Wall clock time and date at job start Mon Mar 30 2020 04:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34127 * 125.98983 * 2 1 4 4 C 1.30502 * 109.25907 * 180.02562 * 3 2 1 5 5 N 1.35042 * 108.69556 * 359.97438 * 4 3 2 6 6 C 1.46503 * 126.39350 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.46768 * 98.82432 * 6 5 4 8 8 H 1.08995 * 109.47763 * 54.41877 * 7 6 5 9 9 C 1.53003 * 109.47206 * 174.42036 * 7 6 5 10 10 N 1.46902 * 109.47233 * 294.41299 * 7 6 5 11 11 C 1.46902 * 110.99910 * 105.05417 * 10 7 6 12 12 H 1.09001 * 109.46914 * 325.62441 * 11 10 7 13 13 C 1.52995 * 109.47143 * 85.62504 * 11 10 7 14 14 C 1.50696 * 109.47263 * 205.62800 * 11 10 7 15 15 H 1.08003 * 119.99953 * 359.97438 * 14 11 10 16 16 C 1.37880 * 120.00189 * 180.02562 * 14 11 10 17 17 N 1.31513 * 119.99732 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 120.00085 * 179.97438 * 16 14 11 19 19 H 1.48494 * 109.47247 * 89.99514 * 18 16 14 20 20 H 1.48497 * 109.46512 * 209.99632 * 18 16 14 21 21 H 1.48496 * 109.46832 * 329.99210 * 18 16 14 22 22 C 1.34666 * 125.99230 * 180.34531 * 2 1 3 23 23 C 1.50704 * 126.58982 * 359.97438 * 22 2 1 24 24 H 1.09003 * 109.46707 * 89.97992 * 1 2 3 25 25 H 1.09000 * 109.47193 * 209.97794 * 1 2 3 26 26 H 1.08999 * 109.47142 * 329.98192 * 1 2 3 27 27 H 1.07997 * 125.65214 * 180.02562 * 4 3 2 28 28 H 1.08998 * 109.47265 * 338.82346 * 6 5 4 29 29 H 1.09000 * 109.47038 * 218.82327 * 6 5 4 30 30 H 1.08999 * 109.46795 * 304.66286 * 9 7 6 31 31 H 1.09002 * 109.47265 * 64.66066 * 9 7 6 32 32 H 1.08997 * 109.47763 * 184.66214 * 9 7 6 33 33 H 1.00904 * 110.99978 * 341.10497 * 10 7 6 34 34 H 1.08997 * 109.47137 * 185.19308 * 13 11 10 35 35 H 1.09002 * 109.47113 * 305.18836 * 13 11 10 36 36 H 1.09001 * 109.47417 * 65.18615 * 13 11 10 37 37 H 0.97000 * 119.99837 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.46953 * 275.14418 * 23 22 2 39 39 H 1.08996 * 109.47392 * 35.14121 * 23 22 2 40 40 H 1.09003 * 109.47106 * 155.15058 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5450 0.7096 -0.0006 5 7 3.5913 -0.6401 -0.0004 6 6 4.7997 -1.4684 -0.0013 7 6 5.0965 -1.9389 1.4239 8 1 4.2179 -2.4383 1.8321 9 6 6.2746 -2.9149 1.4038 10 7 5.4347 -0.7805 2.2616 11 6 4.3220 -0.4350 3.1563 12 1 3.3758 -0.6338 2.6528 13 6 4.4098 -1.2796 4.4290 14 6 4.4020 1.0261 3.5164 15 1 5.1999 1.6369 3.1206 16 6 3.4572 1.5829 4.3520 17 7 2.4858 0.8390 4.8344 18 14 3.5568 3.3940 4.7990 19 1 2.7896 4.1912 3.8086 20 1 2.9832 3.6018 6.1528 21 1 4.9768 3.8283 4.7910 22 6 2.2984 -1.0896 -0.0066 23 6 1.8473 -2.5275 -0.0147 24 1 -0.3633 0.0004 -1.0277 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5141 27 1 4.4004 1.3688 -0.0003 28 1 5.6408 -0.8835 -0.3735 29 1 4.6461 -2.3343 -0.6453 30 1 6.0568 -3.7332 0.7174 31 1 7.1730 -2.3933 1.0738 32 1 6.4333 -3.3137 2.4057 33 1 5.7016 0.0102 1.6945 34 1 3.5352 -1.0907 5.0514 35 1 4.4447 -2.3359 4.1624 36 1 5.3121 -1.0139 4.9798 37 1 1.8209 1.2308 5.4220 38 1 1.6510 -2.8524 1.0071 39 1 0.9365 -2.6192 -0.6064 40 1 2.6282 -3.1508 -0.4504 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381473420.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:20 Heat of formation + Delta-G solvation = 49.325374 kcal Electronic energy + Delta-G solvation = -19791.312087 eV Core-core repulsion = 17027.722259 eV Total energy + Delta-G solvation = -2763.589828 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.61970 -37.09592 -34.01132 -32.45674 -32.13330 -30.59494 -28.46168 -27.24077 -25.99470 -25.05957 -24.71214 -20.98443 -20.23186 -19.84173 -18.96700 -16.65549 -16.11980 -15.40623 -14.96203 -14.49858 -14.08038 -13.80850 -13.14094 -13.01080 -12.83676 -12.58388 -12.37960 -12.32984 -12.02689 -11.96563 -11.79161 -11.69209 -11.53705 -11.29433 -10.86794 -10.74854 -10.57062 -10.29969 -10.11995 -9.86930 -9.27423 -8.94451 -8.76895 -8.39952 -7.54483 -7.31680 -5.94661 -3.99602 2.58155 3.28281 3.37365 3.43552 3.44948 3.77194 4.47716 4.79666 5.00340 5.11806 5.22042 5.29980 5.35250 5.40605 5.44411 5.68548 5.73586 5.80466 5.85227 5.88238 6.04891 6.09219 6.12133 6.30424 6.36563 6.48241 6.53375 6.87063 6.93138 7.14011 7.23164 7.37512 7.50805 7.79234 7.82257 7.91238 8.24360 8.36346 8.64608 8.74232 9.06789 9.66148 11.12331 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.016401 B = 0.010034 C = 0.007521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.779643 B = 2789.924727 C = 3722.233100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.002 3.998 3 N -0.486 5.486 4 C 0.205 3.795 5 N -0.449 5.449 6 C 0.082 3.918 7 C 0.067 3.933 8 H 0.071 0.929 9 C -0.132 4.132 10 N -0.679 5.679 11 C 0.217 3.783 12 H 0.007 0.993 13 C -0.122 4.122 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.069 3.931 17 N -0.887 5.887 18 Si 0.891 3.109 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.032 4.032 23 C -0.070 4.070 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.195 0.805 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.327 0.673 34 H 0.076 0.924 35 H 0.000 1.000 36 H 0.030 0.970 37 H 0.259 0.741 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.494 -7.486 -10.513 12.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.127 4.127 3 N -0.204 5.204 4 C -0.077 4.077 5 N -0.132 5.132 6 C -0.042 4.042 7 C -0.045 4.045 8 H 0.089 0.911 9 C -0.190 4.190 10 N -0.310 5.310 11 C 0.110 3.890 12 H 0.025 0.975 13 C -0.181 4.181 14 C -0.553 4.553 15 H 0.073 0.927 16 C -0.133 4.133 17 N -0.525 5.525 18 Si 0.719 3.281 19 H -0.205 1.205 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.146 4.146 23 C -0.128 4.128 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.212 0.788 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.145 0.855 34 H 0.095 0.905 35 H 0.020 0.980 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.497 -7.111 -9.899 12.280 hybrid contribution -0.121 0.655 -0.123 0.678 sum 1.376 -6.456 -10.022 12.001 Atomic orbital electron populations 1.19930 0.88610 1.02416 1.00893 1.20289 0.95903 0.88255 1.08283 1.70088 1.00490 1.30185 1.19667 1.24579 0.96941 0.81436 1.04783 1.45209 1.05770 1.07486 1.54722 1.22616 0.85745 0.95420 1.00427 1.21995 0.97882 0.94844 0.89747 0.91100 1.21724 0.97960 0.97534 1.01827 1.60886 1.41897 1.06965 1.21228 1.19126 0.86416 0.94433 0.89014 0.97494 1.21728 1.01669 0.94527 1.00167 1.21088 1.11077 0.93626 1.29477 0.92735 1.24820 0.95097 0.97642 0.95763 1.69892 1.14229 1.35275 1.33148 0.86606 0.78108 0.85737 0.77625 1.20527 1.21412 1.20053 1.20718 0.83817 0.96807 1.13238 1.20123 1.00821 0.89359 1.02484 0.92397 0.91912 0.91448 0.78808 0.89076 0.90006 0.93591 0.92629 0.91898 0.85476 0.90502 0.98049 0.95064 0.93138 0.91142 0.90802 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.98 10.13 36.01 0.36 -0.61 16 2 C 0.00 0.04 7.09 -82.85 -0.59 -0.55 16 3 N -0.49 -10.50 11.25 -10.88 -0.12 -10.62 16 4 C 0.20 3.92 12.25 -90.37 -1.11 2.81 16 5 N -0.45 -7.66 2.30 -113.99 -0.26 -7.93 16 6 C 0.08 1.13 5.11 -4.04 -0.02 1.11 16 7 C 0.07 1.09 2.69 -67.71 -0.18 0.90 16 8 H 0.07 1.32 7.24 -51.93 -0.38 0.94 16 9 C -0.13 -1.74 9.52 37.16 0.35 -1.38 16 10 N -0.68 -13.61 6.11 -100.96 -0.62 -14.22 16 11 C 0.22 5.39 2.37 -68.87 -0.16 5.22 16 12 H 0.01 0.21 7.30 -51.93 -0.38 -0.17 16 13 C -0.12 -3.08 9.13 37.16 0.34 -2.74 16 14 C -0.51 -14.09 8.59 -34.44 -0.30 -14.38 16 15 H 0.05 1.48 7.61 -52.48 -0.40 1.08 16 16 C 0.07 1.95 5.30 -17.82 -0.09 1.86 16 17 N -0.89 -26.04 11.38 55.43 0.63 -25.41 16 18 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 19 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.03 -0.56 6.95 -81.60 -0.57 -1.13 16 23 C -0.07 -0.95 9.78 36.01 0.35 -0.59 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.91 7.90 -51.93 -0.41 0.50 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.20 3.26 8.06 -52.49 -0.42 2.83 16 28 H 0.09 1.10 8.02 -51.93 -0.42 0.68 16 29 H 0.08 0.94 7.43 -51.93 -0.39 0.55 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.33 6.42 7.30 -39.29 -0.29 6.14 16 34 H 0.08 2.12 6.23 -51.93 -0.32 1.80 16 35 H 0.00 0.01 7.82 -51.93 -0.41 -0.40 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.85 8.04 -51.93 -0.42 0.43 16 40 H 0.06 0.67 7.30 -51.93 -0.38 0.29 16 LS Contribution 326.35 15.07 4.92 4.92 Total: -1.00 -31.97 326.35 -8.78 -40.75 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.70 Total: 4.82 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.61 Total: -9.48 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.37 Total: -58.18 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.97 -8.78 -40.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381473420.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.076 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds