Wall clock time and date at job start Mon Mar 30 2020 04:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47332 * 2 1 4 4 C 1.53003 * 109.47258 * 119.99796 * 2 1 3 5 5 N 1.46499 * 109.47006 * 64.99940 * 4 2 1 6 6 C 1.36887 * 126.39910 * 265.03042 * 5 4 2 7 7 C 1.34672 * 106.81700 * 179.97438 * 6 5 4 8 8 N 1.34127 * 108.01948 * 0.22851 * 7 6 5 9 9 C 1.30502 * 109.25683 * 359.61488 * 8 7 6 10 10 C 1.50700 * 125.64425 * 180.14781 * 9 8 7 11 11 N 1.46904 * 109.47168 * 270.27392 * 10 9 8 12 12 C 1.46900 * 110.99829 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47202 * 34.99915 * 12 11 10 14 14 C 1.53001 * 109.46860 * 274.99760 * 12 11 10 15 15 C 1.50699 * 109.47009 * 154.99817 * 12 11 10 16 16 H 1.07999 * 120.00315 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00066 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99836 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00285 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.46961 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47179 * 120.00107 * 19 17 15 22 22 H 1.48497 * 109.46906 * 240.00457 * 19 17 15 23 23 H 1.09002 * 109.47010 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47213 * 300.00543 * 1 2 3 25 25 H 1.09003 * 109.46636 * 60.00267 * 1 2 3 26 26 H 1.09001 * 109.47698 * 239.99656 * 2 1 3 27 27 H 1.09002 * 109.47036 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46613 * 299.99753 * 3 2 1 29 29 H 1.08997 * 109.46828 * 59.99955 * 3 2 1 30 30 H 1.09007 * 109.47029 * 305.00511 * 4 2 1 31 31 H 1.08998 * 109.47395 * 184.99901 * 4 2 1 32 32 H 1.07997 * 126.58796 * 359.97438 * 6 5 4 33 33 H 1.08002 * 125.98510 * 179.97438 * 7 6 5 34 34 H 1.08994 * 109.47481 * 30.27445 * 10 9 8 35 35 H 1.09006 * 109.46847 * 150.28064 * 10 9 8 36 36 H 1.00905 * 110.99902 * 303.96014 * 11 10 9 37 37 H 1.09003 * 109.47213 * 180.02562 * 14 12 11 38 38 H 1.09001 * 109.47339 * 300.00070 * 14 12 11 39 39 H 1.09001 * 109.46930 * 60.00232 * 14 12 11 40 40 H 0.96999 * 120.00062 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.5423 -2.6947 1.7613 7 6 0.5730 -4.0076 1.4629 8 7 1.6746 -4.2418 0.7344 9 6 2.3233 -3.1225 0.5630 10 6 3.6109 -2.9622 -0.2034 11 7 4.7489 -3.1563 0.7051 12 6 6.0240 -3.0064 -0.0089 13 1 5.9220 -2.2407 -0.7779 14 6 6.4025 -4.3375 -0.6615 15 6 7.1002 -2.6003 0.9647 16 1 6.8610 -2.4673 2.0095 17 6 8.3904 -2.3997 0.5219 18 7 8.6818 -2.5622 -0.7502 19 14 9.7246 -1.8970 1.7289 20 1 9.1427 -1.7822 3.0903 21 1 10.7985 -2.9225 1.7349 22 1 10.2931 -0.5872 1.3209 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6053 -0.2617 2.1370 31 1 3.1263 -0.6443 1.2952 32 1 -0.2130 -2.1834 2.3396 33 1 -0.1587 -4.7436 1.7618 34 1 3.6531 -3.7029 -1.0019 35 1 3.6557 -1.9615 -0.6332 36 1 4.6974 -2.5236 1.4894 37 1 7.3488 -4.2265 -1.1909 38 1 6.5045 -5.1033 0.1075 39 1 5.6240 -4.6312 -1.3657 40 1 9.5894 -2.4206 -1.0618 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381358799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:12 Heat of formation + Delta-G solvation = 28.446352 kcal Electronic energy + Delta-G solvation = -18832.949368 eV Core-core repulsion = 16068.454158 eV Total energy + Delta-G solvation = -2764.495210 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.04467 -37.83794 -37.56197 -34.70372 -33.47536 -31.87979 -29.51341 -28.10055 -27.52096 -27.27531 -25.77557 -22.24750 -21.94367 -21.62057 -20.54264 -18.65050 -17.82749 -16.97930 -16.51482 -16.36582 -15.93677 -15.42431 -15.08384 -14.84623 -14.50440 -14.31073 -14.08100 -13.80133 -13.55398 -13.19242 -13.08352 -12.88330 -12.78395 -12.68296 -12.32313 -12.27084 -12.21464 -11.99130 -11.96818 -11.77087 -10.92493 -10.82007 -10.59302 -10.46955 -9.31620 -9.09284 -8.14175 -6.28582 1.12544 1.41173 1.43993 1.55076 1.89552 2.23194 2.41950 3.14662 3.46322 3.62329 3.71905 3.76963 3.92430 4.08863 4.23388 4.37205 4.45007 4.55293 4.61918 4.67020 4.76165 4.79428 4.89946 4.92470 4.94365 5.07652 5.15490 5.18140 5.27404 5.34440 5.42408 5.46053 5.64250 5.81197 5.93342 6.18543 6.26935 6.40815 6.68256 6.93005 7.27894 7.41644 8.91807 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.022211 B = 0.005607 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.320746 B = 4992.607326 C = 5642.112431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C -0.142 4.142 4 C 0.102 3.898 5 N -0.444 5.444 6 C -0.039 4.039 7 C -0.061 4.061 8 N -0.521 5.521 9 C 0.200 3.800 10 C 0.153 3.847 11 N -0.678 5.678 12 C 0.219 3.781 13 H -0.021 1.021 14 C -0.115 4.115 15 C -0.536 4.536 16 H 0.058 0.942 17 C 0.016 3.984 18 N -0.916 5.916 19 Si 0.963 3.037 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.277 1.277 23 H 0.044 0.956 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.078 0.922 32 H 0.211 0.789 33 H 0.186 0.814 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.330 0.670 37 H 0.061 0.939 38 H 0.024 0.976 39 H 0.020 0.980 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.815 8.599 3.854 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 C -0.200 4.200 4 C -0.020 4.020 5 N -0.126 5.126 6 C -0.173 4.173 7 C -0.208 4.208 8 N -0.240 5.240 9 C -0.063 4.063 10 C 0.022 3.978 11 N -0.310 5.310 12 C 0.111 3.889 13 H -0.003 1.003 14 C -0.173 4.173 15 C -0.574 4.574 16 H 0.076 0.924 17 C -0.184 4.184 18 N -0.555 5.555 19 Si 0.789 3.211 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.203 1.203 23 H 0.064 0.936 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.140 0.860 31 H 0.097 0.903 32 H 0.227 0.773 33 H 0.203 0.797 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.148 0.852 37 H 0.080 0.920 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.386 7.316 3.366 18.258 hybrid contribution 0.757 1.519 0.387 1.741 sum -15.629 8.835 3.753 18.342 Atomic orbital electron populations 1.21811 0.93267 1.01682 1.03134 1.21450 0.97754 0.97231 0.96364 1.21754 1.00950 0.93792 1.03456 1.22239 1.01501 0.76930 1.01334 1.45569 1.19160 1.09110 1.38808 1.23172 0.93584 0.95044 1.05491 1.22749 0.98310 0.96078 1.03699 1.70176 1.08060 1.26276 1.19514 1.22942 0.97553 0.83929 1.01888 1.20051 0.84393 0.99694 0.93672 1.60607 1.01561 1.58295 1.10558 1.18934 0.85387 0.92482 0.92060 1.00307 1.21566 1.00031 0.97549 0.98183 1.21524 0.94459 1.46616 0.94810 0.92420 1.25708 1.00648 0.95134 0.96885 1.70024 1.20475 1.49685 1.15336 0.85430 0.78748 0.77787 0.79180 1.19181 1.20763 1.20301 0.93637 0.90590 0.91883 0.92892 0.93167 0.91334 0.90523 0.86037 0.90346 0.77254 0.79740 0.90488 0.94067 0.85237 0.92047 0.95700 0.96125 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.94 71.98 0.64 -1.53 16 2 C -0.11 -2.04 3.13 -10.79 -0.03 -2.07 16 3 C -0.14 -2.22 9.19 71.98 0.66 -1.55 16 4 C 0.10 2.11 5.08 86.38 0.44 2.55 16 5 N -0.44 -11.87 2.47 -514.27 -1.27 -13.15 16 6 C -0.04 -0.91 10.25 83.09 0.85 -0.06 16 7 C -0.06 -1.74 11.87 83.52 0.99 -0.75 16 8 N -0.52 -19.64 11.25 -188.13 -2.12 -21.76 16 9 C 0.20 7.05 7.41 138.13 1.02 8.08 16 10 C 0.15 5.95 5.63 85.56 0.48 6.44 16 11 N -0.68 -30.32 6.29 -499.45 -3.14 -33.46 16 12 C 0.22 11.34 2.60 44.17 0.11 11.46 16 13 H -0.02 -1.14 7.80 -2.39 -0.02 -1.16 16 14 C -0.11 -5.98 9.19 71.98 0.66 -5.32 16 15 C -0.54 -29.42 8.59 25.60 0.22 -29.20 16 16 H 0.06 3.12 7.62 -2.91 -0.02 3.10 16 17 C 0.02 0.86 5.30 84.65 0.45 1.31 16 18 N -0.92 -52.42 11.32 21.45 0.24 -52.18 16 19 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 23 H 0.04 0.83 6.75 -2.39 -0.02 0.82 16 24 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.05 1.27 7.75 -2.39 -0.02 1.25 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.08 1.90 7.92 -2.39 -0.02 1.88 16 32 H 0.21 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.19 4.18 8.06 -2.91 -0.02 4.16 16 34 H 0.08 3.21 7.44 -2.39 -0.02 3.19 16 35 H 0.04 1.52 7.34 -2.38 -0.02 1.50 16 36 H 0.33 14.25 8.22 -89.69 -0.74 13.51 16 37 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 38 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.02 0.96 7.45 -2.39 -0.02 0.94 16 40 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -66.17 325.15 2.51 -63.66 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.27 Total: 22.40 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 6.51 Total: -10.65 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -6.29 Total: -120.54 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -66.17 2.51 -63.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381358799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.103 kcal (2) G-P(sol) polarization free energy of solvation -66.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds