Wall clock time and date at job start Mon Mar 30 2020 04:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47662 * 2 1 4 4 N 1.46896 * 109.47279 * 239.99774 * 2 1 3 5 5 C 1.53006 * 109.47027 * 120.00148 * 2 1 3 6 6 C 1.50703 * 109.47080 * 185.00180 * 5 2 1 7 7 N 1.30495 * 125.64714 * 269.95276 * 6 5 2 8 8 C 1.34129 * 109.25649 * 180.02562 * 7 6 5 9 9 C 1.34670 * 108.01944 * 359.73199 * 8 7 6 10 10 N 1.35042 * 125.65124 * 89.99907 * 6 5 2 11 11 C 1.46500 * 126.39665 * 359.96535 * 10 6 5 12 12 C 1.52997 * 109.47473 * 84.99924 * 11 10 6 13 13 C 1.53000 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47291 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00162 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99868 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47023 * 90.00014 * 19 17 15 21 21 H 1.48496 * 109.47251 * 210.00457 * 19 17 15 22 22 H 1.48498 * 109.47139 * 330.00202 * 19 17 15 23 23 H 1.09002 * 109.47219 * 300.00182 * 1 2 3 24 24 H 1.09003 * 109.47010 * 59.99995 * 1 2 3 25 25 H 1.09000 * 109.47429 * 179.97438 * 1 2 3 26 26 H 1.00902 * 111.00305 * 176.04377 * 4 2 1 27 27 H 1.00896 * 111.00299 * 300.00321 * 4 2 1 28 28 H 1.08989 * 109.47252 * 64.99617 * 5 2 1 29 29 H 1.09005 * 109.46522 * 304.99970 * 5 2 1 30 30 H 1.08002 * 125.98906 * 180.02562 * 8 7 6 31 31 H 1.07999 * 126.59279 * 180.27907 * 9 8 7 32 32 H 1.09002 * 109.47129 * 324.99667 * 11 10 6 33 33 H 1.08998 * 109.46845 * 205.00473 * 11 10 6 34 34 H 1.09002 * 109.47153 * 59.99757 * 12 11 10 35 35 H 1.09001 * 109.46832 * 299.99948 * 12 11 10 36 36 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 37 37 H 1.08992 * 109.47399 * 59.99823 * 13 12 11 38 38 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 39 39 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 40 40 H 0.96996 * 119.99309 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7213 1.2493 6 6 3.5419 -0.6149 1.3128 7 7 4.3870 -1.4612 0.7907 8 6 5.6383 -1.0494 1.0432 9 6 5.5658 0.0986 1.7435 10 7 4.2361 0.3714 1.9202 11 6 3.6715 1.5220 2.6298 12 6 3.3599 1.1273 4.0748 13 6 2.7697 2.3289 4.8156 14 6 2.4587 1.9343 6.2608 15 6 1.8779 3.1179 6.9908 16 1 1.7444 4.0577 6.4755 17 6 1.5170 3.0011 8.3163 18 7 1.0106 4.0343 8.9535 19 14 1.7471 1.3755 9.2072 20 1 3.0955 1.3382 9.8285 21 1 0.7117 1.2386 10.2628 22 1 1.6173 0.2575 8.2386 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.0262 -0.6501 -1.2558 27 1 1.6961 -1.6479 -1.2227 28 1 1.7516 -1.7715 1.2057 29 1 1.6053 -0.2617 2.1370 30 1 6.5451 -1.5484 0.7345 31 1 6.3970 0.6890 2.0997 32 1 2.7544 1.8402 2.1342 33 1 4.3907 2.3410 2.6238 34 1 4.2771 0.8091 4.5704 35 1 2.6407 0.3082 4.0806 36 1 3.4885 3.1482 4.8098 37 1 1.8525 2.6467 4.3199 38 1 1.7400 1.1149 6.2671 39 1 3.3761 1.6168 6.7563 40 1 0.7563 3.9519 9.8859 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395327929.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:14 Heat of formation + Delta-G solvation = 9.090967 kcal Electronic energy + Delta-G solvation = -18297.050446 eV Core-core repulsion = 15531.715923 eV Total energy + Delta-G solvation = -2765.334523 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.09752 -37.62983 -37.29398 -35.25155 -33.69699 -31.61673 -30.59275 -29.90629 -27.52123 -26.72219 -23.72776 -22.28678 -22.04968 -21.81570 -20.52601 -18.89912 -17.94054 -17.06145 -16.55878 -16.45500 -16.18459 -15.66463 -15.16035 -14.90811 -14.80870 -14.50724 -14.23229 -14.06351 -13.75475 -13.66027 -13.10675 -12.95720 -12.73382 -12.53815 -12.45229 -12.25687 -11.91842 -11.80369 -11.69769 -11.45463 -11.33463 -10.95698 -10.78188 -10.49525 -9.79156 -9.21745 -8.31224 -6.35022 1.09865 1.33563 1.35419 1.46607 1.86343 2.15765 2.33720 3.04577 3.39716 3.62635 3.73151 3.81495 3.94777 4.05019 4.20438 4.25583 4.32420 4.35899 4.54702 4.58649 4.62486 4.70934 4.79940 4.84162 4.93854 4.97391 5.08221 5.10932 5.19285 5.34397 5.40399 5.51430 5.58220 5.65431 5.84868 6.22427 6.26457 6.27301 6.54796 6.73838 7.13572 7.30151 8.85490 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.024198 B = 0.004438 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.843982 B = 6307.039276 C = 6872.514867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.099 3.901 3 H 0.069 0.931 4 N -0.841 5.841 5 C -0.071 4.071 6 C 0.193 3.807 7 N -0.520 5.520 8 C -0.053 4.053 9 C -0.056 4.056 10 N -0.450 5.450 11 C 0.105 3.895 12 C -0.120 4.120 13 C -0.091 4.091 14 C -0.014 4.014 15 C -0.532 4.532 16 H 0.036 0.964 17 C 0.004 3.996 18 N -0.951 5.951 19 Si 0.948 3.052 20 H -0.268 1.268 21 H -0.284 1.284 22 H -0.249 1.249 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.339 0.661 27 H 0.344 0.656 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.185 0.815 31 H 0.197 0.803 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.017 0.983 39 H 0.014 0.986 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.401 -10.067 -17.523 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.014 4.014 3 H 0.088 0.912 4 N -0.370 5.370 5 C -0.112 4.112 6 C -0.069 4.069 7 N -0.240 5.240 8 C -0.200 4.200 9 C -0.190 4.190 10 N -0.132 5.132 11 C -0.017 4.017 12 C -0.159 4.159 13 C -0.129 4.129 14 C -0.051 4.051 15 C -0.570 4.570 16 H 0.054 0.946 17 C -0.192 4.192 18 N -0.592 5.592 19 Si 0.771 3.229 20 H -0.193 1.193 21 H -0.210 1.210 22 H -0.172 1.172 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.152 0.848 27 H 0.157 0.843 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.202 0.798 31 H 0.214 0.786 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.035 0.965 39 H 0.032 0.968 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.652 -10.038 -18.142 21.249 hybrid contribution 0.858 -0.138 2.108 2.280 sum 5.510 -10.176 -16.034 19.774 Atomic orbital electron populations 1.21781 0.92729 1.02799 1.02645 1.21366 0.96296 0.97257 0.86503 0.91245 1.59057 1.16555 1.21656 1.39729 1.21047 0.84613 1.03740 1.01783 1.23449 0.96599 0.87885 0.98954 1.70181 1.01195 1.28092 1.24483 1.22657 0.95913 0.96892 1.04552 1.23212 0.86448 1.01968 1.07348 1.45611 1.06674 1.20587 1.40284 1.22081 1.01361 0.86327 0.91895 1.21857 1.01297 0.98845 0.93874 1.21239 1.00249 0.96614 0.94826 1.19543 0.95801 0.95362 0.94441 1.21534 1.41106 0.98104 0.96263 0.94606 1.25998 0.94349 1.00265 0.98625 1.70066 1.44970 1.32696 1.11464 0.85694 0.78308 0.80361 0.78494 1.19322 1.21013 1.17235 0.91325 0.91743 0.91871 0.84814 0.84333 0.88944 0.89274 0.79841 0.78618 0.87893 0.87211 0.91971 0.92026 0.92352 0.92148 0.96475 0.96766 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.49 71.98 0.68 -1.53 16 2 C 0.10 1.79 3.40 44.92 0.15 1.95 16 3 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 4 N -0.84 -16.16 9.20 -168.68 -1.55 -17.72 16 5 C -0.07 -1.39 5.02 29.85 0.15 -1.24 16 6 C 0.19 4.60 6.46 138.13 0.89 5.49 16 7 N -0.52 -13.56 10.80 -188.13 -2.03 -15.59 16 8 C -0.05 -1.20 11.87 83.52 0.99 -0.21 16 9 C -0.06 -1.17 11.58 83.09 0.96 -0.21 16 10 N -0.45 -9.99 2.75 -514.29 -1.42 -11.40 16 11 C 0.11 2.13 5.68 86.38 0.49 2.62 16 12 C -0.12 -3.13 5.54 30.59 0.17 -2.96 16 13 C -0.09 -3.06 5.15 30.59 0.16 -2.91 16 14 C -0.01 -0.62 4.04 29.85 0.12 -0.50 16 15 C -0.53 -29.82 9.66 25.60 0.25 -29.57 16 16 H 0.04 2.19 7.99 -2.91 -0.02 2.17 16 17 C 0.00 0.25 5.47 84.65 0.46 0.72 16 18 N -0.95 -59.02 13.96 21.45 0.30 -58.72 16 19 Si 0.95 43.73 27.47 68.60 1.88 45.61 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 22 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 23 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.34 7.35 7.93 -89.69 -0.71 6.64 16 27 H 0.34 5.99 9.00 -89.70 -0.81 5.18 16 28 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.09 1.70 7.36 -2.38 -0.02 1.68 16 30 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 31 H 0.20 2.90 8.06 -2.91 -0.02 2.87 16 32 H 0.10 1.88 7.92 -2.39 -0.02 1.86 16 33 H 0.11 1.90 8.13 -2.39 -0.02 1.88 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.65 7.67 -2.39 -0.02 1.63 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 39 H 0.01 0.61 7.57 -2.39 -0.02 0.60 16 40 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -67.07 328.61 2.11 -64.96 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -0.56 Total: 21.21 kcal Atomic # 6 Polarization: -33.83 SS G_CDS: 5.48 Total: -28.35 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -4.70 Total: -103.43 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.88 Total: 45.61 kcal Total: -67.07 2.11 -64.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395327929.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.049 kcal (2) G-P(sol) polarization free energy of solvation -67.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds