Wall clock time and date at job start Mon Mar 30 2020 04:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 C 1.50698 * 109.47265 * 185.00055 * 4 2 1 6 6 C 1.39872 * 126.03760 * 269.68970 * 5 4 2 7 7 N 1.30840 * 108.20014 * 179.81602 * 6 5 4 8 8 N 1.40084 * 108.20406 * 0.43866 * 7 6 5 9 9 C 1.46497 * 126.03531 * 179.69766 * 8 7 6 10 10 C 1.34951 * 107.92715 * 359.71902 * 8 7 6 11 11 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 12 12 C 1.46899 * 111.00029 * 85.00270 * 11 2 1 13 13 C 1.52997 * 109.47254 * 179.97438 * 12 11 2 14 14 C 1.52992 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47592 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00057 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00356 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99989 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00117 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46778 * 60.00380 * 19 17 15 21 21 H 1.48503 * 109.47134 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47402 * 300.00322 * 19 17 15 23 23 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 25 25 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 26 26 H 1.08995 * 109.46658 * 304.99898 * 4 2 1 27 27 H 1.09003 * 109.46922 * 64.99638 * 4 2 1 28 28 H 1.07994 * 125.89834 * 359.97438 * 6 5 4 29 29 H 1.08998 * 109.47060 * 270.02247 * 9 8 7 30 30 H 1.08996 * 109.47577 * 30.02306 * 9 8 7 31 31 H 1.08998 * 109.47278 * 150.02657 * 9 8 7 32 32 H 1.07994 * 126.12417 * 180.02562 * 10 8 7 33 33 H 1.00908 * 110.99583 * 208.95182 * 11 2 1 34 34 H 1.09002 * 109.47043 * 299.99792 * 12 11 2 35 35 H 1.09001 * 109.47354 * 59.99854 * 12 11 2 36 36 H 1.09002 * 109.47153 * 300.00004 * 13 12 11 37 37 H 1.08998 * 109.47533 * 59.99633 * 13 12 11 38 38 H 1.09002 * 109.47103 * 300.00247 * 14 13 12 39 39 H 1.09001 * 109.47066 * 60.00169 * 14 13 12 40 40 H 0.96996 * 119.99885 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6151 1.3127 6 6 4.4549 -1.5195 0.7607 7 7 5.6633 -1.0885 1.0176 8 7 5.5571 0.1003 1.7511 9 6 6.6731 0.9085 2.2486 10 6 4.2454 0.3692 1.9188 11 7 2.0196 -0.6925 -1.1995 12 6 2.0824 0.2227 -2.3469 13 6 2.5961 -0.5327 -3.5742 14 6 2.6610 0.4203 -4.7694 15 6 3.1676 -0.3236 -5.9782 16 1 3.4178 -1.3714 -5.9017 17 6 3.3106 0.3332 -7.1820 18 7 3.0053 1.6091 -7.2753 19 14 3.9392 -0.5887 -8.6801 20 1 3.0196 -1.7124 -8.9916 21 1 4.0020 0.3363 -9.8402 22 1 5.2961 -1.1227 -8.3994 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6054 -0.2619 2.1369 27 1 1.7516 -1.7717 1.2054 28 1 4.2056 -2.4170 0.2143 29 1 6.9510 0.5692 3.2464 30 1 7.5259 0.8024 1.5781 31 1 6.3727 1.9554 2.2915 32 1 3.8313 1.2180 2.4425 33 1 2.9173 -1.1205 -1.0288 34 1 1.0870 0.6165 -2.5525 35 1 2.7588 1.0463 -2.1182 36 1 3.5916 -0.9261 -3.3684 37 1 1.9201 -1.3565 -3.8032 38 1 1.6653 0.8133 -4.9751 39 1 3.3369 1.2443 -4.5408 40 1 3.1063 2.0712 -8.1221 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390442526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:09 Heat of formation + Delta-G solvation = 54.542491 kcal Electronic energy + Delta-G solvation = -18058.778543 eV Core-core repulsion = 15295.414946 eV Total energy + Delta-G solvation = -2763.363597 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.31712 -37.34891 -34.31120 -33.28817 -32.27357 -30.71905 -29.30833 -27.82903 -25.87930 -25.21384 -22.46984 -21.32229 -20.68886 -20.21000 -19.60027 -16.93945 -16.24049 -15.83397 -15.42747 -14.86082 -14.56774 -14.34582 -14.08360 -13.77608 -13.23093 -12.90709 -12.85916 -12.47129 -12.27682 -12.10725 -11.89209 -11.65682 -11.33241 -11.23368 -10.89650 -10.65409 -10.53771 -10.47373 -10.37570 -9.59657 -9.51253 -9.25125 -8.99249 -8.42456 -8.27871 -8.00870 -5.93386 -3.95093 1.78427 2.42021 2.71865 3.38345 3.41805 3.45141 4.36784 4.47967 4.56946 4.70343 4.89725 4.98042 5.09623 5.14632 5.17123 5.36068 5.42250 5.56151 5.62043 5.78676 5.87661 5.91125 5.96989 6.05540 6.09459 6.22408 6.40205 6.49633 6.58110 6.83091 6.88104 6.91630 7.23576 7.52871 7.61141 7.75570 7.82278 7.92672 8.07658 8.51448 9.11973 9.68435 11.18149 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.020941 B = 0.004244 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.794322 B = 6596.564801 C = 7413.200808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 H 0.038 0.962 4 C -0.042 4.042 5 C -0.237 4.237 6 C 0.052 3.948 7 N -0.294 5.294 8 N -0.379 5.379 9 C 0.102 3.898 10 C 0.053 3.947 11 N -0.685 5.685 12 C 0.061 3.939 13 C -0.107 4.107 14 C 0.023 3.977 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.185 0.815 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.171 0.829 33 H 0.338 0.662 34 H 0.065 0.935 35 H 0.019 0.981 36 H 0.043 0.957 37 H 0.056 0.944 38 H 0.016 0.984 39 H 0.012 0.988 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.972 -1.057 22.356 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 H 0.056 0.944 4 C -0.081 4.081 5 C -0.248 4.248 6 C -0.134 4.134 7 N -0.115 5.115 8 N -0.161 5.161 9 C -0.039 4.039 10 C -0.093 4.093 11 N -0.318 5.318 12 C -0.068 4.068 13 C -0.145 4.145 14 C -0.015 4.015 15 C -0.556 4.556 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.202 0.798 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.188 0.812 33 H 0.157 0.843 34 H 0.084 0.916 35 H 0.037 0.963 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.030 0.970 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.745 -1.266 21.987 22.092 hybrid contribution 0.354 0.446 -0.593 0.822 sum 2.100 -0.820 21.394 21.512 Atomic orbital electron populations 1.21790 0.94806 1.02184 1.00953 1.21512 0.95361 0.95802 0.89786 0.94439 1.20113 0.88722 1.01897 0.97392 1.20155 0.96962 0.98413 1.09281 1.23891 0.89552 1.00255 0.99688 1.77391 1.22639 0.97523 1.13995 1.48458 1.05345 1.19620 1.42652 1.21830 0.88303 0.93795 0.99993 1.22309 0.84124 1.00724 1.02140 1.60692 1.33388 1.33660 1.04098 1.22119 1.00124 0.93693 0.90834 1.21610 0.99198 0.99439 0.94216 1.19054 0.97002 0.94222 0.91225 1.21240 1.43362 0.96403 0.94576 0.92723 1.25027 0.95683 0.94882 0.98921 1.69963 1.49041 1.09024 1.25723 0.86661 0.79453 0.79617 0.82293 1.20197 1.21342 1.20292 0.92059 0.93143 0.92594 0.91094 0.90290 0.79810 0.90917 0.89239 0.89587 0.81223 0.84295 0.91628 0.96267 0.93849 0.92569 0.96610 0.96978 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.41 37.16 0.35 -1.27 16 2 C 0.09 1.08 2.64 -67.71 -0.18 0.90 16 3 H 0.04 0.51 7.80 -51.93 -0.40 0.11 16 4 C -0.04 -0.44 5.30 -27.88 -0.15 -0.59 16 5 C -0.24 -2.73 4.91 -105.05 -0.52 -3.24 16 6 C 0.05 0.67 10.44 -17.36 -0.18 0.49 16 7 N -0.29 -4.15 12.58 30.62 0.39 -3.77 16 8 N -0.38 -4.32 4.01 -68.17 -0.27 -4.60 16 9 C 0.10 0.73 11.47 59.85 0.69 1.41 16 10 C 0.05 0.55 11.40 -17.22 -0.20 0.36 16 11 N -0.69 -10.64 6.31 -106.72 -0.67 -11.31 16 12 C 0.06 1.14 5.48 -3.83 -0.02 1.12 16 13 C -0.11 -2.35 5.41 -26.74 -0.14 -2.50 16 14 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 15 C -0.52 -15.26 9.11 -34.44 -0.31 -15.57 16 16 H 0.05 1.57 7.74 -52.48 -0.41 1.16 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -27.77 13.29 55.43 0.74 -27.03 16 19 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.72 7.45 -51.92 -0.39 0.34 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.19 2.04 7.90 -52.49 -0.41 1.63 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.34 5.16 6.01 -39.29 -0.24 4.92 16 34 H 0.07 1.23 7.44 -51.93 -0.39 0.85 16 35 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 36 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 331.37 15.07 4.99 4.99 Total: -1.00 -33.78 331.37 -7.61 -41.40 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.86 Total: -0.10 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -0.90 Total: -16.86 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.17 Total: -46.70 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.78 -7.61 -41.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390442526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.938 kcal (2) G-P(sol) polarization free energy of solvation -33.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds