Wall clock time and date at job start Mon Mar 30 2020 04:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 N 1.46498 * 109.46994 * 185.00094 * 4 2 1 6 6 C 1.36885 * 126.39725 * 269.70948 * 5 4 2 7 7 C 1.34664 * 106.81693 * 179.84500 * 6 5 4 8 8 N 1.34120 * 108.02171 * 0.42367 * 7 6 5 9 9 C 1.30500 * 109.25609 * 359.72895 * 8 7 6 10 10 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 11 11 C 1.46899 * 111.00029 * 85.00270 * 10 2 1 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 2 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47212 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00129 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99861 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00346 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99914 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46821 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47152 * 119.99687 * 19 17 15 22 22 H 1.48494 * 109.47204 * 239.99634 * 19 17 15 23 23 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 24 24 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 26 26 H 1.08995 * 109.46658 * 304.99898 * 4 2 1 27 27 H 1.09003 * 109.46922 * 64.99638 * 4 2 1 28 28 H 1.08003 * 126.58811 * 359.97438 * 6 5 4 29 29 H 1.08002 * 125.98422 * 180.11849 * 7 6 5 30 30 H 1.08002 * 125.64841 * 180.02562 * 9 8 7 31 31 H 1.00908 * 110.99583 * 208.95182 * 10 2 1 32 32 H 1.09002 * 109.47043 * 299.99792 * 11 10 2 33 33 H 1.09001 * 109.47354 * 59.99854 * 11 10 2 34 34 H 1.09002 * 109.47153 * 300.00004 * 12 11 10 35 35 H 1.08998 * 109.47533 * 59.99633 * 12 11 10 36 36 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 37 37 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 38 38 H 1.09002 * 109.47153 * 300.00216 * 14 13 12 39 39 H 1.09001 * 109.47289 * 60.00300 * 14 13 12 40 40 H 0.96993 * 120.00442 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.6180 1.3109 6 6 4.4001 -1.4981 0.7732 7 6 5.6275 -1.0227 1.0579 8 7 5.4809 0.1115 1.7585 9 6 4.2093 0.3602 1.9138 10 7 2.0196 -0.6925 -1.1995 11 6 2.0824 0.2227 -2.3469 12 6 2.5961 -0.5327 -3.5742 13 6 2.6610 0.4203 -4.7694 14 6 3.1753 -0.3350 -5.9966 15 6 3.2397 0.6039 -7.1737 16 1 2.9431 1.6359 -7.0581 17 6 3.6764 0.1450 -8.3983 18 7 4.0372 -1.1117 -8.5392 19 14 3.7556 1.3086 -9.8576 20 1 3.2983 2.6583 -9.4398 21 1 5.1541 1.3899 -10.3505 22 1 2.8770 0.8026 -10.9425 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.6054 -0.2619 2.1369 27 1 1.7516 -1.7717 1.2054 28 1 4.1700 -2.3992 0.2242 29 1 6.5654 -1.4780 0.7760 30 1 3.7931 1.2081 2.4375 31 1 2.9173 -1.1205 -1.0288 32 1 1.0870 0.6165 -2.5525 33 1 2.7588 1.0463 -2.1182 34 1 3.5916 -0.9261 -3.3684 35 1 1.9201 -1.3565 -3.8032 36 1 1.6653 0.8133 -4.9751 37 1 3.3369 1.2443 -4.5408 38 1 4.1710 -0.7277 -5.7906 39 1 2.4998 -1.1592 -6.2255 40 1 4.3447 -1.4345 -9.4006 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385339108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:43 Heat of formation + Delta-G solvation = 18.847342 kcal Electronic energy + Delta-G solvation = -17928.861661 eV Core-core repulsion = 15163.950207 eV Total energy + Delta-G solvation = -2764.911454 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.99772 -38.77098 -36.62181 -34.97610 -33.74953 -31.88964 -30.37818 -29.26092 -27.43508 -26.08433 -23.20312 -22.47429 -22.03083 -21.92512 -21.27196 -18.48932 -18.29128 -17.39347 -16.64897 -16.38294 -16.28874 -15.43996 -15.20667 -14.92864 -14.69538 -14.37957 -14.18790 -13.98235 -13.65447 -13.46110 -13.10346 -12.92347 -12.85315 -12.69178 -12.46489 -12.23035 -12.17034 -11.95593 -11.42330 -11.33189 -11.03179 -10.95494 -10.57511 -10.53986 -9.59486 -9.39160 -8.21423 -6.33056 1.12300 1.38671 1.39147 1.52635 1.89116 2.21625 2.39749 3.03756 3.11351 3.69162 3.87148 3.89551 3.97164 4.06791 4.12024 4.25336 4.41328 4.48660 4.57022 4.59390 4.66558 4.72511 4.79325 4.87719 4.94382 5.01521 5.17849 5.23478 5.29877 5.32615 5.39444 5.52138 5.74421 5.79826 5.84396 5.98102 6.23622 6.27989 6.31732 6.84297 7.13386 7.36431 8.90711 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.027409 B = 0.003565 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.330031 B = 7852.733570 C = 8439.330597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.066 3.934 3 H 0.042 0.958 4 C 0.103 3.897 5 N -0.458 5.458 6 C -0.055 4.055 7 C -0.058 4.058 8 N -0.540 5.540 9 C 0.176 3.824 10 N -0.690 5.690 11 C 0.074 3.926 12 C -0.104 4.104 13 C -0.097 4.097 14 C 0.023 3.977 15 C -0.546 4.546 16 H 0.059 0.941 17 C -0.002 4.002 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.276 1.276 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.133 0.867 27 H 0.112 0.888 28 H 0.193 0.807 29 H 0.173 0.827 30 H 0.231 0.769 31 H 0.338 0.662 32 H 0.076 0.924 33 H 0.020 0.980 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.045 0.955 38 H -0.012 1.012 39 H -0.008 1.008 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.004 0.940 23.117 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.044 4.044 3 H 0.060 0.940 4 C -0.019 4.019 5 N -0.140 5.140 6 C -0.188 4.188 7 C -0.205 4.205 8 N -0.259 5.259 9 C -0.106 4.106 10 N -0.323 5.323 11 C -0.055 4.055 12 C -0.142 4.142 13 C -0.135 4.135 14 C -0.014 4.014 15 C -0.584 4.584 16 H 0.077 0.923 17 C -0.199 4.199 18 N -0.574 5.574 19 Si 0.791 3.209 20 H -0.186 1.186 21 H -0.203 1.203 22 H -0.202 1.202 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.102 0.898 26 H 0.151 0.849 27 H 0.130 0.870 28 H 0.210 0.790 29 H 0.190 0.810 30 H 0.248 0.752 31 H 0.158 0.842 32 H 0.094 0.906 33 H 0.038 0.962 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.006 0.994 39 H 0.010 0.990 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.082 1.042 23.138 24.220 hybrid contribution 0.622 0.251 -1.298 1.461 sum -6.460 1.293 21.840 22.812 Atomic orbital electron populations 1.21726 0.91878 1.03141 1.02531 1.22020 0.97661 0.95912 0.88825 0.93967 1.22411 0.74922 1.04789 0.99769 1.45791 1.08247 1.19407 1.40588 1.23097 0.89621 0.99744 1.06381 1.22617 0.98576 0.95482 1.03863 1.70241 1.18398 1.17335 1.19887 1.25573 0.86885 0.96483 1.01676 1.60707 1.33620 1.33386 1.04561 1.21845 1.00389 0.93231 0.90043 1.21445 1.00345 0.98505 0.93916 1.21390 1.00010 0.97750 0.94332 1.19020 0.94363 0.94983 0.93047 1.21762 1.43668 0.97060 0.95862 0.92296 1.26015 0.94798 0.96887 1.02246 1.70103 1.45426 1.16452 1.25423 0.85382 0.77943 0.79085 0.78537 1.18601 1.20309 1.20150 0.93267 0.91433 0.89758 0.84904 0.87010 0.78960 0.80969 0.75247 0.84205 0.90552 0.96218 0.93419 0.92126 0.92852 0.93659 0.99361 0.98993 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.41 71.98 0.68 -0.97 16 2 C 0.07 0.99 2.88 44.91 0.13 1.12 16 3 H 0.04 0.72 7.80 -2.39 -0.02 0.71 16 4 C 0.10 1.05 5.70 86.38 0.49 1.54 16 5 N -0.46 -7.43 2.61 -529.07 -1.38 -8.81 16 6 C -0.06 -1.05 9.77 83.08 0.81 -0.24 16 7 C -0.06 -1.38 11.87 83.52 0.99 -0.39 16 8 N -0.54 -14.05 11.25 -200.32 -2.25 -16.30 16 9 C 0.18 3.32 12.56 180.26 2.26 5.59 16 10 N -0.69 -14.94 6.31 -491.57 -3.10 -18.04 16 11 C 0.07 2.01 5.48 86.30 0.47 2.48 16 12 C -0.10 -3.58 5.47 30.59 0.17 -3.42 16 13 C -0.10 -4.09 5.15 30.59 0.16 -3.93 16 14 C 0.02 1.26 4.97 29.85 0.15 1.40 16 15 C -0.55 -32.04 9.11 25.60 0.23 -31.81 16 16 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 17 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 18 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16 19 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 20 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H 0.05 0.77 7.45 -2.38 -0.02 0.75 16 24 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.19 2.86 7.87 -2.91 -0.02 2.84 16 29 H 0.17 3.61 8.06 -2.91 -0.02 3.58 16 30 H 0.23 2.53 8.06 -2.91 -0.02 2.50 16 31 H 0.34 7.49 6.03 -89.69 -0.54 6.95 16 32 H 0.08 2.00 7.44 -2.39 -0.02 1.98 16 33 H 0.02 0.56 8.06 -2.39 -0.02 0.54 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 38 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 39 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -72.54 330.39 3.03 -69.51 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.45 Total: 12.59 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: 7.01 Total: -28.27 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -6.45 Total: -100.91 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -72.54 3.03 -69.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385339108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.359 kcal (2) G-P(sol) polarization free energy of solvation -72.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds