Wall clock time and date at job start Mon Mar 30 2020 04:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47166 * 277.44173 * 3 2 1 5 5 C 1.53000 * 109.47417 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47345 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47037 * 180.02562 * 6 5 4 8 8 N 1.46900 * 109.47355 * 180.02562 * 7 6 5 9 9 C 1.46891 * 111.00538 * 169.99723 * 8 7 6 10 10 C 1.53236 * 109.34490 * 187.25409 * 9 8 7 11 11 N 1.47086 * 108.51747 * 306.17144 * 10 9 8 12 12 C 1.36936 * 120.87786 * 231.18160 * 11 10 9 13 13 H 1.07993 * 120.00304 * 27.13527 * 12 11 10 14 14 C 1.38809 * 119.99955 * 206.85385 * 12 11 10 15 15 N 1.31624 * 119.99882 * 17.16531 * 14 12 11 16 16 Si 1.86805 * 120.00166 * 197.16921 * 14 12 11 17 17 H 1.48494 * 109.47060 * 59.99902 * 16 14 12 18 18 H 1.48503 * 109.46870 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46852 * 299.99893 * 16 14 12 20 20 C 1.47083 * 118.23837 * 51.45711 * 11 10 9 21 21 C 1.46900 * 110.99950 * 294.30335 * 8 7 6 22 22 H 1.08998 * 109.47311 * 157.44206 * 3 2 1 23 23 H 1.08995 * 109.47274 * 37.44241 * 3 2 1 24 24 H 1.09006 * 109.47292 * 59.99918 * 4 3 2 25 25 H 1.09005 * 109.47195 * 300.00049 * 4 3 2 26 26 H 1.09010 * 109.46883 * 60.00207 * 5 4 3 27 27 H 1.08995 * 109.47140 * 300.00139 * 5 4 3 28 28 H 1.08998 * 109.46584 * 60.00775 * 6 5 4 29 29 H 1.08995 * 109.47385 * 300.00319 * 6 5 4 30 30 H 1.08998 * 109.47526 * 60.00266 * 7 6 5 31 31 H 1.09005 * 109.46946 * 300.00303 * 7 6 5 32 32 H 1.09002 * 109.49046 * 67.29429 * 9 8 7 33 33 H 1.08998 * 109.52013 * 307.22889 * 9 8 7 34 34 H 1.08998 * 109.63090 * 186.46185 * 10 9 8 35 35 H 1.09001 * 109.62654 * 65.87812 * 10 9 8 36 36 H 0.97001 * 119.99713 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.62320 * 68.25155 * 20 11 10 38 38 H 1.08997 * 109.62861 * 188.82856 * 20 11 10 39 39 H 1.09000 * 109.49232 * 292.70484 * 21 8 7 40 40 H 1.08999 * 109.49067 * 52.78237 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.1859 1.4303 5 6 4.6481 -0.1846 1.4305 6 6 5.1581 -0.3706 2.8609 7 6 6.6881 -0.3686 2.8610 8 7 7.1779 -0.5478 4.2343 9 6 8.6270 -0.7881 4.2494 10 6 9.0671 -1.1481 5.6724 11 7 8.6020 -0.0934 6.5861 12 6 9.4649 0.5068 7.4637 13 1 10.5185 0.5616 7.2329 14 6 8.9846 1.0501 8.6473 15 7 7.7945 0.7076 9.0933 16 14 10.0270 2.2674 9.6071 17 1 10.3121 3.4520 8.7583 18 1 9.2923 2.6963 10.8243 19 1 11.3048 1.6218 10.0013 20 6 7.1843 0.2950 6.5363 21 6 6.8197 0.6022 5.0753 22 1 2.9709 0.9498 -0.3942 23 1 2.9717 -0.8151 -0.6247 24 1 2.7551 -1.1352 1.8246 25 1 2.7544 0.6299 2.0551 26 1 5.0106 0.7649 1.0364 27 1 5.0121 -1.0001 0.8056 28 1 4.7957 -1.3199 3.2552 29 1 4.7941 0.4451 3.4854 30 1 7.0503 0.5808 2.4668 31 1 7.0525 -1.1842 2.2364 32 1 9.1483 0.1123 3.9243 33 1 8.8668 -1.6106 3.5755 34 1 10.1542 -1.2150 5.7136 35 1 8.6274 -2.1028 5.9611 36 1 7.4587 1.0875 9.9203 37 1 6.5672 -0.5237 6.9066 38 1 7.0261 1.1825 7.1490 39 1 7.3662 1.4832 4.7386 40 1 5.7483 0.7878 5.0004 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385376554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:50 Heat of formation + Delta-G solvation = 16.089400 kcal Electronic energy + Delta-G solvation = -18050.822198 eV Core-core repulsion = 15285.791150 eV Total energy + Delta-G solvation = -2765.031048 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.74174 -38.08499 -36.88075 -35.59164 -33.49829 -31.81594 -31.57153 -28.72049 -26.63527 -24.70523 -24.21716 -22.50469 -21.59621 -20.77917 -18.69741 -18.24386 -17.00901 -16.74475 -16.21406 -15.88395 -15.44668 -15.29661 -15.21975 -14.96413 -14.76538 -14.46456 -13.94317 -13.70032 -13.36521 -13.12676 -12.94754 -12.70027 -12.60857 -12.56484 -12.34472 -12.04600 -11.99613 -11.84390 -11.72268 -11.65147 -11.43666 -11.29858 -11.05160 -10.57070 -9.17575 -8.66193 -7.86846 -5.31903 1.46793 1.49261 1.56310 1.84262 1.89192 2.51410 3.05025 3.21980 3.28697 3.71293 4.05055 4.15700 4.24717 4.35923 4.37916 4.41260 4.58911 4.61716 4.70991 4.75341 4.79901 4.85355 4.89430 4.98508 5.02630 5.07863 5.13445 5.21818 5.26540 5.38208 5.41192 5.58263 5.61649 5.66264 5.69899 6.26469 6.39064 6.42219 6.68733 7.13924 7.85192 8.39540 9.19588 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.037098 B = 0.003477 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.567636 B = 8051.188641 C = 8536.385851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C 0.235 3.765 3 C -0.020 4.020 4 C -0.114 4.114 5 C -0.105 4.105 6 C -0.116 4.116 7 C 0.056 3.944 8 N -0.547 5.547 9 C 0.056 3.944 10 C 0.141 3.859 11 N -0.616 5.616 12 C -0.265 4.265 13 H 0.067 0.933 14 C -0.053 4.053 15 N -0.936 5.936 16 Si 0.970 3.030 17 H -0.278 1.278 18 H -0.294 1.294 19 H -0.274 1.274 20 C 0.185 3.815 21 C 0.052 3.948 22 H 0.135 0.865 23 H 0.139 0.861 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.029 0.971 31 H 0.087 0.913 32 H 0.021 0.979 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.014 0.986 36 H 0.250 0.750 37 H -0.004 1.004 38 H 0.054 0.946 39 H 0.015 0.985 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.464 -1.357 -19.160 19.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C -0.081 4.081 3 C -0.060 4.060 4 C -0.153 4.153 5 C -0.143 4.143 6 C -0.154 4.154 7 C -0.071 4.071 8 N -0.272 5.272 9 C -0.073 4.073 10 C 0.016 3.984 11 N -0.340 5.340 12 C -0.395 4.395 13 H 0.085 0.915 14 C -0.248 4.248 15 N -0.583 5.583 16 Si 0.797 3.203 17 H -0.204 1.204 18 H -0.220 1.220 19 H -0.200 1.200 20 C 0.059 3.941 21 C -0.077 4.077 22 H 0.153 0.847 23 H 0.157 0.843 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.106 0.894 32 H 0.040 0.960 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.032 0.968 36 H 0.059 0.941 37 H 0.014 0.986 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.447 -1.727 -18.827 19.675 hybrid contribution 1.028 1.244 0.945 1.870 sum -4.419 -0.483 -17.882 18.426 Atomic orbital electron populations 1.81266 1.15683 1.11691 1.10984 1.30147 0.96177 0.90822 0.90997 1.19653 0.78202 1.08267 0.99852 1.21498 0.96221 1.02789 0.94833 1.21458 0.93674 1.03795 0.95411 1.21587 0.93769 1.01883 0.98151 1.22222 0.96296 1.00402 0.88225 1.61911 1.13894 1.40064 1.11364 1.22437 0.87502 0.99846 0.97537 1.21162 0.97339 0.90362 0.89547 1.44448 1.06590 1.41238 1.41749 1.19510 0.91484 1.30945 0.97600 0.91484 1.25826 0.98652 1.03048 0.97314 1.70194 1.20570 1.45382 1.22114 0.85308 0.78126 0.79329 0.77488 1.20418 1.21974 1.20016 1.20718 0.83699 0.97443 0.92275 1.22639 0.99788 0.90715 0.94553 0.84678 0.84343 0.91634 0.92110 0.90405 0.89536 0.92110 0.93190 0.95227 0.89450 0.96042 0.88597 0.92234 0.96783 0.94077 0.98609 0.92769 0.96637 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -12.41 18.54 20.01 0.37 -12.04 16 2 C 0.23 3.57 15.43 89.44 1.38 4.95 16 3 C -0.02 -0.10 5.70 28.79 0.16 0.07 16 4 C -0.11 -1.04 5.17 30.59 0.16 -0.88 16 5 C -0.11 -1.01 5.21 30.59 0.16 -0.85 16 6 C -0.12 -2.16 5.15 30.59 0.16 -2.00 16 7 C 0.06 1.26 4.96 86.30 0.43 1.69 16 8 N -0.55 -18.01 4.63 -894.35 -4.14 -22.15 16 9 C 0.06 1.87 5.62 86.38 0.49 2.36 16 10 C 0.14 6.01 6.69 86.35 0.58 6.58 16 11 N -0.62 -32.02 3.03 -697.25 -2.11 -34.13 16 12 C -0.27 -14.90 9.63 84.03 0.81 -14.09 16 13 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 14 C -0.05 -3.02 4.93 84.86 0.42 -2.60 16 15 N -0.94 -56.40 11.16 21.65 0.24 -56.16 16 16 Si 0.97 45.21 29.59 68.60 2.03 47.24 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 C 0.18 9.23 5.45 86.50 0.47 9.70 16 21 C 0.05 2.00 5.48 86.54 0.47 2.48 16 22 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 23 H 0.14 -0.03 8.14 -2.39 -0.02 -0.05 16 24 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.08 6.40 -2.39 -0.02 1.06 16 30 H 0.03 0.66 8.12 -2.39 -0.02 0.64 16 31 H 0.09 1.64 7.97 -2.38 -0.02 1.62 16 32 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.10 2.55 7.99 -2.39 -0.02 2.53 16 34 H 0.06 2.41 7.95 -2.39 -0.02 2.39 16 35 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.25 14.58 8.31 -92.71 -0.77 13.80 16 37 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.05 3.03 6.12 -2.39 -0.01 3.02 16 39 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.08 2.78 6.16 -2.39 -0.01 2.77 16 Total: -1.00 -72.53 324.16 3.07 -69.46 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: 0.99 Total: 0.36 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 5.68 Total: 7.41 kcal Atomic # 7 Polarization: -118.83 SS G_CDS: -5.64 Total: -124.47 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -72.53 3.07 -69.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385376554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.549 kcal (2) G-P(sol) polarization free energy of solvation -72.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds