Wall clock time and date at job start Mon Mar 30 2020 04:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47143 * 2 1 4 4 H 1.08996 * 109.46750 * 305.57890 * 3 2 1 5 5 C 1.50697 * 109.47143 * 185.58210 * 3 2 1 6 6 H 1.08004 * 119.99891 * 245.72122 * 5 3 2 7 7 C 1.37879 * 119.99953 * 65.71783 * 5 3 2 8 8 N 1.31515 * 119.99870 * 194.56227 * 7 5 3 9 9 Si 1.86791 * 120.00014 * 14.56321 * 7 5 3 10 10 H 1.48501 * 109.47308 * 87.20778 * 9 7 5 11 11 H 1.48506 * 109.47221 * 207.20404 * 9 7 5 12 12 H 1.48495 * 109.47346 * 327.20501 * 9 7 5 13 13 N 1.46903 * 109.47084 * 65.58056 * 3 2 1 14 14 C 1.46897 * 110.99670 * 256.76653 * 13 3 2 15 15 H 1.09003 * 109.47264 * 42.44909 * 14 13 3 16 16 C 1.52998 * 109.47579 * 282.44365 * 14 13 3 17 17 C 1.53003 * 109.46965 * 162.44520 * 14 13 3 18 18 C 1.50703 * 109.46883 * 295.00126 * 17 14 13 19 19 C 1.39868 * 126.04138 * 269.68618 * 18 17 14 20 20 N 1.30839 * 108.20441 * 179.81974 * 19 18 17 21 21 N 1.40084 * 108.20417 * 0.44409 * 20 19 18 22 22 C 1.46498 * 126.03930 * 179.69986 * 21 20 19 23 23 C 1.34956 * 107.92409 * 359.71639 * 21 20 19 24 24 H 1.09004 * 109.46785 * 56.04933 * 1 2 3 25 25 H 1.09000 * 109.47252 * 296.04861 * 1 2 3 26 26 H 1.09000 * 109.47025 * 176.04066 * 1 2 3 27 27 H 1.09005 * 109.46578 * 119.99255 * 2 1 3 28 28 H 1.08993 * 109.47789 * 239.99364 * 2 1 3 29 29 H 0.97005 * 120.00058 * 180.02562 * 8 7 5 30 30 H 1.00895 * 111.00136 * 20.72694 * 13 3 2 31 31 H 1.08999 * 109.46721 * 59.99937 * 16 14 13 32 32 H 1.08998 * 109.47323 * 180.02562 * 16 14 13 33 33 H 1.09003 * 109.47267 * 300.00543 * 16 14 13 34 34 H 1.08998 * 109.47326 * 55.00113 * 17 14 13 35 35 H 1.09001 * 109.47330 * 175.00203 * 17 14 13 36 36 H 1.08001 * 125.89829 * 0.02562 * 19 18 17 37 37 H 1.09006 * 109.47189 * 270.02056 * 22 21 20 38 38 H 1.09000 * 109.47510 * 30.02050 * 22 21 20 39 39 H 1.08999 * 109.47444 * 150.02187 * 22 21 20 40 40 H 1.08003 * 126.12128 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5974 1.9843 -0.8358 5 6 3.5406 1.4448 -0.1382 6 1 4.1571 1.8023 0.6733 7 6 4.1266 0.9903 -1.3006 8 7 5.4135 0.7205 -1.3264 9 14 3.0925 0.7578 -2.8387 10 1 3.0321 2.0359 -3.5925 11 1 3.7045 -0.2918 -3.6927 12 1 1.7191 0.3445 -2.4541 13 7 1.6634 2.0951 1.2611 14 6 0.5219 2.9987 1.0658 15 1 -0.2147 2.5195 0.4208 16 6 1.0040 4.2959 0.4134 17 6 -0.1156 3.3153 2.4202 18 6 -0.6996 2.0561 3.0070 19 6 -2.0044 1.5886 2.8187 20 7 -2.1366 0.4679 3.4809 21 7 -0.9214 0.1916 4.1207 22 6 -0.6396 -0.9664 4.9725 23 6 -0.0563 1.1810 3.8142 24 1 -0.3633 0.5740 -0.8525 25 1 -0.3634 0.4513 0.9233 26 1 -0.3633 -1.0252 -0.0710 27 1 1.8933 -0.5138 0.8901 28 1 1.8934 -0.5139 -0.8898 29 1 5.8258 0.4012 -2.1443 30 1 1.4656 1.4119 1.9767 31 1 1.4581 4.0704 -0.5515 32 1 0.1570 4.9666 0.2689 33 1 1.7405 4.7751 1.0584 34 1 0.6428 3.7127 3.0947 35 1 -0.9057 4.0541 2.2862 36 1 -2.7695 2.0680 2.2261 37 1 -0.8832 -0.7244 6.0071 38 1 -1.2430 -1.8133 4.6458 39 1 0.4171 -1.2233 4.8987 40 1 0.9665 1.2599 4.1521 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381415803.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:15 Heat of formation + Delta-G solvation = 71.996879 kcal Electronic energy + Delta-G solvation = -19409.931587 eV Core-core repulsion = 16647.324870 eV Total energy + Delta-G solvation = -2762.606718 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.13383 -37.40957 -34.22205 -32.93993 -31.85004 -30.48795 -29.03339 -27.44002 -26.70844 -25.00025 -22.51758 -21.05642 -20.64096 -19.64414 -19.55382 -16.78042 -16.50323 -15.60541 -15.24528 -14.60543 -14.37566 -13.96701 -13.79720 -13.36267 -12.96146 -12.74476 -12.67351 -12.62271 -12.21954 -11.85175 -11.81125 -11.43629 -11.31056 -11.04031 -10.79684 -10.64180 -10.58503 -10.30294 -10.12166 -9.84095 -9.38272 -9.30960 -9.19617 -8.34219 -8.14684 -7.20680 -6.00175 -3.91159 1.99359 2.60896 2.92380 3.32060 3.40813 3.43644 4.49067 4.56193 4.98479 5.07241 5.10592 5.18700 5.27583 5.32833 5.42725 5.59328 5.66856 5.87070 5.91665 5.94726 5.99348 6.07880 6.13999 6.28659 6.34980 6.46485 6.57640 6.60674 6.68299 6.77576 6.89609 6.93521 7.02419 7.10281 7.26716 7.78784 7.86470 8.08818 8.50549 8.81899 9.17041 9.67535 11.13514 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.024899 B = 0.006811 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.253154 B = 4110.076274 C = 4467.273096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.147 4.147 3 C 0.194 3.806 4 H 0.022 0.978 5 C -0.493 4.493 6 H 0.079 0.921 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.856 3.144 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.255 1.255 13 N -0.666 5.666 14 C 0.085 3.915 15 H 0.033 0.967 16 C -0.138 4.138 17 C -0.041 4.041 18 C -0.229 4.229 19 C 0.050 3.950 20 N -0.303 5.303 21 N -0.378 5.378 22 C 0.103 3.897 23 C 0.058 3.942 24 H 0.042 0.958 25 H 0.052 0.948 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.261 0.739 30 H 0.325 0.675 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.177 0.823 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.127 0.841 9.812 16.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C 0.085 3.915 4 H 0.040 0.960 5 C -0.532 4.532 6 H 0.097 0.903 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.684 3.316 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.179 1.179 13 N -0.298 5.298 14 C -0.026 4.026 15 H 0.051 0.949 16 C -0.195 4.195 17 C -0.080 4.080 18 C -0.240 4.240 19 C -0.136 4.136 20 N -0.124 5.124 21 N -0.160 5.160 22 C -0.039 4.039 23 C -0.087 4.087 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.144 0.856 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.194 0.806 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -13.257 0.175 10.052 16.639 hybrid contribution -0.545 -0.333 -1.357 1.499 sum -13.803 -0.158 8.696 16.314 Atomic orbital electron populations 1.21952 0.98442 0.99815 1.00946 1.22576 0.92767 1.01778 1.01503 1.19551 0.96430 0.88007 0.87558 0.95976 1.21021 0.89282 1.40967 1.01895 0.90284 1.24900 0.94664 0.94968 0.98575 1.69965 1.11040 1.45170 1.27535 0.87342 0.82022 0.77973 0.84300 1.20633 1.21684 1.17938 1.60746 1.35645 1.23373 1.10059 1.21529 0.91964 0.94736 0.94365 0.94921 1.21777 1.00054 0.96203 1.01514 1.20104 0.98965 0.92597 0.96341 1.20153 0.94721 1.02015 1.07123 1.23730 0.97176 0.93632 0.99105 1.77283 1.03353 1.17865 1.13909 1.48386 1.08982 1.19648 1.38987 1.21820 1.02794 0.86177 0.93100 1.22442 0.96915 0.89823 0.99561 0.93862 0.92919 0.94609 0.93031 0.92225 0.92930 0.85637 0.92319 0.93883 0.92172 0.90731 0.91337 0.80563 0.91065 0.89582 0.89331 0.80753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.70 37.16 0.32 -2.58 16 2 C -0.15 -3.22 4.54 -26.73 -0.12 -3.34 16 3 C 0.19 4.50 1.43 -68.86 -0.10 4.40 16 4 H 0.02 0.54 5.43 -51.93 -0.28 0.26 16 5 C -0.49 -13.81 9.27 -34.44 -0.32 -14.13 16 6 H 0.08 2.45 8.06 -52.48 -0.42 2.02 16 7 C 0.07 2.01 5.34 -17.82 -0.10 1.92 16 8 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 9 Si 0.86 21.40 25.83 -169.99 -4.39 17.01 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.25 -6.03 5.48 56.52 0.31 -5.72 16 13 N -0.67 -13.21 5.86 -100.95 -0.59 -13.80 16 14 C 0.08 1.41 1.89 -67.71 -0.13 1.28 16 15 H 0.03 0.58 6.37 -51.93 -0.33 0.25 16 16 C -0.14 -2.26 9.31 37.16 0.35 -1.92 16 17 C -0.04 -0.55 5.34 -27.88 -0.15 -0.70 16 18 C -0.23 -3.12 3.94 -105.05 -0.41 -3.53 16 19 C 0.05 0.68 11.50 -17.36 -0.20 0.48 16 20 N -0.30 -4.43 12.58 30.62 0.39 -4.05 16 21 N -0.38 -4.86 4.01 -68.16 -0.27 -5.14 16 22 C 0.10 0.90 11.47 59.85 0.69 1.59 16 23 C 0.06 0.76 9.86 -17.22 -0.17 0.59 16 24 H 0.04 0.81 8.08 -51.93 -0.42 0.39 16 25 H 0.05 0.94 5.30 -51.93 -0.28 0.67 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 1.12 8.03 -51.93 -0.42 0.70 16 28 H 0.06 1.40 4.94 -51.93 -0.26 1.14 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.33 6.06 5.33 -39.29 -0.21 5.85 16 31 H 0.06 1.10 7.20 -51.93 -0.37 0.73 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.18 1.97 8.06 -52.49 -0.42 1.55 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.18 1.99 7.95 -52.48 -0.42 1.58 16 LS Contribution 312.72 15.07 4.71 4.71 Total: -1.00 -32.21 312.72 -6.16 -38.37 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.44 Total: 5.63 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -0.34 Total: -15.95 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.29 Total: -49.76 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.39 Total: 17.01 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.21 -6.16 -38.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381415803.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.363 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds