.92983 0.90946 0.93052 0.91119 0.92898 0.84610 0.94314 0.89996 0.79866 0.96686 0.93084 0.91810 0.89925 0.92303 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.80 71.98 0.71 -1.74 16 2 C -0.11 -1.75 5.61 30.59 0.17 -1.57 16 3 C 0.08 1.41 2.59 44.92 0.12 1.53 16 4 H 0.08 1.30 7.80 -2.39 -0.02 1.28 16 5 C -0.18 -2.73 9.16 71.98 0.66 -2.07 16 6 N -0.68 -15.11 5.69 -495.59 -2.82 -17.93 16 7 C 0.16 3.80 5.60 85.56 0.48 4.27 16 8 C -0.25 -8.34 5.61 -20.14 -0.11 -8.46 16 9 C 0.04 1.61 11.36 83.54 0.95 2.56 16 10 N -0.36 -17.07 3.67 -351.78 -1.29 -18.36 16 11 C 0.27 14.65 6.26 85.63 0.54 15.19 16 12 C -0.55 -31.85 9.24 25.60 0.24 -31.61 16 13 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 14 C 0.02 1.02 5.46 84.66 0.46 1.48 16 15 N -0.92 -53.36 13.29 21.45 0.28 -53.07 16 16 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 N -0.34 -16.47 12.41 -47.38 -0.59 -17.06 16 21 C 0.06 2.33 7.22 43.10 0.31 2.64 16 22 C -0.06 -1.67 10.26 71.23 0.73 -0.94 16 23 H 0.05 1.10 7.75 -2.39 -0.02 1.08 16 24 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 0.82 7.45 -2.39 -0.02 0.80 16 29 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.05 0.85 8.13 -2.39 -0.02 0.83 16 31 H 0.34 8.13 8.46 -89.69 -0.76 7.37 16 32 H 0.04 0.85 7.43 -2.39 -0.02 0.83 16 33 H 0.08 1.80 8.06 -2.39 -0.02 1.78 16 34 H 0.18 5.74 8.06 -2.91 -0.02 5.71 16 35 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.05 2.69 8.07 -2.38 -0.02 2.67 16 37 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 38 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 39 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.10 2.38 7.97 -2.39 -0.02 2.36 16 Total: -1.00 -65.36 334.51 3.10 -62.26 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.24 Total: 16.20 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 5.24 Total: -18.74 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -4.41 Total: -106.41 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -65.36 3.10 -62.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381349066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.528 kcal (2) G-P(sol) polarization free energy of solvation -65.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds