Wall clock time and date at job start Mon Mar 30 2020 04:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35321 * 126.12430 * 2 1 4 4 C 1.39870 * 107.91605 * 180.14256 * 3 2 1 5 5 C 1.50696 * 125.89638 * 179.86015 * 4 3 2 6 6 C 1.53007 * 109.47264 * 124.71495 * 5 4 3 7 7 H 1.08998 * 109.46688 * 54.99631 * 6 5 4 8 8 C 1.53000 * 109.47154 * 174.99953 * 6 5 4 9 9 N 1.46904 * 109.46945 * 295.00053 * 6 5 4 10 10 C 1.46895 * 110.99840 * 152.75570 * 9 6 5 11 11 H 1.09007 * 109.47249 * 335.74991 * 10 9 6 12 12 C 1.53002 * 109.46912 * 95.74951 * 10 9 6 13 13 C 1.53005 * 109.47048 * 215.75028 * 10 9 6 14 14 C 1.50695 * 109.46900 * 65.00399 * 13 10 9 15 15 H 1.07997 * 120.00392 * 359.97438 * 14 13 10 16 16 C 1.37877 * 119.99708 * 179.97438 * 14 13 10 17 17 N 1.31517 * 120.00260 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 120.00164 * 0.02562 * 16 14 13 19 19 H 1.48491 * 109.47289 * 89.99639 * 18 16 14 20 20 H 1.48502 * 109.46769 * 209.99902 * 18 16 14 21 21 H 1.48506 * 109.46516 * 329.99587 * 18 16 14 22 22 N 1.30834 * 108.20765 * 359.59763 * 4 3 2 23 23 N 1.34949 * 126.12932 * 179.69662 * 2 1 3 24 24 H 0.97003 * 126.03335 * 0.02562 * 23 2 1 25 25 H 1.08991 * 109.47368 * 270.27335 * 1 2 3 26 26 H 1.09006 * 109.46926 * 30.27532 * 1 2 3 27 27 H 1.09001 * 109.46930 * 150.27130 * 1 2 3 28 28 H 1.07993 * 126.04459 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47402 * 4.71730 * 5 4 3 30 30 H 1.08998 * 109.47615 * 244.71130 * 5 4 3 31 31 H 1.09002 * 109.47036 * 187.57627 * 8 6 5 32 32 H 1.08994 * 109.46984 * 307.57970 * 8 6 5 33 33 H 1.08998 * 109.47035 * 67.58015 * 8 6 5 34 34 H 1.00907 * 110.99806 * 28.80345 * 9 6 5 35 35 H 1.09008 * 109.46811 * 173.29774 * 12 10 9 36 36 H 1.08997 * 109.47018 * 293.29178 * 12 10 9 37 37 H 1.09003 * 109.46884 * 53.30023 * 12 10 9 38 38 H 1.09005 * 109.46660 * 185.00231 * 13 10 9 39 39 H 1.09000 * 109.46969 * 304.99833 * 13 10 9 40 40 H 0.96994 * 120.00581 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6560 -0.0033 5 6 4.8542 1.5395 -0.0074 6 6 5.7524 1.1741 1.1762 7 1 5.9858 0.1100 1.1401 8 6 7.0486 1.9835 1.1017 9 7 5.0553 1.4802 2.4325 10 6 5.5259 0.6125 3.5204 11 1 5.9355 -0.3065 3.1010 12 6 6.6119 1.3376 4.3177 13 6 4.3549 0.2734 4.4451 14 6 3.3407 -0.5473 3.6909 15 1 3.5137 -0.8013 2.6556 16 6 2.1919 -0.9740 4.3227 17 7 1.3065 -1.6898 3.6644 18 14 1.8922 -0.5341 6.1133 19 1 1.1590 0.7549 6.1903 20 1 1.0855 -1.6018 6.7569 21 1 3.1942 -0.4057 6.8159 22 7 3.6335 -0.6523 0.0035 23 7 2.3027 -1.0900 0.0058 24 1 2.0056 -2.0133 0.0103 25 1 -0.3633 0.0049 1.0276 26 1 -0.3633 0.8876 -0.5181 27 1 -0.3633 -0.8924 -0.5096 28 1 1.9741 2.1211 0.0004 29 1 4.5483 2.5823 0.0770 30 1 5.4034 1.3962 -0.9380 31 1 7.7427 1.6288 1.8637 32 1 7.4974 1.8609 0.1161 33 1 6.8291 3.0374 1.2725 34 1 4.0554 1.4070 2.3184 35 1 6.8766 0.7450 5.1934 36 1 7.4932 1.4733 3.6909 37 1 6.2394 2.3111 4.6368 38 1 4.7201 -0.2961 5.2998 39 1 3.8893 1.1949 4.7946 40 1 0.4981 -1.9896 4.1087 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393777151.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:45 Heat of formation + Delta-G solvation = 51.422425 kcal Electronic energy + Delta-G solvation = -19509.113143 eV Core-core repulsion = 16745.614250 eV Total energy + Delta-G solvation = -2763.498893 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.54554 -37.29580 -34.03996 -32.28115 -31.56120 -30.41633 -28.04974 -27.85007 -26.61533 -26.26130 -22.58483 -20.75664 -19.75963 -19.38245 -18.77813 -16.72469 -16.63337 -14.96117 -14.92362 -14.36208 -14.09265 -13.85463 -13.23148 -12.99708 -12.62114 -12.52471 -12.37518 -12.07793 -11.95660 -11.85672 -11.74360 -11.58554 -11.48186 -11.02820 -10.89546 -10.64361 -10.35417 -10.13819 -9.77452 -9.67312 -9.34270 -9.06611 -8.49532 -8.48077 -7.85676 -7.54272 -6.00521 -3.94527 2.63647 3.32364 3.39541 3.43829 3.45354 3.60573 4.49622 4.95221 5.16486 5.29521 5.38994 5.48145 5.55586 5.76698 5.85871 5.91362 5.96082 6.01959 6.13371 6.18127 6.22638 6.26677 6.32663 6.39281 6.41978 6.54677 6.64564 6.72607 6.80628 6.86826 6.95163 7.28263 7.35122 7.37237 7.84192 8.02531 8.09852 8.42545 8.45150 8.61290 9.11031 9.64929 11.12169 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.011768 C = 0.006844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.762402 B = 2378.678445 C = 4090.115945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.107 3.893 3 C -0.276 4.276 4 C 0.072 3.928 5 C -0.038 4.038 6 C 0.088 3.912 7 H 0.047 0.953 8 C -0.139 4.139 9 N -0.678 5.678 10 C 0.097 3.903 11 H 0.038 0.962 12 C -0.138 4.138 13 C -0.023 4.023 14 C -0.515 4.515 15 H 0.085 0.915 16 C 0.071 3.929 17 N -0.901 5.901 18 Si 0.873 3.127 19 H -0.279 1.279 20 H -0.292 1.292 21 H -0.268 1.268 22 N -0.284 5.284 23 N -0.452 5.452 24 H 0.434 0.566 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.136 0.864 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.359 0.641 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.052 0.948 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.577 5.569 -7.662 9.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.023 4.023 3 C -0.306 4.306 4 C -0.094 4.094 5 C -0.078 4.078 6 C -0.023 4.023 7 H 0.065 0.935 8 C -0.197 4.197 9 N -0.313 5.313 10 C -0.013 4.013 11 H 0.056 0.944 12 C -0.196 4.196 13 C -0.060 4.060 14 C -0.553 4.553 15 H 0.103 0.897 16 C -0.129 4.129 17 N -0.540 5.540 18 Si 0.702 3.298 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.193 1.193 22 N -0.108 5.108 23 N -0.159 5.159 24 H 0.277 0.723 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.154 0.846 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.181 0.819 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.534 4.963 -7.475 9.643 hybrid contribution -1.497 -0.529 0.999 1.876 sum 2.037 4.434 -6.475 8.108 Atomic orbital electron populations 1.20381 0.88218 1.02326 1.03807 1.20840 0.94136 0.87840 0.99532 1.20894 0.91794 0.98486 1.19408 1.21992 0.95235 0.91791 1.00393 1.20213 0.91474 0.97484 0.98622 1.21510 0.93428 0.97863 0.89465 0.93459 1.21889 0.96824 1.00789 1.00174 1.60725 1.11642 1.55243 1.03683 1.21433 0.95364 0.92357 0.92132 0.94414 1.21928 0.98245 1.00550 0.98903 1.19883 0.94042 0.96516 0.95597 1.21289 1.02352 1.31648 1.00032 0.89729 1.24913 0.95986 0.94755 0.97240 1.69887 1.10144 1.37575 1.36431 0.86884 0.78372 0.77947 0.86642 1.20539 1.21839 1.19299 1.77148 0.96706 1.12270 1.24662 1.46023 1.03715 1.08016 1.58144 0.72262 0.89559 0.90614 0.91905 0.84626 0.89872 0.90698 0.92861 0.93465 0.92257 0.81905 0.93786 0.93837 0.92845 0.96500 0.96560 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.27 10.43 36.01 0.38 -0.90 16 2 C 0.11 1.92 7.21 -82.26 -0.59 1.32 16 3 C -0.28 -5.03 10.64 -40.01 -0.43 -5.45 16 4 C 0.07 1.36 5.38 -82.41 -0.44 0.92 16 5 C -0.04 -0.61 5.37 -27.88 -0.15 -0.76 16 6 C 0.09 1.53 2.62 -67.71 -0.18 1.36 16 7 H 0.05 0.94 7.24 -51.93 -0.38 0.57 16 8 C -0.14 -1.98 9.18 37.16 0.34 -1.64 16 9 N -0.68 -13.45 6.17 -99.73 -0.62 -14.06 16 10 C 0.10 2.05 2.61 -67.71 -0.18 1.88 16 11 H 0.04 0.86 7.22 -51.92 -0.37 0.49 16 12 C -0.14 -2.48 9.31 37.16 0.35 -2.13 16 13 C -0.02 -0.56 3.55 -27.88 -0.10 -0.65 16 14 C -0.52 -14.27 8.66 -34.44 -0.30 -14.57 16 15 H 0.08 2.49 7.53 -52.49 -0.40 2.09 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 17 N -0.90 -25.92 13.96 55.43 0.77 -25.15 16 18 Si 0.87 21.86 27.47 -169.99 -4.67 17.19 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.27 -6.62 6.54 56.52 0.37 -6.25 16 22 N -0.28 -5.87 12.23 33.67 0.41 -5.46 16 23 N -0.45 -8.71 7.36 33.48 0.25 -8.46 16 24 H 0.43 7.69 8.96 -182.60 -1.64 6.06 16 25 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 29 H 0.08 1.21 8.12 -51.93 -0.42 0.79 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.77 6.15 -51.93 -0.32 0.45 16 32 H 0.05 0.58 8.13 -51.93 -0.42 0.16 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.36 8.04 5.92 -39.29 -0.23 7.81 16 35 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.04 0.70 6.05 -51.93 -0.31 0.38 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 39 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 321.82 15.07 4.85 4.85 Total: -1.00 -30.25 321.82 -8.21 -38.46 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -7.81 Total: 11.34 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -1.40 Total: -18.72 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.82 Total: -53.13 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.25 -8.21 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393777151.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.886 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds