Wall clock time and date at job start Mon Mar 30 2020 04:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47332 * 2 1 4 4 C 1.53003 * 109.47258 * 119.99796 * 2 1 3 5 5 N 1.46499 * 109.47006 * 64.99940 * 4 2 1 6 6 C 1.36887 * 126.39910 * 265.03042 * 5 4 2 7 7 C 1.34672 * 106.81700 * 179.97438 * 6 5 4 8 8 N 1.34127 * 108.01948 * 0.22851 * 7 6 5 9 9 C 1.30502 * 109.25683 * 359.61488 * 8 7 6 10 10 C 1.50700 * 125.64425 * 180.14781 * 9 8 7 11 11 N 1.46904 * 109.47168 * 270.27392 * 10 9 8 12 12 C 1.46900 * 110.99829 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47202 * 34.99915 * 12 11 10 14 14 C 1.53001 * 109.46860 * 274.99760 * 12 11 10 15 15 C 1.50699 * 109.47009 * 154.99817 * 12 11 10 16 16 H 1.07999 * 120.00315 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00066 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99836 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00285 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.46961 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47179 * 120.00107 * 19 17 15 22 22 H 1.48497 * 109.46906 * 240.00457 * 19 17 15 23 23 H 1.09002 * 109.47010 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47213 * 300.00543 * 1 2 3 25 25 H 1.09003 * 109.46636 * 60.00267 * 1 2 3 26 26 H 1.09001 * 109.47698 * 239.99656 * 2 1 3 27 27 H 1.09002 * 109.47036 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46613 * 299.99753 * 3 2 1 29 29 H 1.08997 * 109.46828 * 59.99955 * 3 2 1 30 30 H 1.09007 * 109.47029 * 305.00511 * 4 2 1 31 31 H 1.08998 * 109.47395 * 184.99901 * 4 2 1 32 32 H 1.07997 * 126.58796 * 359.97438 * 6 5 4 33 33 H 1.08002 * 125.98510 * 179.97438 * 7 6 5 34 34 H 1.08994 * 109.47481 * 30.27445 * 10 9 8 35 35 H 1.09006 * 109.46847 * 150.28064 * 10 9 8 36 36 H 1.00905 * 110.99902 * 303.96014 * 11 10 9 37 37 H 1.09003 * 109.47213 * 180.02562 * 14 12 11 38 38 H 1.09001 * 109.47339 * 300.00070 * 14 12 11 39 39 H 1.09001 * 109.46930 * 60.00232 * 14 12 11 40 40 H 0.96999 * 120.00062 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.5423 -2.6947 1.7613 7 6 0.5730 -4.0076 1.4629 8 7 1.6746 -4.2418 0.7344 9 6 2.3233 -3.1225 0.5630 10 6 3.6109 -2.9622 -0.2034 11 7 4.7489 -3.1563 0.7051 12 6 6.0240 -3.0064 -0.0089 13 1 5.9220 -2.2407 -0.7779 14 6 6.4025 -4.3375 -0.6615 15 6 7.1002 -2.6003 0.9647 16 1 6.8610 -2.4673 2.0095 17 6 8.3904 -2.3997 0.5219 18 7 8.6818 -2.5622 -0.7502 19 14 9.7246 -1.8970 1.7289 20 1 9.1427 -1.7822 3.0903 21 1 10.7985 -2.9225 1.7349 22 1 10.2931 -0.5872 1.3209 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6053 -0.2617 2.1370 31 1 3.1263 -0.6443 1.2952 32 1 -0.2130 -2.1834 2.3396 33 1 -0.1587 -4.7436 1.7618 34 1 3.6531 -3.7029 -1.0019 35 1 3.6557 -1.9615 -0.6332 36 1 4.6974 -2.5236 1.4894 37 1 7.3488 -4.2265 -1.1909 38 1 6.5045 -5.1033 0.1075 39 1 5.6240 -4.6312 -1.3657 40 1 9.5894 -2.4206 -1.0618 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381358799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:12 Heat of formation + Delta-G solvation = 46.768843 kcal Electronic energy + Delta-G solvation = -18832.154846 eV Core-core repulsion = 16068.454158 eV Total energy + Delta-G solvation = -2763.700687 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.87301 -36.71422 -35.95389 -32.77309 -32.40914 -30.21880 -27.93025 -27.36790 -26.41198 -25.35401 -24.16613 -21.11982 -20.84878 -19.81754 -19.32845 -17.07511 -16.31652 -15.55613 -15.32142 -14.92864 -14.35544 -14.01884 -13.82050 -13.62559 -13.18461 -13.02391 -12.92830 -12.50059 -12.25778 -12.08007 -11.82365 -11.47861 -11.22567 -11.17070 -11.00955 -10.90952 -10.75864 -10.30176 -10.12883 -10.05166 -9.58024 -9.31256 -8.85978 -8.51341 -8.09641 -7.32751 -6.05580 -4.12284 2.28431 2.96834 3.26466 3.34836 3.38548 3.47941 4.37848 4.47000 4.57781 4.74463 4.83903 5.03307 5.06771 5.25354 5.28843 5.38182 5.44866 5.48482 5.60278 5.61242 5.67571 5.75395 5.87023 5.99559 6.03756 6.09644 6.24045 6.56618 6.87530 7.03438 7.15764 7.22051 7.41361 7.50530 7.74959 7.86057 8.24818 8.32808 8.48106 8.59923 8.97206 9.53772 11.00653 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.022211 B = 0.005607 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.320746 B = 4992.607326 C = 5642.112431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.146 4.146 4 C 0.106 3.894 5 N -0.452 5.452 6 C -0.067 4.067 7 C -0.033 4.033 8 N -0.481 5.481 9 C 0.230 3.770 10 C 0.143 3.857 11 N -0.677 5.677 12 C 0.213 3.787 13 H 0.002 0.998 14 C -0.125 4.125 15 C -0.518 4.518 16 H 0.060 0.940 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.896 3.104 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.285 1.285 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.166 0.834 33 H 0.164 0.836 34 H 0.094 0.906 35 H 0.033 0.967 36 H 0.327 0.673 37 H 0.081 0.919 38 H 0.033 0.967 39 H 0.007 0.993 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.412 7.076 2.159 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.204 4.204 4 C -0.017 4.017 5 N -0.135 5.135 6 C -0.200 4.200 7 C -0.182 4.182 8 N -0.199 5.199 9 C -0.034 4.034 10 C 0.012 3.988 11 N -0.309 5.309 12 C 0.106 3.894 13 H 0.020 0.980 14 C -0.184 4.184 15 C -0.557 4.557 16 H 0.078 0.922 17 C -0.139 4.139 18 N -0.527 5.527 19 Si 0.724 3.276 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.211 1.211 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.183 0.817 33 H 0.181 0.819 34 H 0.112 0.888 35 H 0.051 0.949 36 H 0.144 0.856 37 H 0.099 0.901 38 H 0.052 0.948 39 H 0.026 0.974 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.973 5.777 1.673 16.135 hybrid contribution 0.424 1.988 0.921 2.231 sum -14.549 7.765 2.593 16.694 Atomic orbital electron populations 1.21859 0.94636 1.02240 1.01769 1.21500 0.96719 0.96853 0.98098 1.21782 1.01808 0.94628 1.02149 1.21996 1.02029 0.78244 0.99391 1.45448 1.19426 1.08587 1.40042 1.22513 0.94216 0.95668 1.07634 1.22249 0.98478 0.94231 1.03214 1.70285 1.06381 1.24999 1.18271 1.23482 0.97349 0.82809 0.99712 1.20286 0.84357 0.99873 0.94320 1.60732 1.01893 1.58066 1.10190 1.19152 0.84003 0.93555 0.92686 0.98012 1.21717 1.00615 0.97592 0.98441 1.21259 0.93546 1.46232 0.94629 0.92232 1.24908 0.98508 0.95269 0.95230 1.69908 1.19874 1.49192 1.13730 0.86469 0.81780 0.78061 0.81256 1.19796 1.20891 1.21103 0.92234 0.92706 0.92431 0.90272 0.91822 0.92020 0.92450 0.89202 0.88754 0.81653 0.81918 0.88791 0.94910 0.85580 0.90059 0.94781 0.97437 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.94 37.15 0.33 -1.01 16 2 C -0.11 -1.15 3.13 -90.62 -0.28 -1.43 16 3 C -0.15 -1.28 9.19 37.16 0.34 -0.94 16 4 C 0.11 1.21 5.08 -4.04 -0.02 1.19 16 5 N -0.45 -6.40 2.47 -113.90 -0.28 -6.69 16 6 C -0.07 -0.88 10.25 -16.56 -0.17 -1.05 16 7 C -0.03 -0.50 11.87 -17.81 -0.21 -0.71 16 8 N -0.48 -9.09 11.25 -10.81 -0.12 -9.21 16 9 C 0.23 4.05 7.41 -155.42 -1.15 2.90 16 10 C 0.14 2.70 5.63 -4.97 -0.03 2.67 16 11 N -0.68 -14.79 6.29 -109.22 -0.69 -15.48 16 12 C 0.21 5.36 2.60 -68.86 -0.18 5.18 16 13 H 0.00 0.06 7.80 -51.93 -0.40 -0.34 16 14 C -0.13 -3.17 9.19 37.16 0.34 -2.83 16 15 C -0.52 -14.06 8.59 -34.44 -0.30 -14.35 16 16 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 19 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 H 0.06 0.62 6.75 -51.93 -0.35 0.27 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.95 7.75 -51.93 -0.40 0.55 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 1.18 7.92 -51.93 -0.41 0.77 16 32 H 0.17 1.57 8.06 -52.49 -0.42 1.14 16 33 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 34 H 0.09 1.87 7.44 -51.93 -0.39 1.48 16 35 H 0.03 0.58 7.34 -51.93 -0.38 0.20 16 36 H 0.33 6.95 8.22 -39.29 -0.32 6.63 16 37 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 38 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.01 0.16 7.45 -51.93 -0.39 -0.23 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 325.15 15.07 4.90 4.90 Total: -1.00 -30.37 325.15 -8.70 -39.08 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.70 Total: 4.60 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -1.42 Total: -8.77 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.46 Total: -55.84 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.37 -8.70 -39.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381358799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.844 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds