Wall clock time and date at job start Mon Mar 30 2020 04:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34120 * 125.98674 * 2 1 4 4 C 1.30501 * 109.25549 * 179.73443 * 3 2 1 5 5 N 1.35047 * 108.69998 * 0.02562 * 4 3 2 6 6 C 1.46503 * 126.39718 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46699 * 98.69481 * 6 5 4 8 8 H 1.08993 * 109.47204 * 54.65937 * 7 6 5 9 9 C 1.53008 * 109.46675 * 174.65867 * 7 6 5 10 10 N 1.46901 * 109.47234 * 294.65510 * 7 6 5 11 11 C 1.46898 * 111.00199 * 153.87069 * 10 7 6 12 12 H 1.08998 * 109.47071 * 34.99411 * 11 10 7 13 13 C 1.53005 * 109.46510 * 274.99816 * 11 10 7 14 14 C 1.50695 * 109.47268 * 155.00010 * 11 10 7 15 15 H 1.08000 * 120.00179 * 0.02562 * 14 11 10 16 16 C 1.37877 * 119.99694 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00414 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 119.99885 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46811 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47110 * 120.00151 * 18 16 14 21 21 H 1.48497 * 109.47094 * 240.00368 * 18 16 14 22 22 C 1.34664 * 125.98817 * 179.69251 * 2 1 3 23 23 C 1.50704 * 126.59502 * 0.22651 * 22 2 1 24 24 H 1.09006 * 109.46787 * 90.02791 * 1 2 3 25 25 H 1.08997 * 109.47188 * 210.01962 * 1 2 3 26 26 H 1.08992 * 109.47319 * 330.02406 * 1 2 3 27 27 H 1.08000 * 125.65252 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.46843 * 218.69608 * 6 5 4 29 29 H 1.09000 * 109.47073 * 338.69155 * 6 5 4 30 30 H 1.09001 * 109.46767 * 180.02562 * 9 7 6 31 31 H 1.08997 * 109.46822 * 299.99473 * 9 7 6 32 32 H 1.08993 * 109.47247 * 60.00097 * 9 7 6 33 33 H 1.00902 * 110.99956 * 29.90695 * 10 7 6 34 34 H 1.08993 * 109.47437 * 299.99903 * 13 11 10 35 35 H 1.09005 * 109.47096 * 60.00672 * 13 11 10 36 36 H 1.09001 * 109.46553 * 179.97438 * 13 11 10 37 37 H 0.96999 * 120.00075 * 179.97438 * 17 16 14 38 38 H 1.09005 * 109.47042 * 85.16043 * 23 22 2 39 39 H 1.08997 * 109.46959 * 205.15766 * 23 22 2 40 40 H 1.08995 * 109.46831 * 325.16344 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0852 0.0000 4 6 3.5449 0.7096 0.0057 5 7 3.5912 -0.6401 0.0090 6 6 4.7996 -1.4684 0.0161 7 6 5.0907 -1.9333 1.4444 8 1 4.2119 -2.4348 1.8495 9 6 6.2728 -2.9048 1.4335 10 7 5.4200 -0.7709 2.2802 11 6 5.1050 -1.0310 3.6912 12 1 5.2990 -2.0789 3.9197 13 6 3.6301 -0.7171 3.9506 14 6 5.9660 -0.1580 4.5673 15 1 6.6759 0.5223 4.1206 16 6 5.8466 -0.2270 5.9392 17 7 4.9818 -1.0551 6.4832 18 14 6.9144 0.8546 7.0252 19 1 7.7989 1.6906 6.1743 20 1 6.0490 1.7334 7.8522 21 1 7.7438 0.0000 7.9123 22 6 2.2983 -1.0896 0.0058 23 6 1.8473 -2.5275 0.0088 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 -0.8898 0.5141 26 1 -0.3633 0.8901 0.5134 27 1 4.4003 1.3688 0.0067 28 1 4.6486 -2.3368 -0.6251 29 1 5.6422 -0.8850 -0.3550 30 1 6.4799 -3.2364 2.4510 31 1 6.0284 -3.7672 0.8134 32 1 7.1516 -2.4033 1.0284 33 1 4.9469 0.0571 1.9506 34 1 3.4360 0.3308 3.7221 35 1 3.0073 -1.3486 3.3170 36 1 3.3962 -0.9104 4.9975 37 1 4.8981 -1.1039 7.4483 38 1 1.6590 -2.8514 -1.0149 39 1 2.6246 -3.1513 0.4500 40 1 0.9319 -2.6199 0.5932 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381473414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:14 Heat of formation + Delta-G solvation = 28.026223 kcal Electronic energy + Delta-G solvation = -19293.387628 eV Core-core repulsion = 16528.874199 eV Total energy + Delta-G solvation = -2764.513428 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.09406 -38.72745 -35.91326 -34.18286 -33.51525 -32.34445 -29.71360 -28.80414 -27.40624 -27.21380 -26.09834 -22.89278 -21.59752 -21.49761 -20.38540 -18.49460 -17.64489 -16.94163 -16.92903 -16.30010 -15.59964 -15.33468 -14.69502 -14.51640 -14.26289 -13.78280 -13.76250 -13.65895 -13.63203 -13.27969 -13.18990 -13.00959 -12.93914 -12.92003 -12.82143 -12.63902 -12.32998 -12.29209 -11.99506 -11.78594 -11.06396 -10.83516 -10.52303 -10.33672 -9.09414 -9.00711 -8.12994 -6.23892 1.11461 1.39680 1.41610 1.53672 1.92624 2.17893 2.41562 3.15894 3.42864 3.75565 3.80749 3.89257 4.02640 4.22011 4.25252 4.39258 4.45192 4.61557 4.65259 4.66553 4.72034 4.77320 4.89950 4.91419 4.95371 5.02339 5.09682 5.14989 5.16754 5.34920 5.41898 5.52408 5.62900 5.76271 5.93927 6.22606 6.34798 6.56386 6.74961 6.89846 7.19344 7.46060 8.93064 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.024321 B = 0.006168 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.990565 B = 4538.167847 C = 4948.298884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.037 4.037 3 N -0.529 5.529 4 C 0.173 3.827 5 N -0.451 5.451 6 C 0.107 3.893 7 C 0.067 3.933 8 H 0.023 0.977 9 C -0.127 4.127 10 N -0.677 5.677 11 C 0.224 3.776 12 H 0.006 0.994 13 C -0.142 4.142 14 C -0.513 4.513 15 H 0.055 0.945 16 C 0.008 3.992 17 N -0.924 5.924 18 Si 0.960 3.040 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.279 1.279 22 C -0.030 4.030 23 C -0.074 4.074 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.056 0.944 27 H 0.220 0.780 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.033 0.967 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.325 0.675 34 H 0.014 0.986 35 H 0.012 0.988 36 H 0.060 0.940 37 H 0.261 0.739 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.616 -4.359 -15.105 16.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.166 4.166 3 N -0.248 5.248 4 C -0.109 4.109 5 N -0.133 5.133 6 C -0.015 4.015 7 C -0.044 4.044 8 H 0.041 0.959 9 C -0.186 4.186 10 N -0.308 5.308 11 C 0.115 3.885 12 H 0.024 0.976 13 C -0.201 4.201 14 C -0.551 4.551 15 H 0.073 0.927 16 C -0.190 4.190 17 N -0.564 5.564 18 Si 0.786 3.214 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.205 1.205 22 C -0.145 4.145 23 C -0.131 4.131 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.236 0.764 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.143 0.857 34 H 0.034 0.966 35 H 0.031 0.969 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.146 -3.872 -14.888 15.702 hybrid contribution -0.201 -0.007 1.186 1.203 sum -3.348 -3.879 -13.702 14.629 Atomic orbital electron populations 1.20032 0.86565 1.02588 1.02601 1.20987 0.97597 0.88337 1.09639 1.70100 1.01650 1.31775 1.21310 1.25236 0.97214 0.82734 1.05725 1.45540 1.06776 1.07477 1.53543 1.22320 0.85219 0.96769 0.97188 1.21925 0.97197 0.93124 0.92139 0.95854 1.21664 0.97476 0.98039 1.01405 1.60900 1.62412 1.04462 1.03065 1.18860 0.90336 0.94823 0.84471 0.97649 1.22117 0.99427 0.96848 1.01721 1.21461 1.20352 1.22243 0.91093 0.92651 1.25731 0.96856 0.97008 0.99446 1.70012 1.36741 1.38507 1.11135 0.85471 0.78695 0.78691 0.78551 1.19149 1.20932 1.20510 1.21450 0.83706 0.98420 1.10911 1.20311 1.01950 0.87043 1.03826 0.90362 0.90189 0.92497 0.76362 0.86115 0.86365 0.94823 0.89832 0.91227 0.85670 0.96640 0.96875 0.92088 0.93034 0.88828 0.91686 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.47 10.22 71.24 0.73 -0.74 16 2 C -0.04 -1.17 7.09 41.39 0.29 -0.88 16 3 N -0.53 -18.59 11.25 -188.32 -2.12 -20.71 16 4 C 0.17 5.30 11.10 180.26 2.00 7.30 16 5 N -0.45 -12.47 2.50 -514.55 -1.29 -13.76 16 6 C 0.11 2.43 5.20 86.38 0.45 2.88 16 7 C 0.07 2.09 2.68 44.92 0.12 2.21 16 8 H 0.02 0.83 6.49 -2.39 -0.02 0.82 16 9 C -0.13 -3.51 9.41 71.98 0.68 -2.84 16 10 N -0.68 -27.36 6.04 -473.31 -2.86 -30.22 16 11 C 0.22 11.35 2.38 44.17 0.11 11.45 16 12 H 0.01 0.31 7.20 -2.39 -0.02 0.30 16 13 C -0.14 -7.23 8.92 71.98 0.64 -6.59 16 14 C -0.51 -28.70 8.84 25.60 0.23 -28.48 16 15 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 16 C 0.01 0.43 5.30 84.66 0.45 0.88 16 17 N -0.92 -54.01 11.32 21.45 0.24 -53.77 16 18 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 C -0.03 -0.84 6.95 40.95 0.28 -0.55 16 23 C -0.07 -1.50 9.93 71.24 0.71 -0.80 16 24 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 25 H 0.08 1.65 7.27 -2.39 -0.02 1.63 16 26 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.22 5.55 8.06 -2.91 -0.02 5.53 16 28 H 0.12 2.01 8.11 -2.39 -0.02 1.99 16 29 H 0.12 2.33 8.12 -2.39 -0.02 2.31 16 30 H 0.03 1.14 7.51 -2.39 -0.02 1.12 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.33 13.04 6.31 -89.69 -0.57 12.47 16 34 H 0.01 0.77 8.13 -2.39 -0.02 0.75 16 35 H 0.01 0.59 7.44 -2.38 -0.02 0.57 16 36 H 0.06 3.45 6.07 -2.39 -0.01 3.43 16 37 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 38 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.06 1.33 7.21 -2.39 -0.02 1.31 16 40 H 0.08 1.63 7.32 -2.39 -0.02 1.61 16 Total: -1.00 -68.18 322.06 3.13 -65.05 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.45 Total: 23.00 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 6.68 Total: -16.16 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -6.02 Total: -118.46 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -68.18 3.13 -65.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381473414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.074 kcal (2) G-P(sol) polarization free energy of solvation -68.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds