Wall clock time and date at job start Mon Mar 30 2020 04:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46882 * 2 1 4 4 C 1.52996 * 109.47474 * 119.99940 * 2 1 3 5 5 N 1.46504 * 109.46859 * 65.00236 * 4 2 1 6 6 C 1.36886 * 126.39554 * 265.02379 * 5 4 2 7 7 C 1.34670 * 106.81791 * 179.97438 * 6 5 4 8 8 N 1.34121 * 108.01612 * 359.77814 * 7 6 5 9 9 C 1.30494 * 109.26097 * 0.37093 * 8 7 6 10 10 C 1.50706 * 125.65087 * 179.89462 * 9 8 7 11 11 N 1.46908 * 109.46935 * 269.69093 * 10 9 8 12 12 C 1.46894 * 110.99837 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47104 * 324.99694 * 12 11 10 14 14 C 1.52997 * 109.47515 * 84.99962 * 12 11 10 15 15 C 1.50708 * 109.46991 * 205.00145 * 12 11 10 16 16 H 1.08000 * 119.99723 * 359.97438 * 15 12 11 17 17 C 1.37873 * 119.99930 * 179.97438 * 15 12 11 18 18 N 1.31509 * 120.00195 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99968 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46809 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46948 * 120.00245 * 19 17 15 22 22 H 1.48497 * 109.47378 * 240.00531 * 19 17 15 23 23 H 1.08996 * 109.47429 * 59.99879 * 1 2 3 24 24 H 1.09006 * 109.47091 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46861 * 299.99763 * 1 2 3 26 26 H 1.09003 * 109.46861 * 240.00237 * 2 1 3 27 27 H 1.08996 * 109.47158 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46870 * 300.00000 * 3 2 1 29 29 H 1.08994 * 109.47145 * 60.00180 * 3 2 1 30 30 H 1.08998 * 109.47043 * 305.00647 * 4 2 1 31 31 H 1.08997 * 109.47233 * 184.99907 * 4 2 1 32 32 H 1.08000 * 126.59099 * 0.02562 * 6 5 4 33 33 H 1.08001 * 125.98904 * 180.02562 * 7 6 5 34 34 H 1.08993 * 109.47103 * 149.69233 * 10 9 8 35 35 H 1.09002 * 109.47193 * 29.68749 * 10 9 8 36 36 H 1.00903 * 110.99526 * 303.95351 * 11 10 9 37 37 H 1.09002 * 109.47153 * 59.99762 * 14 12 11 38 38 H 1.09001 * 109.46832 * 299.99953 * 14 12 11 39 39 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 40 40 H 0.97006 * 120.00358 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6526 -2.1328 1.1905 6 6 0.5425 -2.6948 1.7612 7 6 0.5732 -4.0077 1.4628 8 7 1.6694 -4.2400 0.7258 9 6 2.3233 -3.1225 0.5627 10 6 3.6105 -2.9619 -0.2045 11 7 4.7491 -3.1554 0.7034 12 6 6.0237 -3.0053 -0.0113 13 1 5.9198 -3.3930 -1.0247 14 6 6.4051 -1.5247 -0.0684 15 6 7.0991 -3.7736 0.7127 16 1 6.8597 -4.3186 1.6139 17 6 8.3886 -3.7809 0.2247 18 7 8.6801 -3.1169 -0.8724 19 14 9.7218 -4.7326 1.1225 20 1 9.1398 -5.3887 2.3209 21 1 10.2865 -5.7662 0.2181 22 1 10.7986 -3.8001 1.5421 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6054 -0.2618 2.1369 31 1 3.1264 -0.6443 1.2950 32 1 -0.2132 -2.1834 2.3390 33 1 -0.1589 -4.7436 1.7610 34 1 3.6547 -1.9614 -0.6346 35 1 3.6525 -3.7028 -1.0029 36 1 4.6978 -2.5225 1.4876 37 1 6.5090 -1.1370 0.9450 38 1 5.6273 -0.9691 -0.5921 39 1 7.3512 -1.4134 -0.5983 40 1 9.5874 -3.1216 -1.2156 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381358845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:14 Heat of formation + Delta-G solvation = 29.512583 kcal Electronic energy + Delta-G solvation = -18859.007503 eV Core-core repulsion = 16094.558528 eV Total energy + Delta-G solvation = -2764.448975 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.04275 -37.92513 -37.55337 -34.68210 -33.47012 -31.89854 -29.41259 -28.08421 -27.38503 -27.24613 -25.75591 -22.31525 -22.14876 -21.70893 -20.52034 -18.52190 -17.81542 -16.87106 -16.54870 -16.36960 -15.94114 -15.34708 -15.15604 -14.62817 -14.53631 -14.39020 -13.94907 -13.75936 -13.56104 -13.25716 -13.15774 -12.89084 -12.84057 -12.69481 -12.40150 -12.31867 -12.17537 -11.96050 -11.93617 -11.76030 -11.07751 -10.80777 -10.49002 -10.46212 -9.30139 -9.00680 -8.10045 -6.20746 1.12948 1.41806 1.44252 1.56584 1.90056 2.23613 2.45583 3.18446 3.46667 3.63055 3.73371 3.78250 3.93421 4.09526 4.24160 4.36808 4.45345 4.55509 4.62205 4.66822 4.73684 4.77244 4.85232 4.90592 4.93155 4.95324 5.05569 5.16632 5.28000 5.35267 5.38069 5.45964 5.69408 5.79199 5.93596 6.23051 6.30693 6.59249 6.71938 6.91818 7.29085 7.48899 8.95485 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.026426 B = 0.005325 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.314834 B = 5256.906617 C = 6013.760259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C -0.141 4.141 4 C 0.102 3.898 5 N -0.444 5.444 6 C -0.039 4.039 7 C -0.062 4.062 8 N -0.524 5.524 9 C 0.200 3.800 10 C 0.153 3.847 11 N -0.679 5.679 12 C 0.217 3.783 13 H 0.004 0.996 14 C -0.153 4.153 15 C -0.515 4.515 16 H 0.049 0.951 17 C 0.012 3.988 18 N -0.920 5.920 19 Si 0.959 3.041 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.277 1.277 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.211 0.789 33 H 0.184 0.816 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.329 0.671 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.064 0.936 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.919 10.807 4.193 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 C -0.199 4.199 4 C -0.020 4.020 5 N -0.126 5.126 6 C -0.172 4.172 7 C -0.209 4.209 8 N -0.243 5.243 9 C -0.063 4.063 10 C 0.023 3.977 11 N -0.310 5.310 12 C 0.109 3.891 13 H 0.022 0.978 14 C -0.213 4.213 15 C -0.554 4.554 16 H 0.068 0.932 17 C -0.186 4.186 18 N -0.560 5.560 19 Si 0.785 3.215 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.202 1.202 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.139 0.861 31 H 0.099 0.901 32 H 0.228 0.772 33 H 0.201 0.799 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.146 0.854 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.501 9.545 3.707 19.420 hybrid contribution 0.743 0.886 0.262 1.186 sum -15.758 10.431 3.969 19.310 Atomic orbital electron populations 1.21820 0.93451 1.01626 1.03103 1.21452 0.97647 0.97295 0.96410 1.21751 1.01068 0.93685 1.03415 1.22252 1.01613 0.76819 1.01322 1.45568 1.19034 1.09106 1.38902 1.23160 0.93659 0.94939 1.05476 1.22738 0.98479 0.96167 1.03561 1.70176 1.08135 1.26526 1.19494 1.22960 0.97530 0.83959 1.01807 1.20027 0.84349 0.99863 0.93504 1.60620 1.01514 1.58406 1.10463 1.18975 0.85249 0.92336 0.92536 0.97756 1.22208 1.01652 0.97863 0.99534 1.21425 0.93554 1.29951 1.10439 0.93242 1.25654 1.00515 0.96577 0.95886 1.69995 1.20351 1.43159 1.22543 0.85485 0.78926 0.78475 0.78580 1.19742 1.20772 1.20219 0.91925 0.93737 0.90621 0.92807 0.92904 0.91425 0.90580 0.86067 0.90080 0.77219 0.79883 0.93476 0.91007 0.85370 0.94687 0.95102 0.91753 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.94 71.98 0.64 -1.45 16 2 C -0.11 -1.90 3.13 -10.79 -0.03 -1.94 16 3 C -0.14 -1.98 9.19 71.98 0.66 -1.32 16 4 C 0.10 1.96 5.08 86.38 0.44 2.40 16 5 N -0.44 -11.55 2.47 -514.29 -1.27 -12.82 16 6 C -0.04 -0.88 10.25 83.09 0.85 -0.03 16 7 C -0.06 -1.79 11.87 83.52 0.99 -0.80 16 8 N -0.52 -20.00 11.25 -188.14 -2.12 -22.11 16 9 C 0.20 7.03 7.42 138.13 1.02 8.06 16 10 C 0.15 5.90 5.63 85.56 0.48 6.38 16 11 N -0.68 -30.03 6.22 -499.44 -3.11 -33.14 16 12 C 0.22 11.09 2.57 44.17 0.11 11.20 16 13 H 0.00 0.26 7.80 -2.39 -0.02 0.24 16 14 C -0.15 -7.09 8.94 71.98 0.64 -6.45 16 15 C -0.51 -29.26 8.84 25.60 0.23 -29.04 16 16 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 17 C 0.01 0.67 5.30 84.65 0.45 1.12 16 18 N -0.92 -52.98 11.32 21.44 0.24 -52.74 16 19 Si 0.96 44.72 29.54 68.60 2.03 46.74 16 20 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.04 0.80 6.75 -2.38 -0.02 0.78 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 1.22 7.74 -2.39 -0.02 1.20 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.78 7.92 -2.39 -0.02 1.76 16 32 H 0.21 2.80 8.06 -2.91 -0.02 2.78 16 33 H 0.18 4.23 8.06 -2.91 -0.02 4.21 16 34 H 0.05 1.64 6.72 -2.39 -0.02 1.63 16 35 H 0.07 3.04 8.06 -2.39 -0.02 3.02 16 36 H 0.33 13.55 8.46 -89.69 -0.76 12.79 16 37 H 0.03 1.52 8.13 -2.39 -0.02 1.51 16 38 H 0.03 1.22 7.45 -2.39 -0.02 1.20 16 39 H 0.06 3.36 6.07 -2.38 -0.01 3.35 16 40 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 Total: -1.00 -67.74 325.47 2.51 -65.23 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.25 Total: 20.69 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 6.49 Total: -11.85 kcal Atomic # 7 Polarization: -114.55 SS G_CDS: -6.25 Total: -120.81 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -67.74 2.51 -65.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381358845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.744 kcal (2) G-P(sol) polarization free energy of solvation -67.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds